mRNA_15951 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352572
Unique NamemRNA_15951
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|352572 vs. uniprot
Match: A0A835ZBP8_9STRA (Enkurin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBP8_9STRA)

HSP 1 Score: 756 bits (1952), Expect = 8.900e-271
Identity = 530/530 (100.00%), Postives = 530/530 (100.00%), Query Frame = 1 
Query:    1 MSSTKASRKSATDYERENRLQIKRQXXXXXXXXXXXXXXXXAERELFKLEQFKKVKSKIAQDIAGGSGGGSARSDRDDAAAERHREFLRRGTRETRAEAMRAIHVMERYDTSAMPTPGGSGGVDAXXXXXXXXXXXXXXXXXXXXXXXXGSAGSGAGHKKPQVPRHEDTAQLAPRSTINFIASNRAEAETLKPPAKNDTPEVFRHRSQGAVPSYLLARKLQWAKEEARRRADAPDPDAPRGMVAMPEAERLETLALLRESGADAEKQMXXXXXXXXXXXXXXRAVLVLWHCGQGHKVTRAQLARMPLVVQTPSMRRRRDDLEARLSEIEAAVALFSRDRVYELXXXXXXNTESHAAXXXXXXXAPAAAADXXXXXXXXXXXXXVPAXXXXXXXXXXXXXXAVALAPPVDTGFGAIPDSIAXXXXMGRGFGATPNPYVAAAEAPXXXXXXXXXXXSTVLPPLIIPFENGTGDCAAAAPSSGAYSAPGFARAPLPPHPSVREMLKYWLVAAVILFAALLAGDVYEMNDLTSM 1590
            MSSTKASRKSATDYERENRLQIKRQXXXXXXXXXXXXXXXXAERELFKLEQFKKVKSKIAQDIAGGSGGGSARSDRDDAAAERHREFLRRGTRETRAEAMRAIHVMERYDTSAMPTPGGSGGVDAXXXXXXXXXXXXXXXXXXXXXXXXGSAGSGAGHKKPQVPRHEDTAQLAPRSTINFIASNRAEAETLKPPAKNDTPEVFRHRSQGAVPSYLLARKLQWAKEEARRRADAPDPDAPRGMVAMPEAERLETLALLRESGADAEKQMXXXXXXXXXXXXXXRAVLVLWHCGQGHKVTRAQLARMPLVVQTPSMRRRRDDLEARLSEIEAAVALFSRDRVYELXXXXXXNTESHAAXXXXXXXAPAAAADXXXXXXXXXXXXXVPAXXXXXXXXXXXXXXAVALAPPVDTGFGAIPDSIAXXXXMGRGFGATPNPYVAAAEAPXXXXXXXXXXXSTVLPPLIIPFENGTGDCAAAAPSSGAYSAPGFARAPLPPHPSVREMLKYWLVAAVILFAALLAGDVYEMNDLTSM
Sbjct:    1 MSSTKASRKSATDYERENRLQIKRQXXXXXXXXXXXXXXXXAERELFKLEQFKKVKSKIAQDIAGGSGGGSARSDRDDAAAERHREFLRRGTRETRAEAMRAIHVMERYDTSAMPTPGGSGGVDAXXXXXXXXXXXXXXXXXXXXXXXXGSAGSGAGHKKPQVPRHEDTAQLAPRSTINFIASNRAEAETLKPPAKNDTPEVFRHRSQGAVPSYLLARKLQWAKEEARRRADAPDPDAPRGMVAMPEAERLETLALLRESGADAEKQMXXXXXXXXXXXXXXRAVLVLWHCGQGHKVTRAQLARMPLVVQTPSMRRRRDDLEARLSEIEAAVALFSRDRVYELXXXXXXNTESHAAXXXXXXXAPAAAADXXXXXXXXXXXXXVPAXXXXXXXXXXXXXXAVALAPPVDTGFGAIPDSIAXXXXMGRGFGATPNPYVAAAEAPXXXXXXXXXXXSTVLPPLIIPFENGTGDCAAAAPSSGAYSAPGFARAPLPPHPSVREMLKYWLVAAVILFAALLAGDVYEMNDLTSM 530
[Close]
BLAST of jgi.p|Trimin1|352572 vs. uniprot
Match: A0A812WLU5_SYMMI (Enkd1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WLU5_SYMMI)

HSP 1 Score: 126 bits (317), Expect = 2.110e-29
Identity = 73/183 (39.89%), Postives = 104/183 (56.83%), Query Frame = 1 
Query:  475 KKPQVPRHEDTAQLAPRSTINFIASNRAEAETLKPPAKNDTPEVFRHRSQGAVPSYLLARKLQWAKEEARRRADAPDPDAPRGMVAMPEAERLETLALLRESGADAEKQMXXXXXXXXXXXXXXRAVLVLWHCGQGHKVTRAQLARMPLVVQTPSMRRRRDDLEARLSEIEAAVALFSRDRVY 1023
            +K  VPR ++TA+LAPRS  +FI+ N+ EA+ ++PPA++   E   H + G VP YL  RK QWA     RR +APDP+ P GM  MPE ER+ETL  L  S ++  KQ                                  L RMP V++TPSM+R+++DLE++L EI+ A+ +FS+ +VY
Sbjct:  113 RKASVPRADETARLAPRSGADFISKNKTEAKKMRPPAEHSD-EGGMHEAYGRVPGYLQNRKAQWADAAEERRRNAPDPNCPPGMCLMPEDERIETLRTLNGSKSECMKQ----------------------------------LERMPFVIETPSMKRKQEDLESKLREIDRAIEVFSKPKVY 260
[Close]
BLAST of jgi.p|Trimin1|352572 vs. uniprot
Match: D7FS93_ECTSI (Enkurin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS93_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 6.860e-28
