mRNA_16090 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|177863
Unique Name	mRNA_16090
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|177863 vs. uniprot
Match: A0A836CKA0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKA0_9STRA)

HSP 1 Score: 140 bits (352), Expect = 3.360e-39
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1

Query:    1 CGEKGICQHGKERKTCRACDGEAFCEHDKRRAQQLQGHKSXXXXXXXXXXXXXXXSALLXXXXXXXXXXXXXXXKGIXXXXXXXXXXXXXXXXXXXXXXNRRGCKXXXXXXXXXXXXXXXXXASRESGGTGGXXXXXXXXXXXXXXXXXXXTRICTHGRLRSRCNECNK 507
            CGEKGICQHGKERKTCRACDGEAFCEHDKRRAQQLQGHKSXXXXXXXXXXXXXXXSALLXXXXXXXXXXXXXXXKGIXXXXXXXXXXXXXXXXXXXXXXNRRGCKXXXXXXXXXXXXXXXXXASRESGGTGGXXXXXXXXXXXXXXXXXXXTRICTHGRLRSRCNECNK
Sbjct:    1 CGEKGICQHGKERKTCRACDGEAFCEHDKRRAQQLQGHKSXXXXXXXXXXXXXXXSALLXXXXXXXXXXXXXXXKGIXXXXXXXXXXXXXXXXXXXXXXNRRGCKXXXXXXXXXXXXXXXXXASRESGGTGGXXXXXXXXXXXXXXXXXXXTRICTHGRLRSRCNECNK 169

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|177863 vs. uniprot

BLAST of jgi.p|Trimin1|177863 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CKA0_9STRA	3.360e-39	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_160	contig	Contig_160:17662..20828 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|177863\|e_gw1.160.8.1
Hectar predicted targeting category	other localisation
TranscriptId	178185
Track	FilteredModels1
ProteinId	177863

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|177863	gene_16090	Tribonema minus UTEX_B_3156	gene	Contig_160 17662..20828 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_16090_1	exon_16090_1	Tribonema minus UTEX_B_3156	exon	Contig_160 17662..17772 +
exon_16090_2	exon_16090_2	Tribonema minus UTEX_B_3156	exon	Contig_160 20379..20442 +
exon_16090_3	exon_16090_3	Tribonema minus UTEX_B_3156	exon	Contig_160 20494..20828 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_16090	CDS_16090	Tribonema minus UTEX_B_3156	CDS	Contig_160 17662..17772 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|177863	Trimin1\|177863\|e_gw1.160.8.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_160 17662..20828 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_160:17662..20828+
coding sequence from alignment at Contig_160:17662..20828+

spliced messenger RNA

>mRNA_16090 ID=mRNA_16090|Name=jgi.p|Trimin1|177863|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=510bp|location=Sequence derived from alignment at Contig_160:17662..20828+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGTGGTGAAAAAGGAATCTGCCAGCACGGAAAGGAACGCAAGACGTGCAG
GGCTTGTGATGGTGAGGCGTTTTGCGAGCATGATAAGCGACGCGCACAGC
AGTTGCAAGGACACAAATCGTGCGACCACGGCAGGCGGCGTGACAGGTGC
CTAGCATGCGGCGGTAGTGCCTTATTATGCGAGCACGGCAGGCAGCATTA
CTACTGTAAGCCGTGTGGTGGGAAAGGAATCTGCGAGCACGGGATAGAAC
GCAAGACGTGCAGGCCTTGTGGTGGTTCGGTGTTTTGCGAGCACGGCAAT
CGGCGCGGCTGCAAGTGCAAGGACTGTGGTGGGAAAGCCCAACCCAGAAG
CGGCACGCGCCGCGACGCCAGTAGGGAGAGTGGTGGCACGGGCGGTGGGG
TGGCCCAACACGAGAGCGGTGGGCGCCGCAACGACTGCGGGGACAGTGGT
GGCACGCGCATTTGCACGCACGGCAGGCTGCGTAGTCGCTGCAACGAGTG
CAACAAGTAA

protein sequence of jgi.p|Trimin1|177863

>Trimin1|177863|e_gw1.160.8.1 ID=Trimin1|177863|e_gw1.160.8.1|Name=jgi.p|Trimin1|177863|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=170bp
CGEKGICQHGKERKTCRACDGEAFCEHDKRRAQQLQGHKSCDHGRRRDRC
LACGGSALLCEHGRQHYYCKPCGGKGICEHGIERKTCRPCGGSVFCEHGN
RRGCKCKDCGGKAQPRSGTRRDASRESGGTGGGVAQHESGGRRNDCGDSG
GTRICTHGRLRSRCNECNK*

