mRNA_16167 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|136177
Unique NamemRNA_16167
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|136177 vs. uniprot
Match: A0A835ZG13_9STRA (Tctex-1 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG13_9STRA)

HSP 1 Score: 222 bits (565), Expect = 2.140e-73
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1
Query:    1 QPAYRKRASVNQMREIIRAILEEQLSGQTYSGDVATAQTKKISDEIKDRLKTMSLDRYKYVVQVIIGEQRGEGVRMGCRCFWDADTDACASESFINDHIFCVATAYGIYHY 333
            QPAYRKRASVNQMREIIRAILEEQLSGQTYSGDVATAQTKKISDEIKDRLKTMSLDRYKYVVQVIIGEQRGEGVRMGCRCFWDADTDACASESFINDHIFCVATAYGIYHY
Sbjct:    1 QPAYRKRASVNQMREIIRAILEEQLSGQTYSGDVATAQTKKISDEIKDRLKTMSLDRYKYVVQVIIGEQRGEGVRMGCRCFWDADTDACASESFINDHIFCVATAYGIYHY 111          
BLAST of jgi.p|Trimin1|136177 vs. uniprot
Match: F0YJL5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJL5_AURAN)

HSP 1 Score: 140 bits (352), Expect = 9.460e-41
Identity = 67/109 (61.47%), Postives = 83/109 (76.15%), Query Frame = 1
Query:    1 QPAYRKRASVNQMREIIRAILEEQLSGQTYSGDVATAQTKKISDEIKDRLKTMSLDRYKYVVQVIIGEQRGEGVRMGCRCFWDADTDACASESFINDHIFCVATAYGIY 327
            +PAY  RAS  +M+E+I+ +L+E LSGQTY GD    QTK I+D +KD+LK   L RYK++VQV+IGEQRGEGVRMGCR FWD DTD  ASE+F ND IFC+  AY +Y
Sbjct:   14 RPAYGMRASPTKMKELIKEVLKESLSGQTYQGDQVQQQTKLIADTVKDKLKGELLPRYKFMVQVVIGEQRGEGVRMGCRTFWDRDTDTYASETFTNDSIFCIVVAYAVY 122          
BLAST of jgi.p|Trimin1|136177 vs. uniprot
Match: A0A7S2BCB7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BCB7_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.560e-40
Identity = 64/111 (57.66%), Postives = 90/111 (81.08%), Query Frame = 1
Query:    1 QPAYRKRASVNQMREIIRAILEEQLSGQTYSGDVATAQTKKISDEIKDRLKTMSLDRYKYVVQVIIGEQRGEGVRMGCRCFWDADTDACASESFINDHIFCVATAYGIYHY 333
            +P YR+R SVN+M+ +I+++++E+L G+TY  +    QT  I+D+I++RL+ +   RYK+ VQV+IGEQRGEGVRMGCR FWDADTDA ASE+++ND +FCVATAYG+Y Y
Sbjct:   42 RPEYRQRISVNEMKVVIKSVVKEELEGKTYQTESVQDQTTAIADKIRNRLRDLQKPRYKFFVQVVIGEQRGEGVRMGCRTFWDADTDAYASETYVNDSLFCVATAYGVYLY 152          
BLAST of jgi.p|Trimin1|136177 vs. uniprot
Match: A0A7S2S8M8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8M8_9STRA)

HSP 1 Score: 137 bits (346), Expect = 7.510e-40
Identity = 65/111 (58.56%), Postives = 89/111 (80.18%), Query Frame = 1
Query:    1 QPAYRKRASVNQMREIIRAILEEQLSGQTYSGDVATAQTKKISDEIKDRLKTMSLDRYKYVVQVIIGEQRGEGVRMGCRCFWDADTDACASESFINDHIFCVATAYGIYHY 333
            +PAY++R SV  M+ II  +++E+L G+TY+ D A  QTK ISDEI++RLK + L RYK++VQV++GE R EGVRMGCR FWDA+TDA A+ +++ND +FCVATAYG+Y Y
Sbjct:   13 RPAYKQRVSVAAMKTIIDTVMKEELEGKTYAVDQAQVQTKHISDEIRNRLKALDLPRYKFMVQVVLGEMRLEGVRMGCRTFWDAETDAHATSNYMNDSLFCVATAYGVYLY 123          
BLAST of jgi.p|Trimin1|136177 vs. uniprot
Match: A0A2C9KTG2_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9KTG2_BIOGL)