Identity = 75/183 (40.98%), Postives = 101/183 (55.19%), Query Frame = 1 
Query:  475 KKPQVPRHEDTAQLAPRSTINFIASNRAEAETLKPPAKNDTPEVFRHRSQGAVPSYLLARKLQWAKEEARRRADAPDPDAPRGMVAMPEAERLETLALLRESGADAEKQMXXXXXXXXXXXXXXRAVLVLWHCGQGHKVTRAQLARMPLVVQTPSMRRRRDDLEARLSEIEAAVALFSRDRVY 1023
            +K  VPR  D AQLAPRS  +F+A+NR +A  +K    ++    F H S G VP YL++R+ QW +E  RR+A+APDP  P GM  MPE ERL+TL  L+E+ +  +                                  +QL + PLVVQTP ++RR DDL  +L EI+ A A+FSR RVY
Sbjct:  235 RKEAVPRAGDVAQLAPRSDRDFVAANRMQAAEMKAKDVSERDTTFTHDSYGRVPEYLVSRQEQWEREADRRKAEAPDPSCPPGMKLMPEEERLQTLRQLQENESSCQ----------------------------------SQLNKFPLVVQTPLLQRRVDDLNKKLKEIDEAKAIFSRARVY 383
[Close]
BLAST of jgi.p|Trimin1|352572 vs. uniprot
Match: A0A7S2SE64_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SE64_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.410e-27
Identity = 78/184 (42.39%), Postives = 104/184 (56.52%), Query Frame = 1 
Query:  475 KKPQVPRHEDTAQLAPRSTINFIASNRAEAETLKPPAKNDTPE-VFRHRSQGAVPSYLLARKLQWAKEEARRRADAPDPDAPRGMVAMPEAERLETLALLRESGADAEKQMXXXXXXXXXXXXXXRAVLVLWHCGQGHKVTRAQLARMPLVVQTPSMRRRRDDLEARLSEIEAAVALFSRDRVY 1023
            KKP VPR ++  +LAPRST NF+ +NR EA+ L+P  +    E V RH   GAVP Y+  RK +WA+ EARRRA  PDP  P GM  MPE+ERLETL +L ES  +A+                                  + L ++PL   TPS+ +R++ LEA+L EIEAA  +FS+ +VY
Sbjct:  152 KKP-VPRAKEVNRLAPRSTKNFVGANRTEAQRLEPSRRPLEDEGVHRHAEFGAVPKYIQDRKEEWAEAEARRRASMPDPSCPPGMRLMPESERLETLDILLESEREAQ----------------------------------SMLLKLPLQSTTPSVVKRKEVLEAKLQEIEAAKRIFSKQKVY 300
[Close]
BLAST of jgi.p|Trimin1|352572 vs. uniprot
Match: A0A7S2AL47_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AL47_9STRA)

HSP 1 Score: 117 bits (294), Expect = 9.120e-27
Identity = 71/184 (38.59%), Postives = 96/184 (52.17%), Query Frame = 1 
Query:  472 HKKPQVPRHEDTAQLAPRSTINFIASNRAEAETLKPPAKNDTPEVFRHRSQGAVPSYLLARKLQWAKEEARRRADAPDPDAPRGMVAMPEAERLETLALLRESGADAEKQMXXXXXXXXXXXXXXRAVLVLWHCGQGHKVTRAQLARMPLVVQTPSMRRRRDDLEARLSEIEAAVALFSRDRVY 1023
            H KP VPR  +  +LAPR   NF+  N A AE + P  K + P   +H S G  P YL  R+ QWA +E RR A+ PD D P GM  MPE+ERL+TL +L                                  G   ++ +A L +MPL + TPS ++R++ LEA+L EIE+A  +FSR +VY
Sbjct:   60 HAKPTVPRASEPMKLAPRQDKNFVGENVARAERMAPGGKKEEPSRSKHASFGKTPLYLQERQAQWADDEQRRIAEMPDKDCPPGMTLMPESERLDTLRVLE---------------------------------GNEREIQQA-LFKMPLQITTPSQKKRKEALEAKLQEIESAKKIFSRTKVY 209
[Close]
BLAST of jgi.p|Trimin1|352572 vs. uniprot
Match: A0A6H5KWL8_9PHAE (Enkurin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL8_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.800e-22
Identity = 125/323 (38.70%), Postives = 157/323 (48.61%), Query Frame = 1 
Query:  133 ELFKLEQFKKVKSKIAQDIAGGSGGGSARSDRDDAAAER----HREFLRRGTRET-----RAEAMRAIHVMERYDTSAMPTPG----GSGGVD-------------AXXXXXXXXXXXXXXXXXXXXXXXXGSAGSGAGHKKPQVPRHEDTAQLAPRSTINFIASNRAEAETLKPPAKNDTPEVFRHRSQGAVPSYLLARKLQWAKEEARRRADAPDPDAPRGMVAMPEAERLETLALLRESGADAEKQMXXXXXXXXXXXXXXRAVLVLWHCGQGHKVTRAQLARMPLVVQTPSMRRRRDDLEARLSEIEAAVALFSRDRVY 1023
