mRNA_16000 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|353056 vs. uniprot
Match: A0A835Z943_9STRA (Integral membrane protein DUF106-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z943_9STRA) HSP 1 Score: 363 bits (933), Expect = 1.220e-126 Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 1 Query: 31 MALASIAAVCLAALCSVGAELLNRKWYYDTEAFAKLVRTFDRLDEEIEKRKFDALYKTDDKRRARELKGVENLEKEKNLTETALQATKFKASLVTAVGMISGVWTLNRFFKGLVVFTLPFRAPFPFRLLTHRGLEGDDYRQISVTFMFILTAMLMRRVIDKKLGSPMPKALQKKTFASQWAELEAKNR 594 MALASIAAVCLAALCSVGAELLNRKWYYDTEAFAKLVRTFDRLDEEIEKRKFDALYKTDDKRRARELKGVENLEKEKNLTETALQATKFKASLVTAVGMISGVWTLNRFFKGLVVFTLPFRAPFPFRLLTHRGLEGDDYRQISVTFMFILTAMLMRRVIDKKLGSPMPKALQKKTFASQWAELEAKNR Sbjct: 1 MALASIAAVCLAALCSVGAELLNRKWYYDTEAFAKLVRTFDRLDEEIEKRKFDALYKTDDKRRARELKGVENLEKEKNLTETALQATKFKASLVTAVGMISGVWTLNRFFKGLVVFTLPFRAPFPFRLLTHRGLEGDDYRQISVTFMFILTAMLMRRVIDKKLGSPMPKALQKKTFASQWAELEAKNR 188
BLAST of jgi.p|Trimin1|353056 vs. uniprot
Match: A0A7S4I6A2_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4I6A2_9EUKA) HSP 1 Score: 71.6 bits (174), Expect = 4.570e-12 Identity = 39/104 (37.50%), Postives = 58/104 (55.77%), Query Frame = 1 Query: 247 LEKEKNLTETALQATKFKASLVTAVGMISGVWTLNRFFKGLVVFTLPFRAPFPFRLLTHRGLEGDDYRQISVTFMFILTAMLMRRVIDKKLGSPMPKALQKKTF 558 LEKE + T L K +A++ TA + ++L ++GLV+ LPF R +THRGLEGDDYR+ V ++I+ +M M+ + + LG PK KT Sbjct: 69 LEKEVDATNRDLTLFKMRANMATAFMHMLTFYSLKTNYEGLVIARLPFEPFAMIRGITHRGLEGDDYRECGVILVYIICSMAMKPNLQRVLGHAPPKTAMPKTI 172
BLAST of jgi.p|Trimin1|353056 vs. uniprot
Match: A0A6V1S8S1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S8S1_HETAK) HSP 1 Score: 70.5 bits (171), Expect = 2.050e-11 Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 1 Query: 85 AELLNRKWYYDTEAFAKLVRTFDRLDEEIEKRKFDALY----------KTDDKRRARELKGVENLEKEKNLTETALQATKFKASLVTAVGMISGVWTLNRFFKGLVVFTLPFRAPFPFRLLTHRGLEGDDYRQISVTFMFILTAMLMRRVIDKKLGS 525 AE L R + + + + RL E++K DA+ K D R ++ K +E +E + L+A + KA+ MI+ W +N+ FKG+VV LPF+ + +THRGL+G+D+ S+TF++ L ++ +R I K +GS Sbjct: 24 AEGLGRYFVFSKPHYVEKKDKLIRLFRLYEQKKADAMVVKKKDKIAKSKKDTDPRKKQKKMLEGIEADLRKEMKELKALEVKANFSNGAVMIALFWVMNKMFKGVVVGRLPFQPITFIQRMTHRGLDGEDFFDCSMTFIYTLASLGLRPSIKKLIGS 180
BLAST of jgi.p|Trimin1|353056 vs. uniprot
Match: A0A2T9YU79_9FUNG (Uncharacterized protein n=2 Tax=Harpellales TaxID=61421 RepID=A0A2T9YU79_9FUNG) HSP 1 Score: 65.1 bits (157), Expect = 1.390e-9 Identity = 44/157 (28.03%), Postives = 80/157 (50.96%), Query Frame = 1 Query: 70 LCSVGAELLNRKWYYDTEAFAKLVRTFDRLDEEIEKRKFDALYKTDDKRRARELKGVENLEKEKNLTETALQATKFKASLVTAVGMISGVWTLNRFFKGLVVFTLPFRAPFPFRLLTHRGLEGDDYRQISVTFMFILTAMLMRRVIDKKLGSPMPKA 540 LC + +E++N +Y TEAF +T E+++K + D A++ K ++ L+ + NL + ++S+V+ + ++ + + V PF F+ LTHRGL+GDDY QIS F+F++ ++ + +ID +PKA Sbjct: 14 LC-ISSEVVNYYLFYRTEAFKNHKKTIILNKEKLKKEESDTSGNV-----AKKKKKIDALKAQLNLATSQGATYMIRSSIVSVLLQFVYMYIVGTVYDKTPVGKFPFTPFGLFQSLTHRGLDGDDYTQISCVFVFVMASVSTKAIIDMIFDFGLPKA 164