HSP 1 Score: 131 bits (329), Expect = 5.950e-37
Identity = 61/111 (54.95%), Postives = 84/111 (75.68%), Query Frame = 1
Query:    1 QPAYRKRASVNQMREIIRAILEEQLSGQTYSGDVATAQTKKISDEIKDRLKTMSLDRYKYVVQVIIGEQRGEGVRMGCRCFWDADTDACASESFINDHIFCVATAYGIYHY 333
            +P Y ++     ++E+I  +L E+LSG TYS + +TA TK I+D IK +LK +  DRYK++VQV+IGEQRGEGV+MGCRCFWD+DTD  A + FIN+ +FCVA AYG++ Y
Sbjct:   37 RPNYSQKFRPANVKELIHTVLGEKLSGVTYSSEESTALTKDIADSIKFKLKDLGYDRYKFIVQVVIGEQRGEGVKMGCRCFWDSDTDNYAQDIFINESLFCVAAAYGVFKY 147          
BLAST of jgi.p|Trimin1|136177 vs. uniprot
Match: A0A7S3XGP2_OXYMA (Hypothetical protein n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3XGP2_OXYMA)

HSP 1 Score: 130 bits (327), Expect = 6.020e-37
Identity = 63/110 (57.27%), Postives = 85/110 (77.27%), Query Frame = 1
Query:    4 PAYRKRASVNQMREIIRAILEEQLSGQTYSGDVATAQTKKISDEIKDRLKTMSLDRYKYVVQVIIGEQRGEGVRMGCRCFWDADTDACASESFINDHIFCVATAYGIYHY 333
            P Y+ +    Q++EIIRA L ++L+GQ Y+ +  T  TK ++D+I+DRLK + L RYK+VVQVIIGEQ+G+GVRM  RCFWD DTDA ASESF N+ ++C+ATAYG+Y Y
Sbjct:   15 PEYKHKFRPAQVKEIIRASLNQKLTGQAYNVEQTTVLTKAVADDIRDRLKELQLPRYKFVVQVIIGEQKGQGVRMANRCFWDGDTDAQASESFHNETLWCIATAYGVYLY 124          
BLAST of jgi.p|Trimin1|136177 vs. uniprot
Match: A0A088MHF4_EUGGR (Putative Tctex-1 domain-containing protein 1 n=1 Tax=Euglena gracilis TaxID=3039 RepID=A0A088MHF4_EUGGR)

HSP 1 Score: 130 bits (326), Expect = 7.130e-37
Identity = 58/111 (52.25%), Postives = 84/111 (75.68%), Query Frame = 1
Query:    1 QPAYRKRASVNQMREIIRAILEEQLSGQTYSGDVATAQTKKISDEIKDRLKTMSLDRYKYVVQVIIGEQRGEGVRMGCRCFWDADTDACASESFINDHIFCVATAYGIYHY 333
            +P ++K+     ++EI++ +L+E+L GQ Y  D  T  TK+I+D I+DRLK +  DRYK++V V+IGEQRGEG++MGCRCFWD+DTD  A E +I+  +FCVAT +G+YHY
Sbjct:    8 RPNHKKKFRGPVVKEIMKKVLQEKLEGQEYQADNVTNSTKEIADAIRDRLKELGWDRYKFIVSVVIGEQRGEGLKMGCRCFWDSDTDNYAEELYISKQLFCVATVFGLYHY 118          
BLAST of jgi.p|Trimin1|136177 vs. uniprot
Match: UPI0014557313 (tctex1 domain-containing protein 2-like isoform X1 n=2 Tax=Asterias rubens TaxID=7604 RepID=UPI0014557313)

HSP 1 Score: 128 bits (321), Expect = 7.040e-36
Identity = 57/98 (58.16%), Postives = 76/98 (77.55%), Query Frame = 1
Query:   40 REIIRAILEEQLSGQTYSGDVATAQTKKISDEIKDRLKTMSLDRYKYVVQVIIGEQRGEGVRMGCRCFWDADTDACASESFINDHIFCVATAYGIYHY 333
            +E I  +L E L+ + Y  +  TA  K+IS EIK++LK + LDRYKY+VQV+IGEQRGEGV+MGCRCFWD+DTD  A + F+ND +FCVA A+G++HY
Sbjct:   39 KEAIHVVLNEMLAEKQYDAEETTAWCKEISSEIKEKLKALGLDRYKYIVQVVIGEQRGEGVKMGCRCFWDSDTDNYAQDIFMNDSLFCVAAAFGVFHY 136          
BLAST of jgi.p|Trimin1|136177 vs. uniprot
Match: UPI0003595375 (tctex1 domain-containing protein 2 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI0003595375)