            E FKL QFK VKS+ A + A G+G       +     E+     R+FLRRGTRE      R  A+R           A+   G    G+ G                XXXXXXXXXXXXXXXXXXXXXXXX     G   +K  VPR  D AQLAPRS  +F+A+NR +                       VP YL++R+ QW +E  RR+A+APDP  P GM  MPE ERL+TL  L+E+ +  +                                  +QL + PLVVQTP ++RR DDL  +L EI+ A A+FSR RVY
Sbjct:  142 EPFKLRQFKNVKSRFASEAATGTGTSQGPKTKTPGCGEKTPPASRDFLRRGTREKVATELRQAAVRXXXXXXXXXXXAVTATGSKLFGATGTTYRPSTLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGVTPRKEAVPRAGDVAQLAPRSDRDFVAANRMQ-----------------------VPQYLVSRREQWEREADRRKAEAPDPSCPPGMKLMPEEERLQTLRQLQENESSCQ----------------------------------SQLNKFPLVVQTPLLQRRVDDLNKKLKEIDEAKAIFSRARVY 407
[Close]
BLAST of jgi.p|Trimin1|352572 vs. uniprot
Match: A0A8K1C4T6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4T6_PYTOL)

HSP 1 Score: 100 bits (250), Expect = 1.450e-19
Identity = 67/193 (34.72%), Postives = 99/193 (51.30%), Query Frame = 1 
Query:  472 HKKPQVPR-------HEDTAQLAPRSTINFIASNRAEAETLKPPA--KNDTPEVFRHRSQGAVPSYLLARKLQWAKEEARRRADAPDPDAPRGMVAMPEAERLETLALLRESGADAEKQMXXXXXXXXXXXXXXRAVLVLWHCGQGHKVTRAQLARMPLVVQTPSMRRRRDDLEARLSEIEAAVALFSRDRVY 1023
            H KP VP        +E  A+L  + +++++ SN  E     PP   ++D  +   H S G +P YLL RK QWA EE  RR +APDPD P GMV + E ER++TL +L +S                                  ++  R Q++ +PL ++T S  RR+++LEARL EIE A+ +FS+ +VY
Sbjct:  169 HVKPPVPTRKELEELNEKLAKLRHKESVDYVNSNAWEVIKKSPPKPIQDDNGQNQVHSSFGRIPEYLLQRKEQWAFEEEERRRNAPDPDCPPGMVRLDEDERVKTLGILHQS----------------------------------YEAARRQMSALPLRIETFSQIRRKNELEARLQEIEDAIKVFSKTKVY 327
[Close]
BLAST of jgi.p|Trimin1|352572 vs. uniprot
Match: A0A067C8X7_SAPPC (Enkurin domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C8X7_SAPPC)

HSP 1 Score: 99.0 bits (245), Expect = 2.170e-19
Identity = 68/187 (36.36%), Postives = 90/187 (48.13%), Query Frame = 1 
Query:  523 RSTINFIASNRAEAETLKPPAKNDTP--------EVFRHRSQGAVPSYLLARKLQWAKEEARRRADAPDPDAPRGMVAMPEAERLETLALLRESGADAEKQMXXXXXXXXXXXXXXRAVLVLWHCGQGHKVTRAQLARMPLVVQTPSMRRRRDDLEARLSEIEAAVALFSRDRVYELXXXXXXNTES 1059
            R T++FI SN  E     P  K  TP        E  RH S G VPSYL  RK  WAKEE  RR + PDPD P GMV M + +RL+TLA LRES                                  ++  R Q+ ++PL ++TPS  RR+  LE ++ EIE A+ +F + +V+ L      +T S
Sbjct:  136 RQTVDFINSNAWEVIQKAP--KKPTPTAAELWDIESRRHHSFGQVPSYLRERKAAWAKEEEERRMNLPDPDCPHGMVLMADDDRLDTLATLRES----------------------------------YEAARRQMNQLPLRIETPSQIRRKQALETKMQEIEDAIKVFDKPKVFMLPEALSESTTS 286
[Close]
BLAST of jgi.p|Trimin1|352572 vs. uniprot
Match: A0A485LII5_9STRA (Aste57867_19968 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LII5_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.380e-18
Identity = 64/186 (34.41%), Postives = 92/186 (49.46%), Query Frame = 1 
Query:  493 RHEDTAQLAPRS-TINFIASNRAEAETLKPPAKNDTP------EVFRHRSQGAVPSYLLARKLQWAKEEARRRADAPDPDAPRGMVAMPEAERLETLALLRESGADAEKQMXXXXXXXXXXXXXXRAVLVLWHCGQGHKVTRAQLARMPLVVQTPSMRRRRDDLEARLSEIEAAVALFSRDRVYEL 1029
            R E+  +L  R+  +++I++N        P     TP      E  RHRS G VP+Y+ ARK  WAKEE  RR + PDPD P GM+ MPE ERL TLA LR++   A +QM                                    +PL ++T S  RR++ +EA++ EIE A+ +F + +V+ L