mRNA from alignment at Contig_160:17662..20828+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_16090 ID=mRNA_16090|Name=jgi.p|Trimin1|177863|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3167bp|location=Sequence derived from alignment at Contig_160:17662..20828+ (Tribonema minus UTEX_B_3156 )
TGTGGTGAAAAAGGAATCTGCCAGCACGGAAAGGAACGCAAGACGTGCAG
GGCTTGTGATGGTGAGGCGTTTTGCGAGCATGATAAGCGACGCGCACAGC
AGTTGCAAGGAGTGCGGCCCATACAAGCGCGGCATGCGCCGCGACCAATG
CAGGGATAGTGGTGGCACGAGCTTGTGCGATCACGTGCGCTGAGCGTGTT
TTTGGACACGAGGGGTACACGCAACTTGATTGAATGTTCTAAAATGCAAA
ACAAACACAGGGCCTGATCTTTTGAAGAGCAGGATCTGCAGCAGTGAATC
TCTTGAAGTTCACTCCTGCTGAGCTATGAGTGCATGGAAATAACAATCAA
TACTTAGAAGTAGGTGACACAGCACAAGGTTGCTTTACGCTCAAGCTGAG
AGCGCAGGCGCGAGTACTGAGTAGCGCGCCCGCCGCCGCGCGAGGAACGC
GCCCGCCGCCACTAAATTTGCAAATGAGCGCAGGCGTGAGTAACGTGCCC
GCCGCCGAAAGAGCGCAGGCCAGGCACTGCAGGCGCAAGTGATGCAGCCG
CCATAAATCATGATTGATGCTGTGTGTTGCGATGCCGCTGCTGCAACTTT
AGCATAGGGGACGCGCGATGCTATGTACCACACCTTATTATCAGGTTATA
GGTGCACAGACATACAACCTTTTATTTTCGAATAAACCTTATTTTGAGAT
CTGTAATTACCCCACAGCATCACAGATTTAGATTTGGTGTGCTGCAGATC
TGTTGCAAAAGACATTGTTGCACGGGGAGCCATAGCATTTGGCCATGTTA
GTTAGAAGTGATTAACATTGCGCATTGAGACACTTTGTCACAAGATTTTC
GCATGAATCTGCAGTGCAAAAAGTTACGACGCTGTTGCGTGAGCTTTTGT
CCGATCAAAGCTGTTGCGAACTCGCGTACTCCTCTGTACAGTACAGTCCT
CCCGCGGATGTACAGTTCATTCTCTAAAAAAAACTGGCGTTGGACAATTT
ATTTATAAATAAATAAATGCAGTAGTGCACTCAGTGCACTCAGTACAGTT
TTGCCTGGTGGTGGCAAGAGGTAGAGAGATGGTGGGATCACGTAAGGCAC
GTCAAACCCAGCAGCGTTCGCCACCAATGTCCCTCAAGCAGTTTTCGGAC
ATCATGGATCCGCCGGCGCCGGAGGACGACCGCCAACAGCGTATAGCGAG
GCGTGAGCATGATGCCGCCACTCGAGACATGATAAGGGAGGTGGAGGAGG
ACAACAGGCGGCTGCGAGCTGCCCTCGAGGAGCAATGCCGAAAGACGCAA
GAGCAGTGCCGGAAGACGCAAGAATTAGAGGTGCACATCGCGCAGCAGAA
GGTCACGGACGAACAGCAGGGAACGCCACGAAACCCCGAGGACGACCACA
GGCAGCGAGGGTAGAGGTCAGCAAGCGAATGCCTTACAGCTTCCTTTTTG
AGTTCCGTGTATGAGCAACAGGCCAGTCCATTCCGTTTACACGGATCGAT
TTCGTAATCGAAACTGTGTTTGTTTGCGTGTCCTGGCATGTGTATTGTAG
AGTACGTTGCCACATAGCCGTTTCATGATTACATCACACTGTACAGGAAA
AGCAGGCAGATTCCGGCAGATCTGGTGCATGCCAACATGACTGTAACAGT
TATGTACGAGATGGTATCATGTCCTTCTTGCGGGGATTGGCTCGCCGCTG
TCGCTGCCGCTTGTGCTCAGCCTTCATCCAGGCAGTGCAGGCATCACGGG
GTATGTGCTTGTGTATTTACGCTAGAGCGCTGACTTCTGCGCTGCTTTGC
ACTCAGCTGCAGCAGCTGTTTGCGCTCCACAGCGAAACGTCGTCTGCGGT
ATGTCCACTCATCAGCACCGTTGATGATGTCCTGGCTGTTGTGGCCGCAG
CGGCTGCTGTACACAGGGTGCAACTCAGCCAACAACCAAAAAAGAAACCG
TTTTGGTTCCGTATTGCATTTTCACGGTTCCGTGTACCCGATCTTCAAAC
ACGGTTTTGTGGGGATTTTTGTTTCGTTTTCCGCTTTGCTAGAACTGACG
TTGGGAGTTGATTATGCTGCTTATACCACCATGCATACATGCATATAGGA
CGCACAGAAGCTTTCGTGTTTCATACAAAACGGGAAATCGGTTTCGTTTT
TCATTCCGCTGCCGTTCTGTTGCGAATCTCTTGCAGACGGCCACAATCGC
CAGCGCAGCGCAGCAGCGGCGTCAGCATGCCGTAGCCACCATTCCTGCGT
GCGCAGGCACAATACAGCGGCCGCCCACGATGGTGGCGACAGAAGCAGCG
CCACCACAGCTCGATGAAGCGCAGGCGGCGCACGGATACGAACTTCAAGC
CAGCTCGCAGCAGACGGCGGGCAGGCGGCGCATGGATCGCAGCAGAGGGC
GCGCATGCGCATACGTCTCCAGCGACTCCAGCGAGCATGCCGAAGGCGCC
AGTCATCCGTCAGACGCCGATGACGACGACGATGCACGCAATTACGCCTC
GGAGTCCGACAGCAGCTTCGACGGCAGCCCAGCGAGAAAACGCGCGCGCG
GCGCCGGATCCAACGGCTCTCAGCGACGTGCGCCGACCGCACGCGGCGCA
TCGCGCTCGCGGCCTGCCAGCTCTGGAGGCGCAGCTGGTGCTTCAGAGGC
GAGCAGCGCGGAGAGTGCCAAGCGCCCCAGCAAGAAGACGGAGCCCAACC
AGAACAGGCATGGCAAGCACAAATCGTGCGACCACGGCAGGCGGCGTGAC
AGGTGCCTAGCATGCGGCGGTAGTGCCTTATGTGAACACTGCGTTTAACG
CTACAGCTGCCCAAAGTGCCGCGGTAAATGAGTATGCGAGCACGGCAGGC
AGCATTACTACTGTAAGCCGTGTGGTGGGAAAGGAATCTGCGAGCACGGG
ATAGAACGCAAGACGTGCAGGCCTTGTGGTGGTTCGGTGTTTTGCGAGCA
CGGCAATCGGCGCGGCTGCAAGTGCAAGGACTGTGGTGGGAAAGCCCAAC
CCAGAAGCGGCACGCGCCGCGACGCCAGTAGGGAGAGTGGTGGCACGGGC
GGTGGGGTGGCCCAACACGAGAGCGGTGGGCGCCGCAACGACTGCGGGGA
CAGTGGTGGCACGCGCATTTGCACGCACGGCAGGCTGCGTAGTCGCTGCA
ACGAGTGCAACAAGTAA

