mRNA_15928 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|136726
Unique NamemRNA_15928
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Match: A0A835Z1N5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1N5_9STRA)

HSP 1 Score: 250 bits (638), Expect = 9.880e-75
Identity = 448/448 (100.00%), Postives = 448/448 (100.00%), Query Frame = 1
Query:    1 TELSLKVEAELLGQYDELVPGPMPGQRARPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFQQGIWACPAAPHRVRLFXXXXXXXXXXXXXXXXXXXXRHALEEDPSSVPTLVXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXYEAMELRAGNAREARDVYERGLAASMAR 1344
            TELSLKVEAELLGQYDELVPGPMPGQRARPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFQQGIWACPAAPHRVRLFXXXXXXXXXXXXXXXXXXXXRHALEEDPSSVPTLVXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXYEAMELRAGNAREARDVYERGLAASMAR
Sbjct:    1 TELSLKVEAELLGQYDELVPGPMPGQRARPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFQQGIWACPAAPHRVRLFXXXXXXXXXXXXXXXXXXXXRHALEEDPSSVPTLVXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXYEAMELRAGNAREARDVYERGLAASMAR 448          
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Match: A0A7S4DG14_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG14_HETAK)

HSP 1 Score: 129 bits (324), Expect = 1.040e-29
Identity = 67/115 (58.26%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 TELSLKVEAELLGQYDELVPGPMPGQR-ARPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEE 342
            T LS KV +EL+  YDE VPGP P +  AR LPINLDL++Y A+QAMI GD    +R+YK+C+ELDPRDGR W+ LAR+E ++     A  L+  GL+ S  NPYLLQAYGVMEE
Sbjct:  116 TTLSKKVYSELMSTYDEQVPGPDPSKPPARALPINLDLMTYHARQAMIKGDEAVGLRIYKKCLELDPRDGRAWLALARHESRRKRFEVAEKLFLKGLTYSRGNPYLLQAYGVMEE 230          
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Match: D7FP63_ECTSI (PsbB mRNA maturation factor Mbb1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP63_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.060e-28
Identity = 73/128 (57.03%), Postives = 84/128 (65.62%), Query Frame = 1
Query:    1 TELSLKVEAELLGQYDELVPGPMP------------GQR--ARPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEE 342
            TELS KVEAEL  +YD +VPGP              GQ    RPL INLDLLSY+AKQ  + G+  EA RLY+ CVELDPRDGRGW+GLAR   K     +A+ L+E GL N  DNPYLLQA+ VMEE
Sbjct:  296 TELSAKVEAELFEEYDAMVPGPAASAVGNNAGGDGAGQERTGRPLKINLDLLSYQAKQKNMKGNYREARRLYRTCVELDPRDGRGWLGLARQMQKIHKYDKAQRLFEAGLENCADNPYLLQAFAVMEE 423          
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Match: A0A7S1XW26_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XW26_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.190e-21
Identity = 53/110 (48.18%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    1 TELSLKVEAELLGQYDELVPGPMPGQRARPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYG 330
            ++LS +VE  LL  YDE VP P P  R RPL +NLDLL+Y A+     G   EAV++++RC+ LDP DGR W+ LAR     G   +A+ L+E G+   P NP++LQAYG
Sbjct:   22 SDLSRRVEESLLALYDEQVPAP-PKARRRPLKVNLDLLNYSARNLKRKGRLNEAVKVWQRCLRLDPHDGRAWLALARMSANAGGHTKAKQLFEEGIRFCPGNPFILQAYG 130          
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Match: A0A7S3B3F3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B3F3_9EUKA)