BLAST of jgi.p|Trimin1|353056 vs. uniprot
Match: A0A164X6L5_DAUCS (Calcium load-activated calcium channel n=2 Tax=asterids TaxID=71274 RepID=A0A164X6L5_DAUCS) HSP 1 Score: 62.0 bits (149), Expect = 2.150e-8 Identity = 42/162 (25.93%), Postives = 79/162 (48.77%), Query Frame = 1 Query: 52 AVCLAALCSVGAELLNRKWYYDTEAFAKLVRTFDRLDEEIEKRKFDALYKTDDKRRARELKGVENLEKEKNLTETALQATKFKASLVTAVGMISGVWTLNRFFKGLVVFTLPFRAPFPFRLLTHRGLEGDDYRQISVTFMFILTAMLMRRVIDKKLGSPMPK 537 ++C A +C E ++ Y T ++ L T D+ +++E K D ++++ K ++ +E + L KFK+ V A+ + LN F+G V LPF + ++HRGL+G+D+ S+ F++ L ++ +R + K LG P+ Sbjct: 21 SICTAIVC----EAISWLLIYRTSSYKSLKSTIDKASKKLETMKTDPTAPKISAKKSK-TKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGFLNNLFEGKAVAKLPFVPIKLVQKMSHRGLQGEDFTDCSMAFLYFLCSISIRTNLQKFLGFSPPR 177
BLAST of jgi.p|Trimin1|353056 vs. uniprot
Match: A0A0V1MUI7_9BILA (Calcium load-activated calcium channel n=14 Tax=Trichinella TaxID=6333 RepID=A0A0V1MUI7_9BILA) HSP 1 Score: 59.7 bits (143), Expect = 1.390e-7 Identity = 45/178 (25.28%), Postives = 89/178 (50.00%), Query Frame = 1 Query: 31 MALASIAAVCLAALCSVGAELLNRKWYYDTEAFAKLVRTFDRLDEEIEKRKFDALYKTDDKRRARELKGVENLEK-EKNLTETALQATKFKASLVTAVGMI--SGVWTLNRFFKGLVVFTLPFRAPFPFRLLTHRGLEGDDYRQISVTFMFILTAMLMRRVIDKKLGSPMPKALQKKT 555 M L S+ V ++ + E L Y +E + ++ DR + +E++K D+ E LEK E+ L + ++FK + A+G+ + + T + F+G+ + LPF R ++HR L GD++++ S F+++++AM +R+ + K LG +A+ K++ Sbjct: 4 MFLLSLLTVFISLFTAAVGEALTYALVYRSEQYKRMKAEIDRQAKRLERKK--------DQGNEIERSNKRKLEKQEERLKVSNRDLSQFKMRSMFAIGLAFTALLTTFSSIFEGITIAKLPFEPISLMRGISHRNLPGDNFKECSFIFLYVMSAMSIRQSLQKVLGFAPSRAMAKQS 173
BLAST of jgi.p|Trimin1|353056 vs. uniprot
Match: A0A078A2A8_STYLE (Phosphatidylserine decarboxylase n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078A2A8_STYLE) HSP 1 Score: 61.2 bits (147), Expect = 1.940e-7 Identity = 45/149 (30.20%), Postives = 79/149 (53.02%), Query Frame = 1 Query: 112 YDTEAFAKLVRTFDRLDEEIEKRKFDALY-------KTDDKRRARELKGVENLEKEKNLTETALQATKFKASLVTAVGMISGVWTLNRFFKGLVVFTLPFRAPFPFRLLTHRGLEGDDYRQISVTFMFILTAMLMRRVIDKKLGSPMPK 537 Y + + L+ ++L ++IEK+K +Y KT DK+ L+ E+L K+ + LQ + ++ A+ MI V L+ ++G+VV LPF R +THR + G+DY S+ F++IL+ + +R ++ K LG P+ Sbjct: 606 YRHQEYKTLISNVEQLSKKIEKQKEQQIYQGAAAKNKTQDKK----LQQNESLLKQ---YQQDLQKQRMASTFFVALFMIIFVSLLSNAYQGVVVAKLPFEPISFMRNITHRSIVGNDYTDCSMIFIYILSNVSLRPIMQKLLGLSGPR 747
BLAST of jgi.p|Trimin1|353056 vs. uniprot
Match: A0A0L0FIH3_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FIH3_9EUKA) HSP 1 Score: 58.2 bits (139), Expect = 6.280e-7 Identity = 33/85 (38.82%), Postives = 48/85 (56.47%), Query Frame = 1 Query: 280 LQATKFKASLVTAVGMISGVWTLNRFFKGLVVFTLPFRAPFPFRL---LTHRGLEGDDYRQISVTFMFILTAMLMRRVIDKKLGS 525 L K A AV IS + ++N F G+V LPF PF L +THRGL+G+DYR+ S F++++ +R V+ K LG+ Sbjct: 103 LNRMKMFAMFAQAVVFISVMSSVNNTFGGIVFAKLPFM---PFSLAQNITHRGLDGEDYREASFLFIYVMCTTALRPVVPKLLGT 184