HSP 1 Score: 128 bits (322), Expect = 7.290e-36
Identity = 59/99 (59.60%), Postives = 80/99 (80.81%), Query Frame = 1
Query:   37 MREIIRAILEEQLSGQTYSGDVATAQTKKISDEIKDRLKTMSLDRYKYVVQVIIGEQRGEGVRMGCRCFWDADTDACASESFINDHIFCVATAYGIYHY 333
            ++E++  +L E+L+G+TYS +  TA TK+IS+ I+DRLK M  DRYK+VVQV+IGEQRGEGV+M CRCFWD+DTD  A + F+ND +FCVA AYG++ Y
Sbjct:   51 VKEMLHTVLGEKLTGKTYSSEDTTAWTKEISETIRDRLKDMGHDRYKFVVQVVIGEQRGEGVKMCCRCFWDSDTDNYAQDIFMNDSLFCVAAAYGVFKY 149          
BLAST of jgi.p|Trimin1|136177 vs. uniprot
Match: S7WFN7_TOXGG (Tctex2-related light chain n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=S7WFN7_TOXGG)

HSP 1 Score: 127 bits (318), Expect = 1.630e-35
Identity = 58/110 (52.73%), Postives = 84/110 (76.36%), Query Frame = 1
Query:    4 PAYRKRASVNQMREIIRAILEEQLSGQTYSGDVATAQTKKISDEIKDRLKTMSLDRYKYVVQVIIGEQRGEGVRMGCRCFWDADTDACASESFINDHIFCVATAYGIYHY 333
            PAYR +     ++EI++++L  QL G  Y+ + +   TK+I++EIKDRLK + + RYK +V VI+GEQRG+GVR+G RCFWD +TD+ A+ESF+NDH+FC+ATAY +Y Y
Sbjct:   20 PAYRHKFKSKPVKEILKSVLHGQLEGVEYNAEESPLLTKQIANEIKDRLKDLDVPRYKILVNVILGEQRGQGVRLGRRCFWDNNTDSVANESFVNDHLFCIATAYAVYLY 129          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136177 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZG13_9STRA2.140e-73100.00Tctex-1 (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
F0YJL5_AURAN9.460e-4161.47Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2BCB7_9STRA1.560e-4057.66Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2S8M8_9STRA7.510e-4058.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2C9KTG2_BIOGL5.950e-3754.95Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
A0A7S3XGP2_OXYMA6.020e-3757.27Hypothetical protein n=1 Tax=Oxyrrhis marina TaxID... [more]
A0A088MHF4_EUGGR7.130e-3752.25Putative Tctex-1 domain-containing protein 1 n=1 T... [more]
UPI00145573137.040e-3658.16tctex1 domain-containing protein 2-like isoform X1... [more]
UPI00035953757.290e-3659.60tctex1 domain-containing protein 2 n=1 Tax=Aplysia... [more]
S7WFN7_TOXGG1.630e-3552.73Tctex2-related light chain n=15 Tax=Toxoplasma gon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_163contigContig_163:26729..28321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|136177|gw1.163.23.1
Descriptionregulation of intraciliary retrograde transport
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4108@1|root,KOG4108@2759|Eukaryota
Evalue1.55e-41
Seed ortholog44056.XP_009040587.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTctex-1
Ec32 orthologEc-12_006150.1
TranscriptId136499
TrackFilteredModels1
ProteinId136177
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136177gene_16167Tribonema minus UTEX_B_3156 geneContig_163 26729..28321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136177Trimin1|136177|gw1.163.23.1Tribonema minus UTEX_B_3156 polypeptideContig_163 26729..28321 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16167_2exon_16167_2Tribonema minus UTEX_B_3156 exonContig_163 26729..26773 -
exon_16167_1exon_16167_1Tribonema minus UTEX_B_3156 exonContig_163 28034..28321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16167CDS_16167Tribonema minus UTEX_B_3156 CDSContig_163 28034..28321 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16167 ID=mRNA_16167|Name=jgi.p|Trimin1|136177|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=333bp|location=Sequence derived from alignment at Contig_163:26729..28321- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCCCGCGTATCGGAAACGAGCGAGTGTGAATCAGATGCGCGAGATAAT
CCGAGCCATACTGGAGGAGCAGCTGAGCGGGCAGACGTACAGCGGAGACG
TGGCGACAGCTCAAACCAAAAAGATCAGCGACGAGATCAAGGACAGGCTC
AAAACGATGTCTCTGGATCGATACAAATACGTGGTGCAGGTGATCATCGG
GGAGCAAAGAGGGGAAGGCGTGAGGATGGGCTGCCGCTGCTTTTGGGACG
CAGATACGGATGCGTGTGCCAGCGAAAGCTTTATTAATGACCACATCTTC
TGCGTGGCAACAGCGTACGGCATATACCACTAC
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protein sequence of jgi.p|Trimin1|136177