Sbjct:   98 REEELKELVTRNKNVDYISTNAWHVIQQAPKRAEPTPSEIRDAEARRHRSFGEVPAYIRARKAAWAKEEEERRMNLPDPDCPPGMILMPEEERLATLATLRDNYEQARRQMQA----------------------------------LPLRIETLSQIRRKNAVEAQMMEIEDAIKVFDKPKVFML 249
[Close]
BLAST of jgi.p|Trimin1|352572 vs. uniprot
Match: A0A2D4C0L5_PYTIN (Enkurin domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0L5_PYTIN)

HSP 1 Score: 95.9 bits (237), Expect = 2.130e-18
Identity = 61/169 (36.09%), Postives = 87/169 (51.48%), Query Frame = 1 
Query:  523 RSTINFIASNRAEAETLKP--PAKNDTPEVFRHRSQGAVPSYLLARKLQWAKEEARRRADAPDPDAPRGMVAMPEAERLETLALLRESGADAEKQMXXXXXXXXXXXXXXRAVLVLWHCGQGHKVTRAQLARMPLVVQTPSMRRRRDDLEARLSEIEAAVALFSRDRVY 1023
            +  ++++ SN  +     P  P  +D  +  RH S G VP YLL R+  WAKEE  RR +APDP+ P GMV + EAERL+TL +L  S  +A +QM                                    +PL ++TPS  RR+++LEARL EIE A+ +FS+  V+
Sbjct:  114 KERVDYVNSNAWDVIKQAPARPNSSDDEDKARHPSFGRVPMYLLXRREXWAKEEEERRRNAPDPECPPGMVRLDEAERLKTLDVLHRSFGEARQQMNA----------------------------------LPLRIETPSQVRRKNELEARLQEIEDAIKVFSKPXVF 248
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352572 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBP8_9STRA8.900e-271100.00Enkurin domain-containing protein n=1 Tax=Tribonem... [more]
A0A812WLU5_SYMMI2.110e-2939.89Enkd1 protein n=1 Tax=Symbiodinium microadriaticum... [more]
D7FS93_ECTSI6.860e-2840.98Enkurin domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2SE64_9STRA2.410e-2742.39Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2AL47_9STRA9.120e-2738.59Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6H5KWL8_9PHAE3.800e-2238.70Enkurin domain-containing protein n=1 Tax=Ectocarp... [more]
A0A8K1C4T6_PYTOL1.450e-1934.72Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067C8X7_SAPPC2.170e-1936.36Enkurin domain-containing protein n=2 Tax=Saproleg... [more]
A0A485LII5_9STRA1.380e-1834.41Aste57867_19968 protein n=1 Tax=Aphanomyces stella... [more]
A0A2D4C0L5_PYTIN2.130e-1836.09Enkurin domain-containing protein n=1 Tax=Pythium ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_124contigContig_124:110481..116487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352572|estExt_Genemark1.C_Ctg_1240015
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005874,GO:0005881,GO:0015630,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0099080,GO:0099081,GO:0099512,GO:0099513
Preferred nameENKD1
DescriptionCalmodulin-binding
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28MI4@1|root,2QU1P@2759|Eukaryota
Evalue1.06e-28
Seed ortholog2880.D7FS93
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEnkurin domain-containing protein 1
Ec32 orthologEc-05_004890.1
TranscriptId352894
TrackFilteredModels1
ProteinId352572
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352572gene_15951Tribonema minus UTEX_B_3156 geneContig_124 110481..116487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352572Trimin1|352572|estExt_Genemark1.C_Ctg_1240015Tribonema minus UTEX_B_3156 polypeptideContig_124 110499..116487 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15951_11exon_15951_11Tribonema minus UTEX_B_3156 exonContig_124 110481..111068 -