Coding sequence (CDS) from alignment at Contig_160:17662..20828+

>mRNA_16090 ID=mRNA_16090|Name=jgi.p|Trimin1|177863|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=510bp|location=Sequence derived from alignment at Contig_160:17662..20828+ (Tribonema minus UTEX_B_3156 )
TGTGGTGAAAAAGGAATCTGCCAGCACGGAAAGGAACGCAAGACGTGCAG
GGCTTGTGATGGTGAGGCGTTTTGCGAGCATGATAAGCGACGCGCACAGC
AGTTGCAAGGACACAAATCGTGCGACCACGGCAGGCGGCGTGACAGGTGC
CTAGCATGCGGCGGTAGTGCCTTATTATGCGAGCACGGCAGGCAGCATTA
CTACTGTAAGCCGTGTGGTGGGAAAGGAATCTGCGAGCACGGGATAGAAC
GCAAGACGTGCAGGCCTTGTGGTGGTTCGGTGTTTTGCGAGCACGGCAAT
CGGCGCGGCTGCAAGTGCAAGGACTGTGGTGGGAAAGCCCAACCCAGAAG
CGGCACGCGCCGCGACGCCAGTAGGGAGAGTGGTGGCACGGGCGGTGGGG
TGGCCCAACACGAGAGCGGTGGGCGCCGCAACGACTGCGGGGACAGTGGT
GGCACGCGCATTTGCACGCACGGCAGGCTGCGTAGTCGCTGCAACGAGTG
CAACAAGTAA