mRNA_16044 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135917
Unique NamemRNA_16044
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|135917 vs. uniprot
Match: A0A835Z3I6_9STRA (SET domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I6_9STRA)

HSP 1 Score: 361 bits (927), Expect = 1.370e-126
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1
Query:    1 SRLHGSGVFAKRDIKEGEFVTFYPCDAFYVGDPVHSGSTAAIRFDDRMSSEKCEELMKSSAYTLGSCGIGRMFIGDPDVTDDKWFLGHMINDGVAITQRCEDMVTQCVVYTRASRARANVEAVYLSVGRQLCVVAMCANKDVRLGEEVLYSYDFPYWLSQVGSECDGEVMKRV 519
            SRLHGSGVFAKRDIKEGEFVTFYPCDAFYVGDPVHSGSTAAIRFDDRMSSEKCEELMKSSAYTLGSCGIGRMFIGDPDVTDDKWFLGHMINDGVAITQRCEDMVTQCVVYTRASRARANVEAVYLSVGRQLCVVAMCANKDVRLGEEVLYSYDFPYWLSQVGSECDGEVMKRV
Sbjct:    1 SRLHGSGVFAKRDIKEGEFVTFYPCDAFYVGDPVHSGSTAAIRFDDRMSSEKCEELMKSSAYTLGSCGIGRMFIGDPDVTDDKWFLGHMINDGVAITQRCEDMVTQCVVYTRASRARANVEAVYLSVGRQLCVVAMCANKDVRLGEEVLYSYDFPYWLSQVGSECDGEVMKRV 173          
BLAST of jgi.p|Trimin1|135917 vs. uniprot
Match: A0A7S3BWL7_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BWL7_9EUKA)

HSP 1 Score: 82.4 bits (202), Expect = 5.030e-16
Identity = 58/180 (32.22%), Postives = 87/180 (48.33%), Query Frame = 1
Query:    1 SRLHGSGVFAKRDIKEGEFVTFYPCDAFYV---GDPVHSGST----AAIRFDDRMSSEKCEELMKSSAYTLGSCGIGRMFIGDPDVTDDKWFLGHMINDGVAITQRCEDMVTQCVVYTRASRARANVEAVYLSVGRQLCVVAMCANKDVRLGEEVLYSYDFPYWLSQVGSECDGEVMKRV 519
            S+LHG G+FA RDI+EGE +TF+P DA  V   GD   S       A +   DR ++   + +     +  G+       +GDP   DD  +LGH+ NDG        D       Y R S   AN   V++    + C   + A + +  G+E+++SY   YWLS+ G    GE ++R+
Sbjct:   21 SKLHGDGLFATRDIEEGELITFFPSDALLVWEGGDRAQSDVMMFFGAHVPQSDRDAAAILDRVQGYELFVTGAFSA----VGDPSRRDDPAYLGHLANDGSICLS--PDGAGN---YLRESAEAANAAPVWI----EGCHCGLQAGRRICKGDEIVFSYGEGYWLSRSGHGGIGEDIRRL 187          
BLAST of jgi.p|Trimin1|135917 vs. uniprot
Match: A0A7S0TFJ4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TFJ4_HEMAN)

HSP 1 Score: 75.9 bits (185), Expect = 4.190e-13
Identity = 59/164 (35.98%), Postives = 75/164 (45.73%), Query Frame = 1
Query:   13 GSGVFAKRDIKEGEFVTFYPCDAFYVG-DPVHSGSTAAIRFDDRMSSEKCEELMKSSAYTLGS---CGIGRMFIGDPDVTDDKWFLGHMINDGVAITQRCEDMVTQCVVYTRASRARANVEAVYLSV------GRQLCV-VAMCANKDVRLGEEVLYSYDFPYW 471
            G GVFA RDI EGE +T YP DA  +  D  H        F  +   +    L ++     G    C      +GDP   DD  ++GH+ NDG       E+ V Q   Y R S  +AN + V LSV      G  L +  A+ A K VR GEEVL S+   YW
Sbjct:  164 GKGVFATRDIGEGELITLYPADAVLMWEDETHDVHKKVTCFFSKHVPDADRVLQRALTKWRGCEVPCHPTMSILGDPGRVDDPTYVGHIANDGAMCES--EEGVEQ---YERLSGEKANAQIVPLSVAETDSEGNPLVLHFALMATKPVREGEEVLVSFGADYW 322          
BLAST of jgi.p|Trimin1|135917 vs. uniprot
Match: A0A7S1SN39_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SN39_9CHLO)