exon_15951_10exon_15951_10Tribonema minus UTEX_B_3156 exonContig_124 111753..111872 -
exon_15951_9exon_15951_9Tribonema minus UTEX_B_3156 exonContig_124 112559..112615 -
exon_15951_8exon_15951_8Tribonema minus UTEX_B_3156 exonContig_124 112694..112738 -
exon_15951_7exon_15951_7Tribonema minus UTEX_B_3156 exonContig_124 112801..112977 -
exon_15951_6exon_15951_6Tribonema minus UTEX_B_3156 exonContig_124 113519..113588 -
exon_15951_5exon_15951_5Tribonema minus UTEX_B_3156 exonContig_124 113946..114125 -
exon_15951_4exon_15951_4Tribonema minus UTEX_B_3156 exonContig_124 114214..114264 -
exon_15951_3exon_15951_3Tribonema minus UTEX_B_3156 exonContig_124 115022..115171 -
exon_15951_2exon_15951_2Tribonema minus UTEX_B_3156 exonContig_124 115952..116101 -
exon_15951_1exon_15951_1Tribonema minus UTEX_B_3156 exonContig_124 116465..116487 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15951UTR3_15951Tribonema minus UTEX_B_3156 three_prime_UTRContig_124 110481..110498 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15951CDS_15951Tribonema minus UTEX_B_3156 CDSContig_124 116465..116487 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15951 ID=mRNA_15951|Name=jgi.p|Trimin1|352572|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1611bp|location=Sequence derived from alignment at Contig_124:110481..116487- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCGACCAAGGCCTCCAGAAAATCCGCCACGGACTACGAGCGTGA
GAACAGGCTGCAAATCAAGCGGCAGCAGGAGGAGAACAGGCGCCGCAAGT
CAGAGGAGGAGGAGCGCGCGGCCGCAGAGCGGGAGCTGTTCAAGCTGGAG
CAGTTCAAGAAAGTCAAGAGCAAGATAGCACAGGATATCGCCGGCGGCAG
CGGCGGCGGCAGCGCCAGAAGTGACAGGGACGATGCGGCGGCGGAGCGGC
ACAGAGAGTTCCTCAGGCGCGGCACGCGGGAGACGCGCGCGGAGGCGATG
CGTGCCATACACGTCATGGAAAGGTACGACACGAGCGCCATGCCGACGCC
CGGCGGCAGCGGCGGCGTGGATGCGTACGACACGAGCGCCATGTCAACGC
CCGGCGGCGGCGGCAGCGTGGACGAGTCGCCGTGCGAGTCGCGGCGCGGC
AGCGCGGGCAGCGGCGCCGGCCACAAGAAGCCGCAGGTGCCTCGGCACGA
GGACACTGCTCAGCTGGCGCCGCGCAGCACCATCAACTTCATCGCCTCCA
ACAGGGCGGAGGCCGAGACGCTCAAGCCGCCCGCAAAGAACGACACGCCG
GAGGTGTTCAGGCACAGGAGTCAGGGCGCCGTGCCCTCCTACCTGCTGGC
GCGCAAGCTGCAGTGGGCCAAGGAGGAGGCGCGGCGGCGCGCAGACGCCC
CCGACCCGGACGCGCCGCGCGGCATGGTCGCCATGCCCGAGGCCGAGCGC
CTCGAGACGCTGGCGCTGCTGCGCGAGAGCGGCGCCGACGCGGAGAAGCA
GATGCTGGCGCTGCTGCACGAGAGCGGCGCCGACGCGGAGAAGCAGCGCG
CGGTTCTGGTGCTCTGGCACTGCGGGCAGGGTCACAAGGTGACGCGCGCG
CAGCTGGCGCGCATGCCGCTGGTGGTACAGACGCCGTCGATGCGGCGGCG
CCGCGATGACCTCGAGGCGCGCCTGTCTGAGATAGAGGCGGCGGTCGCGC
TGTTCAGCAGAGACAGGGTCTACGAACTGGAAGCGGCGGCAGCGCTCAAC
ACAGAGAGCCACGCGGCAGAAGCGGGCGCCACTGCCGCCGCACCCGCTGC
CGCTGCGGATCGCGCGCCCGGTGCCGCAGCAGCAGACGACGCAGCAGCGG
TACCCGCATCAGCAGCAGCGCTCGACACTGCAGCAGTGCCGCCCGCCCCC
GCCGTTGCCCTCGCCCCCCCTGTGGACACCGGGTTTGGCGCAATCCCTGA
CTCTATCGCCCCCCCCGTGGACATGGGGAGGGGGTTCGGCGCGACCCCTA
ACCCCTACGTCGCTGCGGCCGAAGCGCCCCCTTCGACGGCCGCCGCTGCC
GCCGCGCCTGCGTCGACCGTGCTGCCCCCTCTAATCATCCCCTTTGAGAA
TGGCACCGGCGACTGCGCTGCCGCTGCGCCCTCCTCTGGCGCGTACTCGG
CGCCGGGGTTCGCGCGCGCGCCGCTGCCGCCGCACCCGTCCGTGCGTGAG
ATGCTCAAGTACTGGCTGGTCGCGGCGGTGATCCTGTTTGCCGCGCTGCT