HSP 1 Score: 89.0 bits (219), Expect = 1.080e-16
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   82 ARPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEE 342
            +RPL INLDLL+++A+  +  GD   A   YKRC++L+P+DGR W+GL++   +QG    A  L + GL   P NPYLLQA+G ++E
Sbjct:   64 SRPLRINLDLLTHRARVLVQRGDRKGAAATYKRCMQLEPQDGRAWLGLSQLRRRQGREEEAARLLQGGLRVDPANPYLLQAWGTLQE 150          
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Match: A0A7S2XUS2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUS2_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.220e-15
Identity = 47/133 (35.34%), Postives = 72/133 (54.14%), Query Frame = 1
Query:   40 QYDELVPGP----------MPGQRARPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQG----------------------NSARARALWETGLSNSPDNPYLLQAYGVMEE 342
            ++D  +PGP           P  + RP+ ++ DLL+++AKQA+   + T A  LY+RC++L+PRD R W+GLAR E + G                      N  +A+ +++ GL   P+NPYLLQ  GV+EE
Sbjct:    6 RFDVQIPGPDAGGISPVVQKPPVKTRPVGLHFDLLAHQAKQALRNKNVTLAAALYRRCLQLNPRDARAWLGLARIETRGGVPLPTKGNAEGPGKPRHWSSHLNYVKAKEIYQQGLRRCPNNPYLLQGLGVLEE 138          
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Match: W7TNM5_9STRA (PsbB mRNA maturation factor n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNM5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 5.440e-15
Identity = 49/113 (43.36%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    7 LSLKVEAELLGQYDELVPGPMPGQRA-RPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEE 342
            LS  V   +L +  + V  P    R  +PLP  LDLL+Y AK+A+   +  EA R+Y+RC+ELD  DGR ++GLAR E ++ N   A+A++E  L    DNP++LQAYGV ++
Sbjct:  291 LSKAVNERMLEEKFDNVRAPYREPREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQ 403          
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Match: A0A7S1TD61_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD61_9RHOD)

HSP 1 Score: 86.3 bits (212), Expect = 1.960e-14
Identity = 46/116 (39.66%), Postives = 72/116 (62.07%), Query Frame = 1
Query:    7 LSLKVEAELLGQYDELVP---GPMPGQR-ARPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEE 342
            L  KV+  L+ + D + P   G +     +RPL IN+DL  + A+Q+   G+++EA+RL++RCV++DP DGRGW+GLAR    +G    +R  +   +     N +LLQA+G+MEE
Sbjct:   31 LERKVKEVLMDEEDRVPPLGAGSLENYLPSRPLKINVDLSHFHARQSQKRGNSSEALRLFRRCVDMDPYDGRGWLGLARLLFLRGEEEASRETFRNAVRYCRSNSHLLQAWGIMEE 146          
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Match: A0A5J4YY57_PORPP (PsbB mRNA maturation factor Mbb1, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YY57_PORPP)

HSP 1 Score: 75.1 bits (183), Expect = 9.950e-11
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   91 LPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEE 342
            L IN+DL   +A+ A+      EA RL++RCVEL+  D RGW+GLAR E ++ N    R ++   L     +PYLLQA+GV+E+
Sbjct:  178 LKINVDLAHSRARSAVKRAQLDEAARLFRRCVELNRYDARGWLGLARIEFRRKNYEEMRRVFSAALKLLRKSPYLLQAWGVLEQ 261          
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Match: A0A1Z5JMI6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMI6_FISSO)