>Trimin1|136177|gw1.163.23.1 ID=Trimin1|136177|gw1.163.23.1|Name=jgi.p|Trimin1|136177|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=111bp
QPAYRKRASVNQMREIIRAILEEQLSGQTYSGDVATAQTKKISDEIKDRL
KTMSLDRYKYVVQVIIGEQRGEGVRMGCRCFWDADTDACASESFINDHIF
CVATAYGIYHY
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mRNA from alignment at Contig_163:26729..28321-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16167 ID=mRNA_16167|Name=jgi.p|Trimin1|136177|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1593bp|location=Sequence derived from alignment at Contig_163:26729..28321- (Tribonema minus UTEX_B_3156 )
CAGCCCGCGTATCGGAAACGAGCGAGTGTGAATCAGATGCGCGAGATAAT CCGAGCCATACTGGAGGAGCAGCTGAGCGGGCAGACGTACAGCGGAGACG TGGCGACAGCTCAAACCAAAAAGATCAGCGACGAGATCAAGGACAGGCTC AAAACGATGTCTCTGGATCGATACAAATACGTGGTGCAGGTGATCATCGG GGAGCAAAGAGGGGAAGGCGTGAGGATGGGCTGCCGCTGCTTTTGGGACG CAGATACGGATGCGTGTGCCAGCGAAAGCTTTATTAATGTGAGTCAGGGC TGTTGTGGTTGCACTGACTCTGCATGCTGACAAAGCGGCAGGGCTAAATT TGCCTGCACTGTAATGGTGGCATGCTGCTGAGGTTGCGCACCGCAAGAGC AGGCGTGCACACATGGCCACAGCACTGTACAGCCTGAGTTCAACTTTCAT TTGGTATCAGCACCGCACCTACCACGAGTAAGTGCACTGCCTGATCCGCA AGCCCGCAGTTTCCGACATGATGCCGCACCTTAGCATGGCGACGGAACTA AAGCTTCACTACTTTTCCCATCAGTAGGACACTTGCCGCTTTGATAATCT ACAACACGAGGCGTTTACGTGAGCTTGCACAAACAATCATGATTGCATTG AGCAGCCTACTGAAAAGATCCGCACTTGCTAGGCTGCTTCTTGATAGCTG ACGTAGCCAGTGAGGCTATGTGCACTCTCTACCAGTGCCAGGCTTTCTGG CACTGCAAGGCTCATCTTCACAAACTTGCCAACGCCAACACGGCGCGCAT GGATATGGAGGCTGTAATCTTGCTTGTCGTAGGCGCACAGCCTTCTCTGA AACGCCCTACAAAAATTTTGCGCTATGGCGCCCTCCATGATGGGCATGCA CGCTTGTGCCAGTTTTGCCATTACTTGTGCAAACAGAGAGGGCTGATGCG ATGACCTGGTGCGCTCAATGTTGACAAGCGCCAGGTGTAGTGTTCGCTGG CAAATGTGTATTGTTTTAAAAAGTAGGGGCCACGCGCGCTTGAGCCATCG CAGTCCGTCTTGCTGCTGATATCAATAGCTCAACCTACTCTTCGGGCTCT TACAATGAGCGCCTGCTGGTGAGGCGACCGAGATGAAATCAAGCTTTGTG ACCAATGCATTTGTTGCACAAGGCCCATAGGCTGGGAGGGAAATGGCGTC AAGTGACTGAGACAGTGTGCAGTTGAAGTGCATGCCACTCAAATGCTGCA TGTCATGCTTGCCAGCCTCTGCCCTATGTACTAGTACTGACACGTTGCAT CAAAGCATGTCAGCCTCAGAAGAACCTTCTGTGCAAGAAGCCATGGCCCG TTGATGATCTCTCAGCCTGATCACCACTCCGCTTCAAGCACATGGCCAAT GTTCAACCATTGACCCACCATCATCCTTGATTTGCGCTGCACATTTTACA AGCATCGGAAGCGGGCCGCGCTTGCACCTTGACGTCTCAACTGCCATTTG TCACTGTCTCATCAAGCTATCATTCTCCATGTTGTGCATTCTGTGCAGGA CCACATCTTCTGCGTGGCAACAGCGTACGGCATATACCACTAC
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Coding sequence (CDS) from alignment at Contig_163:26729..28321-

>mRNA_16167 ID=mRNA_16167|Name=jgi.p|Trimin1|136177|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=333bp|location=Sequence derived from alignment at Contig_163:26729..28321- (Tribonema minus UTEX_B_3156 )
CAGCCCGCGTATCGGAAACGAGCGAGTGTGAATCAGATGCGCGAGATAAT
CCGAGCCATACTGGAGGAGCAGCTGAGCGGGCAGACGTACAGCGGAGACG
TGGCGACAGCTCAAACCAAAAAGATCAGCGACGAGATCAAGGACAGGCTC
AAAACGATGTCTCTGGATCGATACAAATACGTGGTGCAGGTGATCATCGG
GGAGCAAAGAGGGGAAGGCGTGAGGATGGGCTGCCGCTGCTTTTGGGACG
CAGATACGGATGCGTGTGCCAGCGAAAGCTTTATTAATGACCACATCTTC
TGCGTGGCAACAGCGTACGGCATATACCACTAC
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