CGCGGGCGACGTGTACGAGATGAACGACCTGACGAGCATGTGACGGTTGC
GGGGGCAGGGG
back to top

protein sequence of jgi.p|Trimin1|352572

>Trimin1|352572|estExt_Genemark1.C_Ctg_1240015 ID=Trimin1|352572|estExt_Genemark1.C_Ctg_1240015|Name=jgi.p|Trimin1|352572|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=531bp
MSSTKASRKSATDYERENRLQIKRQQEENRRRKSEEEERAAAERELFKLE
QFKKVKSKIAQDIAGGSGGGSARSDRDDAAAERHREFLRRGTRETRAEAM
RAIHVMERYDTSAMPTPGGSGGVDAYDTSAMSTPGGGGSVDESPCESRRG
SAGSGAGHKKPQVPRHEDTAQLAPRSTINFIASNRAEAETLKPPAKNDTP
EVFRHRSQGAVPSYLLARKLQWAKEEARRRADAPDPDAPRGMVAMPEAER
LETLALLRESGADAEKQMLALLHESGADAEKQRAVLVLWHCGQGHKVTRA
QLARMPLVVQTPSMRRRRDDLEARLSEIEAAVALFSRDRVYELEAAAALN
TESHAAEAGATAAAPAAAADRAPGAAAADDAAAVPASAAALDTAAVPPAP
AVALAPPVDTGFGAIPDSIAPPVDMGRGFGATPNPYVAAAEAPPSTAAAA
AAPASTVLPPLIIPFENGTGDCAAAAPSSGAYSAPGFARAPLPPHPSVRE
MLKYWLVAAVILFAALLAGDVYEMNDLTSM*
back to top

mRNA from alignment at Contig_124:110481..116487-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15951 ID=mRNA_15951|Name=jgi.p|Trimin1|352572|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6007bp|location=Sequence derived from alignment at Contig_124:110481..116487- (Tribonema minus UTEX_B_3156 )
ATGTCATCGACCAAGGCCTCCAGGTATGTACGGGAAGCCCGCCCCGATTT
TTGTGTTTCATTTATCACCAACCGCCAATTAGGTCACTCATCTCTTGAGA
TCACCCATTACGCTCTGGCGGAGCCGACTCGACTCACGCGCTCACCGCTC
ATTTCTTGGCCAAAGGGTTGGTGTTGTCGGGCTCAAGACCTTCAGACGTG
ATGCTGGTGTAGGCAGCTATCATCAACGCAATACATTTGACCTCAGAGGT
TGCACTTCGCAGCCTCGTAGTTGCGTGTACTAGGAAGCAGCCCTTCATGA
CTAGAAACTTGTGTTGTATGCATGCAACAGCCGCCTTCATCCACTCACAA
TGGAGCCAATGTCGTGCTGCTGTCATCGTCGATCAGAAAATCCGCCACGG
ACTACGAGCGTGAGAACAGGCTGCAAATCAAGCGGCAGCAGGAGGAGAAC
AGGCGCCGCAAGTCAGAGGAGGAGGAGCGCGCGGCCGCAGAGCGGGAGCT
GTTCAAGCTGGAGCAGTTCAAGAAAGTCAAGAGCAAGTGCGTACCAAACA
AGGCAATGTCCAACAGACTGCAAGCACATGCAACATCCAGACTGCAAGCA
AGCGCACGCCATCCTGCCTCTTGCTCGTTGCTTCGCACATCGTCTATAGT
CAGTGCAGGGGTACTCTCAGCAAGGTGTATCTCAAGAGATTGGAAAAGAT
ATTTCCATGACGCTGGAGCCTTGCGGGATGTGCTACCGCCCGGTAGCGCT
GCTGTTGCAGTTCATGACGTCGCACTGGGGCAGTCTCAGCGTCACCAAGA
GCGCACGGATCGGTGGAGGCGTTACGTGCACTCTCCCGCGCGACCTTCTC
AATGAAGAGATGCGGCGTGCACCTGCAGTGCCATAGTGCATCGTGCCGGG
GCCGCGCTCTCTCCCTGACCCTAATCTAACCGCAACATCGTTGTCGCTGG
CATCAGAGTTGCGCACGAGCCTACTGCTTAATCGCCGAAGCCGCGCTTGC
AGTGGCGAGCGCGCTGCCGCCTGCACTGCTGACATTATGCGCCACAAAAC
ACAGCGCACAGAGAGGTTTGGGGGCTCGCTTCAGGGTACAATGTCAGACT
TCGGCGCACAAGAGTTGAGGTTTGAGTGTGGGCCGCAGACCGCACTGCGG
GCCGTTGCTTTGCGCAGATTGGGTGAAGGTCAGGGTCAAATCCATTGTTG
CTGATGGTAACACGTCAACGCTATTCAAGTGCTGGTCGTCGCCCCCGCTG
ACAGAGCGCTCAAACTGCCCCCCCCCCCCTCCCGCCCGCCCCCTTCCCCC
CACGCCATGCGTGCAGGATAGCACAGGATATCGCCGGCGGCAGCGGCGGC
GGCAGCGCCAGAAGTGACAGGGACGATGCGGCGGCGGAGCGGCACAGAGA
GTTCCTCAGGCGCGGCACGCGGGAGACGCGCGCGGAGGCGATGCGTGCCA
TACACGTCATGGAAAGGTGAGCGCGCATACATGAGGACCGGCGGTGTTGT
ATATGAAATACCCCAATCGTTACCCTGAACCTAGCCCTAAGGCACGTGTG
AGACGCGCGCGGAGGCGCTGCGCGCCATGCACGTCAATGGAATGGTCAGC
GCGCATACATGGGGACCGGCGGTGGTTTAAGGTATATACCCTTACCCTAA
CCCTAACCCTAGGGTATGCGGGAGACGCGCGCGGAGGCGCTGCGCGCGAT
ACACGTCATGGAACGTACATAATATACTGCTCCAAAGTAGAAATGGTGTG
TTGTCGCGTATTGGGGGGGGGGGGGCGGGGGGGCATGGCCTGTGCGTGGC
GCCGCGGGGCCTCCCCCTTAATGGCCAGTGACATGCGCATGGGTGGGATG
GGTATGCATACGCACAGACCCGCCAACATTTGTTCATGCGGGCGCGCTGT