HSP 1 Score: 67.8 bits (164), Expect = 1.880e-10
Identity = 55/170 (32.35%), Postives = 78/170 (45.88%), Query Frame = 1
Query:    1 SRLHGSGVFAKRDIKEGEFVTFYPCDAFY---VGDPVHSGSTAAIRFDDRMSSEKCEE----LMKSSAYTLGSCGIGRM-FIGDP-DVTDDKWFLGHMINDGVAITQRCEDMVTQCVVYTRASRARANVEAVYLSVGRQLCVVAMCANKDVRLGEEVLYSYDFPYWLSQV 483
            S LHG G+FA+RD+ EGE +T YP DA      G P   GS  + +F   +  E+       L +S+A         R+  +GDP    D+  +LGH+ ND   +     D   +   Y+  S   AN        G + C     A + +  GEEVL SY   YWLS++
Sbjct:   68 SPLHGFGLFARRDLAEGELITLYPGDALLRWGAGGPGPVGSPLSAQFGQHVDHEEQATPELFLRQSNARDYEVAVHKRLSIVGDPLGRVDNPAYLGHLANDAACLM--AADAAAR-TAYSSDSAHGANAA----HFGIEGCHFGTFATRAISAGEEVLVSYGEGYWLSRL 230          
BLAST of jgi.p|Trimin1|135917 vs. uniprot
Match: A0A7S2XZ27_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ27_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.470e-6
Identity = 49/176 (27.84%), Postives = 77/176 (43.75%), Query Frame = 1
Query:   13 GSGVFAKRDIKEGEFVTFYPCDAFYV-----GDPVH------SGSTAAIRFDDRMSSEK----------CEELMKSSAYTLGSCGIGRMFIGDPDVTDDKWFLGHMINDGVAITQRCEDMVTQCVVYTRASRARANVEAVYLSVGRQLCVVAMCANKDVRLGEEVLYSYDFPYWLS 477
            G G+FAK+ +K G  V+FYP     +       P+       +G    +  +D+++ +              LMK+S   LG   I      D    D   ++ H INDG  +++  E+    C+ Y + SR   N   V++  G    V+A  A + VR GEE+  SY   YWL+
Sbjct:  125 GLGLFAKKQLKAGTVVSFYPVHVLGMDRDDGSRPIRVMWNSETGQPRKVEDEDQINDKNEGSYLHHLLGSRPLMKTSIADLGH-DISLHIDVDTTYPDAPGWVSHRINDGAIVSENSEE---GCLKYYQESRDAKN--CVHIPFG-PCPVLATVATRKVRKGEELFTSYGCMYWLN 293          
BLAST of jgi.p|Trimin1|135917 vs. uniprot
Match: A0A7S2PJS8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PJS8_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.470e-6
Identity = 51/183 (27.87%), Postives = 82/183 (44.81%), Query Frame = 1
Query:   13 GSGVFAKRDIKEGEFVTFYPCDAFYV-------GDPVHSGSTAAIRFDDRMSSEKCE-----------ELMKSSAYTLGSCGIGRMFIGDPDVT-DDKWFLGHMINDGVAITQRCEDMVTQCVVYTRASRARANVEAVYLSVGRQLCVVAMCANKDVRLGEEVLYSYDFPYWLSQVGSECDGE 504
            G G+FA RDI EGE +T YP DA          G+   +G  ++I F   +++E  +             M+ ++YT          +G+P +   DK ++GH  NDG    +  +D   +   Y + +    N  A ++  G  +  VA    K ++ G EV  SY   YWLS+  S+  G+
Sbjct:  115 GYGLFASRDIMEGELITLYPGDAVLSKSVEVGEGNEKSAGPISSIMFGSHIATEHRDINRVLTHEARGYEMEITSYTS--------IVGNPTLGFTDKSYIGHFANDG-GYLREFDDAGRKA--YEKETLENYNA-ANFVLEGAHMGTVA---TKPIKKGSEVFLSYGEGYWLSRSDSDSAGK 282          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135917 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835Z3I6_9STRA1.370e-126100.00SET domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S3BWL7_9EUKA5.030e-1632.22Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S0TFJ4_HEMAN4.190e-1335.98Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S1SN39_9CHLO1.880e-1032.35Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7S2XZ27_9STRA6.470e-627.84Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2PJS8_9STRA6.470e-627.87Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_198contigContig_198:192666..193184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135917|gw1.198.14.1
Hectar predicted targeting categoryother localisation
TranscriptId136239
TrackFilteredModels1
ProteinId135917
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135917gene_16044Tribonema minus UTEX_B_3156 geneContig_198 192666..193184 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16044_1exon_16044_1Tribonema minus UTEX_B_3156 exonContig_198 192666..193184 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16044CDS_16044Tribonema minus UTEX_B_3156 CDSContig_198 192666..193184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135917Trimin1|135917|gw1.198.14.1Tribonema minus UTEX_B_3156 polypeptideContig_198 192666..193184 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16044 ID=mRNA_16044|Name=jgi.p|Trimin1|135917|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=519bp|location=Sequence derived from alignment at Contig_198:192666..193184+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGTCGATTACACGGATCGGGGGTCTTCGCAAAGCGGGACATCAAAGAGGG
CGAGTTCGTCACATTCTACCCGTGCGATGCGTTTTATGTTGGCGACCCCG
TCCACAGCGGATCAACAGCAGCCATAAGATTTGATGACAGGATGAGCAGT
GAAAAGTGCGAAGAGCTCATGAAGTCGAGCGCGTACACTCTAGGGTCGTG
TGGAATTGGACGCATGTTTATAGGAGATCCAGATGTGACCGACGATAAGT
GGTTTCTGGGTCATATGATAAACGATGGCGTTGCAATCACACAGAGATGT
GAAGATATGGTCACACAATGTGTGGTGTACACCAGGGCTTCAAGAGCTCG
AGCCAATGTTGAAGCTGTGTACCTCAGTGTCGGTAGGCAATTGTGTGTCG
TGGCCATGTGCGCTAACAAAGATGTACGGCTTGGTGAAGAAGTACTATAC
AGCTATGATTTCCCGTACTGGTTGAGTCAAGTTGGAAGTGAATGCGATGG
AGAAGTGATGAAGCGTGTG
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protein sequence of jgi.p|Trimin1|135917