BLAST of jgi.p|Trimin1|353056 vs. uniprot
Match: A0A0N4X0T9_HAEPC (Phenylalanine--tRNA ligase beta subunit n=3 Tax=Haemonchidae TaxID=126387 RepID=A0A0N4X0T9_HAEPC) HSP 1 Score: 59.7 bits (143), Expect = 6.430e-7 Identity = 49/174 (28.16%), Postives = 80/174 (45.98%), Query Frame = 1 Query: 55 VCLAALCSVGAELLNRKWYYDTEAFAKLVRTFDRLDEEIEKRKFDALYKTDDKRRARELKGVENLEKEKNLTETALQATKFKASLVTAVGMISGVWTLNRFFKGLVVFTLPFRAPFPF-RLLTHRGLEGDDYRQISVTFMFILTAMLMRRVIDKKLGSPMPKALQKKTFASQWA 573 + +A ++ E L Y +E + +L +R + +EK+K + D + R +E E+ T + K K+ + + + T N F G VV LPF P F + L+HR L GDD R S F++IL M +R+ + K LG +A+ ++ S WA Sbjct: 548 IAIAFCTALAGEGLTYVLVYRSEQYKRLKSEMERKTKRLEKKKQEVGEVVDKNAKKR----LERDEERLKATNRDMSMFKMKSMFAIGLAFTALLSTFNSIFDGRVVARLPF-VPIGFLQGLSHRNLVGDDMRDCSFIFLYILCTMTIRQNLQKALGFAPSRAMNRQQ-GSAWA 715
BLAST of jgi.p|Trimin1|353056 vs. uniprot
Match: A0A830H623_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H623_9CHLO) HSP 1 Score: 58.2 bits (139), Expect = 6.850e-7 Identity = 46/168 (27.38%), Postives = 74/168 (44.05%), Query Frame = 1 Query: 70 LCSVGA----ELLNRKWYYDTEAFAKLVRTFDRLDEEIEKRKFDALYKTDDKRRAREL-----KGVENLEKEKNLTETALQATKFKASLVTAVGMISGVWTLNRFFKGLVVFTLPFRAPFPFRLLTHRGLEGDDYRQISVTFMFILTAMLMRRVIDKKLGSPMPKALQ 546 L SVG+ E LN Y T + L + R + +E K + ++ K + E+ T L K K+++V V + L+ + G+ V LPF P + ++HRGL G+D R S+ F+++L +M + I K LG P+A Q Sbjct: 27 LVSVGSALFCEALNWLVLYRTSTYKSLAESLKRTSKRLESAKAAXXXXXPTSSKGKQASSSKTKKADRFERTMQETSRDLSLVKLKSTVVMTVTLSLMYGVLSASYDGMPVARLPFDPPGFVQGISHRGLVGEDMRDCSMAFLYMLCSMSFKTNIQKALGFAPPRAAQ 194 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353056 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16000 ID=mRNA_16000|Name=jgi.p|Trimin1|353056|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=628bp|location=Sequence derived from alignment at Contig_142:196134..198540- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CCCAAACTTGGCTGAAAGATCACCGTCAGCATGGCTCTCGCCAGCATAGCback to top protein sequence of jgi.p|Trimin1|353056 >Trimin1|353056|estExt_Genemark1.C_Ctg_1420022 ID=Trimin1|353056|estExt_Genemark1.C_Ctg_1420022|Name=jgi.p|Trimin1|353056|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=189bp MALASIAAVCLAALCSVGAELLNRKWYYDTEAFAKLVRTFDRLDEEIEKRback to top mRNA from alignment at Contig_142:196134..198540- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16000 ID=mRNA_16000|Name=jgi.p|Trimin1|353056|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2407bp|location=Sequence derived from alignment at Contig_142:196134..198540- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_142:196134..198540- >mRNA_16000 ID=mRNA_16000|Name=jgi.p|Trimin1|353056|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=567bp|location=Sequence derived from alignment at Contig_142:196134..198540- (Tribonema minus UTEX_B_3156 )back to top |