CGTGAGCGCGGGCAGGCACCACCCACACGTCATATTGAATGCGGCCCTGC
CACACCTGCATGTATGCACACGCCAGGCACGTACGCCCTGGCATTCTCGA
CGCGCTGCGGGCGCAGCGTGGGCGAGCTGCCGTGCCGCTGTTCACTGCAC
CCCATCTGTACTGCAATGTACCCCATCTGTCCTACACTGTACTGCATGTG
AACTTGCGCCCAGGTATGACACGAGCGCCACGTCGACGCCCGGCGGTGGC
GGCAGCGTGGACCAATTGTCCACTGTATCTCATCTGTACTGCACTTGTAC
TGCATATCAACTCCTGCACACAGGTACGACACGAGCGCCATGCCGACGCC
CGGCGGCAGCGGCGGCGTGGATGCGTCGCCGAGCCACTGTTCACTGTACC
CCATCTGTACTGCAATGTACCCCATTTGTCCTGCACTGTACTGCATGTGA
ACTTGCACGCAGGTACGACACGAGCGCCATGTCAACGCCCGGCGGCGGCG
GCAGCGTGGACGAGTCGCCGTGCGAGTCGCGGCGCGGCAGCGCGGGCAGC
GGCGCCGGCCACAAGAAGCCGCAGGTGCCTCGGCACGAGGACACTGCTCA
GCTGGCGCCGCGCAGCACCATCAACTTCATCGCCTCCAACAGGTACAGTG
GAAATTTGTGAGTTGAAGTAGATATGCGAAGTATGAGCACCAACAACGTC
ATCGCGTCCAACAGGTACAGCATGAATTCGTGAGGTGAAGTAGATATGTG
AAGTATGCACCATCACGTCATTGCCTCCGACAGGTACAGCGAGCGGTGCA
CGGCGTGTGTTGAAGTTGAAGTAGGAAAAGGATGAGCAGTACCATCTATA
TATGCCCCTCCGCATGCACGAGAACTGGCCAATGCTCATCATTCAAACAG
CGAGGCAAGCCGTAGAGGGCATGGATCATCTATGCGCGCTGCTCACTGTC
GCTGAGCGTTGCTGCGTCTGCTGCCGCTGCTGATCGCTGACACGTGCAGG
GCGGAGGCCGAGACGCTCAAGCCGCCCGCAAAGAACGACACGCCGGAGGT
GTTCAGGCACAGGAGTCAGGTGAGCGCTGCTGCGCTGCGCGCCGTTTGGA
GGACGTTGAAATTGAAGTTTGTGGACGGAGACCGGCCCTGCCACCTCTCA
CCTTCTTGGTCTGTGTGCTGCAATTTGATGACCGCGCGCACTGTTCAGAG
GACGTTGAGATTGAAGCCTGTGCGGTGAGCCGGCATCGCCCCTTGGTCTG
TGTGCTGCACTTTAAAGACTGCTAGCAGCGAGGCGTTTCGGACGCGGCTG
CCACGCACGCGCAGCGTGACGCGGCCGGGCCGTGGTGACCAGATCTGAGC
GCTGCTGCGGGACACCGGAGCGCTGTTGCGCGCTGCATGTATGGAACGTG
GTGCGCGATCACAACTGCGCACGACAGCTAGCTCTGCCGATCTCTGAGTG
GGGCGCCGTGTCACCTACCCGCGGTGCGCAAGCTGCATTGGGCGAAGGAG
CAGGCGCGGCATCGCCCATGCTGAACTTGAGCACTGCAGCGTGATGGCAA
ACGTTGAGTGTATGCATGTGTATGTGATCTTTTGACTCGTTTCCACGTTG
CCGTGTGCAGGGCGCCGTGCCCTCCTACCTGCTGGCGCGCAAGCTGCAGT
GGGCCAAGGAGGAGGCGCGGCGGCGCGCAGACGCCCCCGACCCGGACGCG
CCGCGCGGCATGGTCGCCATGCCCGAGGCCGAGCGCCTCGAGACGCTGGC
GCTGCTGCGCGAGAGCGGCGCCGACGCGGAGAAGCAGGTGCGTCGCCACT
TGAGGTTTCGTGTGAAGTAAAGTAGTGATGCCCACTGCTGCGTGTCGAGA
TGCTGGCGCTGCTGCACGAGAGCGGCGCCGACGCGGAGAAGCAGGTGCGT
CACCGCTTGAGGTTTTGCGCACACGCGGGTGAAGTAGTATGCGTATTGCT
GCTGCGTGTCGAGAAGCGGTAGCGCGCGGTTCTGGTGCTCTGGCACTGCG
GGCAGGGTCACAAGGTGACGCGCGCGCAGGTGAGGTAGTACGCCTGCTGC
TGCGTGTGAAGGTGCAGTAGTGTATCGGTGCTCTGGTGCTGGCGCGGTGT
TTGACTTGGTCGGCGGCGGCGCCATGTACCGAGCTCATGAAGTGTGCTGC
ATGGTGCATTTTGCGCCTCACATTTAAGATGAGGTTGGGGGTTGGTAGGA
CTGCCACGAGCGGGCAGTGCAGCAGCCGAGCAAGGGTCTCTCACCGCCTT
TGACTGCTGAATTGTAGGTCAGCCCTACGGTTAGGTCTTTGTAGGGCAGT
CAGTGCTCACCGCCCCGCTCTGAACCACCGCCCCTGTGGCCGGGGGCCGA
TTTAATGTGACTGTGGGCAGCGATCAGAGGCGCAGCGTGCACTGCCGCCG
CCGCCGCACTCATGTCGGTGTCACACTGCCCCCGTGCTATATACATGTGT
CGGTGGGCACCGAGCTGAACCATCCAGGACCCTGGGCCCCCACGCAAGTA
TGTAAGTTTAATGACAGATTTGACGTTGGTATAGGGGGTTCGTTCTAGAC
TTCCCCCGTGCCGCAAGCCATACATACCCCCCGCCCCCTCAGTAACCTCG
CATCCCGGGAATCCGAACGAAAGTAGCGGCTAGGGCGAAGTGGTCTCACA
CCACCGCCCCCTTCCCCCCCCCCCGTACGTGTGTGCCCCCCCCGTCGCCT
GCCGTCCCACCGCAGCTGGCGCGCATGCCGCTGGTGGTACAGACGCCGTC
GATGCGGCGGCGCCGCGATGACCTCGAGGCGCGCCTGTCTGAGATAGAGG
CGGCGGTCGCGCTGTTCAGCAGAGACAGGGTCTACGTCGCGCGCGAAGAT
AGGGGCTAGGTACGTAGGTATGTGCGCGGGGGCTGCGGAGTGCGCCTCTA
TGAGTTAGAGGCAGCGGTCGCGCAGTTCAGCAGAGACAGGGTCTATGTCG
CGCGCGAAGATAGTGGCTACGTATGTAGGTGTGCGGGGGTTTGAGGGGTG