>Trimin1|135917|gw1.198.14.1 ID=Trimin1|135917|gw1.198.14.1|Name=jgi.p|Trimin1|135917|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=173bp
SRLHGSGVFAKRDIKEGEFVTFYPCDAFYVGDPVHSGSTAAIRFDDRMSS
EKCEELMKSSAYTLGSCGIGRMFIGDPDVTDDKWFLGHMINDGVAITQRC
EDMVTQCVVYTRASRARANVEAVYLSVGRQLCVVAMCANKDVRLGEEVLY
SYDFPYWLSQVGSECDGEVMKRV
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mRNA from alignment at Contig_198:192666..193184+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16044 ID=mRNA_16044|Name=jgi.p|Trimin1|135917|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=519bp|location=Sequence derived from alignment at Contig_198:192666..193184+ (Tribonema minus UTEX_B_3156 )
AGTCGATTACACGGATCGGGGGTCTTCGCAAAGCGGGACATCAAAGAGGG CGAGTTCGTCACATTCTACCCGTGCGATGCGTTTTATGTTGGCGACCCCG TCCACAGCGGATCAACAGCAGCCATAAGATTTGATGACAGGATGAGCAGT GAAAAGTGCGAAGAGCTCATGAAGTCGAGCGCGTACACTCTAGGGTCGTG TGGAATTGGACGCATGTTTATAGGAGATCCAGATGTGACCGACGATAAGT GGTTTCTGGGTCATATGATAAACGATGGCGTTGCAATCACACAGAGATGT GAAGATATGGTCACACAATGTGTGGTGTACACCAGGGCTTCAAGAGCTCG AGCCAATGTTGAAGCTGTGTACCTCAGTGTCGGTAGGCAATTGTGTGTCG TGGCCATGTGCGCTAACAAAGATGTACGGCTTGGTGAAGAAGTACTATAC AGCTATGATTTCCCGTACTGGTTGAGTCAAGTTGGAAGTGAATGCGATGG AGAAGTGATGAAGCGTGTG
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Coding sequence (CDS) from alignment at Contig_198:192666..193184+

>mRNA_16044 ID=mRNA_16044|Name=jgi.p|Trimin1|135917|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=519bp|location=Sequence derived from alignment at Contig_198:192666..193184+ (Tribonema minus UTEX_B_3156 )
AGTCGATTACACGGATCGGGGGTCTTCGCAAAGCGGGACATCAAAGAGGG
CGAGTTCGTCACATTCTACCCGTGCGATGCGTTTTATGTTGGCGACCCCG
TCCACAGCGGATCAACAGCAGCCATAAGATTTGATGACAGGATGAGCAGT
GAAAAGTGCGAAGAGCTCATGAAGTCGAGCGCGTACACTCTAGGGTCGTG
TGGAATTGGACGCATGTTTATAGGAGATCCAGATGTGACCGACGATAAGT
GGTTTCTGGGTCATATGATAAACGATGGCGTTGCAATCACACAGAGATGT
GAAGATATGGTCACACAATGTGTGGTGTACACCAGGGCTTCAAGAGCTCG
AGCCAATGTTGAAGCTGTGTACCTCAGTGTCGGTAGGCAATTGTGTGTCG
TGGCCATGTGCGCTAACAAAGATGTACGGCTTGGTGAAGAAGTACTATAC
AGCTATGATTTCCCGTACTGGTTGAGTCAAGTTGGAAGTGAATGCGATGG
AGAAGTGATGAAGCGTGTG
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