CGCCTCTTTGGCGTAGAGGCAGCGGTCGCGCTGTAGATATTTAGCTGTGT
GGGGGTTGAGCTATGTTCAGCAGAGTATTCTATGTGGCATGATGATGGTA
TGTACTTGTATAGCGCGGGCCTGCTTGTACCGCATGTTGTGACTCACAAC
TGGCGGGATCTTGTGCGTAGCGCTGGGTCCGGACCACGCCGACGCTACCA
GTGACTGTATGCTTGAAGATTAACGTTTTTCAAAGGATGAACAAATGTAT
GGGTCCCTCCGTTGTTGGAACCTTGCACCAGTTTTGCTATGTAGCGCAAG
CAAATGCAAGGTCTCTCTGATGTCAAATTTACAGCGATACTTCGAAGTAC
ATACTGCTGATGTGTTGGTATTTAAAACTTTATACTACTCCAGTGGAGCC
TGCAGCGCCCTTCACAGCTGGTACCTGATCCACACTCCCTCAAAGAACCA
TTCAAATTGCCCAGGCACATTTGAGGCGGCTGACTCTAACAATTGCAGGC
GCTTTATCCCATTGCTCAGGAACTGGAAGCGGCGGCAGCGCTCAACACAG
AGAGCCACGCGGCAGAAGCGGGCGCCACTGCCGCCGCACCCGCTGCCGCT
GCGGATCGCGCGCCCGGTGCCGCAGCAGCAGACGACGCAGCAGCGGTACC
CGCATCAGCAGCAGCGCTCGACACTGCAGCAGTGCCGCCCGCCCCCGCCG
TTGCCCTCGCCCCCCCTGTGGACACCGGGTTTGGCGCAATCCCTGACTCT
ATCGCCCCCCCCGTGGACATGGGGAGGGGGTTCGGCGCGACCCCTAACCC
CTACGTCGCTGCGGCCGAAGCGCCCCCTTCGACGGCCGCCGCTGCCGCCG
CGCCTGCGTCGACCGTGCTGCCCCCTCTAATCATCCCCTTTGAGAATGGC
ACCGGCGACTGCGCTGCCGCTGCGCCCTCCTCTGGCGCGTACTCGGCGCC
GGGGTTCGCGCGCGCGCCGCTGCCGCCGCACCCGTCCGTGCGTGAGATGC
TCAAGTACTGGCTGGTCGCGGCGGTGATCCTGTTTGCCGCGCTGCTCGCG
GGCGACGTGTACGAGATGAACGACCTGACGAGCATGTGACGGTTGCGGGG
GCAGGGG
back to top

Coding sequence (CDS) from alignment at Contig_124:110481..116487-

>mRNA_15951 ID=mRNA_15951|Name=jgi.p|Trimin1|352572|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1593bp|location=Sequence derived from alignment at Contig_124:110481..116487- (Tribonema minus UTEX_B_3156 )
ATGTCATCGACCAAGGCCTCCAGAAAATCCGCCACGGACTACGAGCGTGA
GAACAGGCTGCAAATCAAGCGGCAGCAGGAGGAGAACAGGCGCCGCAAGT
CAGAGGAGGAGGAGCGCGCGGCCGCAGAGCGGGAGCTGTTCAAGCTGGAG
CAGTTCAAGAAAGTCAAGAGCAAGATAGCACAGGATATCGCCGGCGGCAG
CGGCGGCGGCAGCGCCAGAAGTGACAGGGACGATGCGGCGGCGGAGCGGC
ACAGAGAGTTCCTCAGGCGCGGCACGCGGGAGACGCGCGCGGAGGCGATG
CGTGCCATACACGTCATGGAAAGGTACGACACGAGCGCCATGCCGACGCC
CGGCGGCAGCGGCGGCGTGGATGCGTACGACACGAGCGCCATGTCAACGC
CCGGCGGCGGCGGCAGCGTGGACGAGTCGCCGTGCGAGTCGCGGCGCGGC
AGCGCGGGCAGCGGCGCCGGCCACAAGAAGCCGCAGGTGCCTCGGCACGA
GGACACTGCTCAGCTGGCGCCGCGCAGCACCATCAACTTCATCGCCTCCA
ACAGGGCGGAGGCCGAGACGCTCAAGCCGCCCGCAAAGAACGACACGCCG
GAGGTGTTCAGGCACAGGAGTCAGGGCGCCGTGCCCTCCTACCTGCTGGC
GCGCAAGCTGCAGTGGGCCAAGGAGGAGGCGCGGCGGCGCGCAGACGCCC
CCGACCCGGACGCGCCGCGCGGCATGGTCGCCATGCCCGAGGCCGAGCGC
CTCGAGACGCTGGCGCTGCTGCGCGAGAGCGGCGCCGACGCGGAGAAGCA
GATGCTGGCGCTGCTGCACGAGAGCGGCGCCGACGCGGAGAAGCAGCGCG
CGGTTCTGGTGCTCTGGCACTGCGGGCAGGGTCACAAGGTGACGCGCGCG
CAGCTGGCGCGCATGCCGCTGGTGGTACAGACGCCGTCGATGCGGCGGCG
CCGCGATGACCTCGAGGCGCGCCTGTCTGAGATAGAGGCGGCGGTCGCGC
TGTTCAGCAGAGACAGGGTCTACGAACTGGAAGCGGCGGCAGCGCTCAAC
ACAGAGAGCCACGCGGCAGAAGCGGGCGCCACTGCCGCCGCACCCGCTGC
CGCTGCGGATCGCGCGCCCGGTGCCGCAGCAGCAGACGACGCAGCAGCGG
TACCCGCATCAGCAGCAGCGCTCGACACTGCAGCAGTGCCGCCCGCCCCC
GCCGTTGCCCTCGCCCCCCCTGTGGACACCGGGTTTGGCGCAATCCCTGA
CTCTATCGCCCCCCCCGTGGACATGGGGAGGGGGTTCGGCGCGACCCCTA
ACCCCTACGTCGCTGCGGCCGAAGCGCCCCCTTCGACGGCCGCCGCTGCC
GCCGCGCCTGCGTCGACCGTGCTGCCCCCTCTAATCATCCCCTTTGAGAA
TGGCACCGGCGACTGCGCTGCCGCTGCGCCCTCCTCTGGCGCGTACTCGG
CGCCGGGGTTCGCGCGCGCGCCGCTGCCGCCGCACCCGTCCGTGCGTGAG
ATGCTCAAGTACTGGCTGGTCGCGGCGGTGATCCTGTTTGCCGCGCTGCT
CGCGGGCGACGTGTACGAGATGAACGACCTGACGAGCATGTGA
back to top