HSP 1 Score: 74.7 bits (182), Expect = 1.410e-10
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 1
Query:   91 LPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNS-------PD---NPYLLQAYGVMEE 342
            LPIN D L+Y AK+ M  G   EA  LY+R VE+DPRDGR ++GL+R   ++ +   AR     G++NS       PD   NP+LLQA G +EE
Sbjct:  261 LPINADRLNYMAKKEMKKGRVEEAEELYERAVEIDPRDGRAYLGLSRCAQRRQDFKLAREWLNLGIANSASTFNGNPDRGANPFLLQALGCLEE 354          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A835Z1N5_9STRA9.880e-75100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S4DG14_HETAK1.040e-2958.26Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7FP63_ECTSI1.060e-2857.03PsbB mRNA maturation factor Mbb1 n=2 Tax=Ectocarpu... [more]
A0A7S1XW26_9STRA1.190e-2148.18Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3B3F3_9EUKA1.080e-1647.13Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S2XUS2_9STRA1.220e-1535.34Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W7TNM5_9STRA5.440e-1543.36PsbB mRNA maturation factor n=3 Tax=Monodopsidacea... [more]
A0A7S1TD61_9RHOD1.960e-1439.66Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A5J4YY57_PORPP9.950e-1144.05PsbB mRNA maturation factor Mbb1, chloroplastic n=... [more]
A0A1Z5JMI6_FISSO1.410e-1045.74Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_210contigContig_210:158608..159951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|136726|gw1.210.40.1
BRITEko00000,ko00001,ko01000,ko04131
KEGG rclassRC00002,RC00078
KEGG ReactionR00429
KEGG Pathwayko00230,map00230
KEGG koko:K00951,ko:K20310
EC2.7.6.5
Descriptioncellular component assembly
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0457@1|root,KOG1124@2759|Eukaryota
Evalue1.74e-29
Seed ortholog2880.D7FP63
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPsbB mRNA maturation factor Mbb1
Ec32 orthologEc-08_000700.1
TranscriptId137048
TrackFilteredModels1
ProteinId136726
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136726gene_15928Tribonema minus UTEX_B_3156 geneContig_210 158608..159951 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15928_1exon_15928_1Tribonema minus UTEX_B_3156 exonContig_210 158608..159951 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15928CDS_15928Tribonema minus UTEX_B_3156 CDSContig_210 158608..159951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136726Trimin1|136726|gw1.210.40.1Tribonema minus UTEX_B_3156 polypeptideContig_210 158608..159951 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15928 ID=mRNA_15928|Name=jgi.p|Trimin1|136726|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1344bp|location=Sequence derived from alignment at Contig_210:158608..159951- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACCGAGCTGAGCCTCAAGGTCGAGGCGGAGCTCCTGGGGCAATACGACGA
ACTTGTGCCGGGCCCTATGCCCGGTCAACGGGCCAGGCCGCTTCCCATCA
ACCTGGACCTGCTGTCTTACAAGGCCAAGCAGGCCATGATCGCCGGCGAT
GCAACGGAGGCAGTGCGCCTGTACAAGCGGTGCGTAGAGTTGGACCCTCG
GGACGGCAGGGGGTGGATGGGCCTGGCCCGGTACGAAATGAAGCAGGGCA
ACAGCGCGCGGGCGAGGGCCCTGTGGGAGACGGGTCTCAGCAACTCTCCG
GACAACCCGTACCTGCTGCAGGCCTACGGGGTGATGGAGGAGAAGCTGGG
CAATTACGCCCGCGCGCTAGAGCTCTACACCACCGCCACGAGGGTGGACT
CCACCCACGCCGCCAGCTGGGTGGCGTTGGCGATGCTGTACCAGCGGCGG
CGGCGCGTCCCGGAGGCGCGGCGCTGCTTCGAGGCGGCGACGGCGGCGGC
GCCCGGCAGCTACTACGCGTGGCAGGCCTGGGGGGTGCTGGAGGAATCGC
AGGGCGACTACGACGCGGCGCGCGACAAGTTCAAGGCGTCGGCGCGCGCC
AACTCGCGCAACGCCGCGCTGTTCCAGGCGTGGGGCGTCATGGAGGCGCG
CCTCGCCAACTACCGCACCGCGGAGGAGCTGTTCCGGCGCGGCCTCGCGG
AGAACCCCAAGTCGTCCTTCACGCTGCAGGCGTGGGCGGTCATGGAGGCG
CGCCGCGGGCGCACCGCGCAGGCCATCGCGCTCTTCCGCCGCGCCATCGA
GCTGCGGCCGCGAGACGCCGCCGTCCACCAGGCGTACGGCCTCGTGCTCA
AGGGCGCGGGCGACGTCGCGGGCGCGCGCGCGGCGCTGCGGCGCGCGACG
CGCGCGGACCCGCGCCACGCGCCCTCGTGGCAGGCGCTCGGCGCGCTCGA
GGCGGAGGCGGGCGACGCCGACGCCGCGCGCGCGACGTTCCAGCAGGGCA
TCTGGGCGTGCCCCGCGGCGCCGCACCGCGTGCGCCTCTTCCAGGCGTGG
GGCGTGCTCGAGGCGCGCGCGGGGCGCCCCGCGGACGCGCGCGCGTGCTT
CCGCCACGCCCTCGAGGAGGACCCGTCGTCCGTCCCGACGCTCGTCGCGT
GGGCGCTCATGGAGGCGGCGGCGGGCGTCCCCGTGCGCGCGCGCGCGCTC
TTCGAGGTCGCCGTTGGCGCCGCCGCCACCGCCGCCGCCGCCGCGTCCGT
CTGGGCCGCGTACGAGGCGATGGAGCTGCGCGCCGGCAACGCGCGCGAGG
CGCGCGACGTGTACGAGCGCGGCCTGGCGGCGTCCATGGCACGC
back to top

protein sequence of jgi.p|Trimin1|136726

>Trimin1|136726|gw1.210.40.1 ID=Trimin1|136726|gw1.210.40.1|Name=jgi.p|Trimin1|136726|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=448bp
TELSLKVEAELLGQYDELVPGPMPGQRARPLPINLDLLSYKAKQAMIAGD
ATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSP
DNPYLLQAYGVMEEKLGNYARALELYTTATRVDSTHAASWVALAMLYQRR
RRVPEARRCFEAATAAAPGSYYAWQAWGVLEESQGDYDAARDKFKASARA
NSRNAALFQAWGVMEARLANYRTAEELFRRGLAENPKSSFTLQAWAVMEA
RRGRTAQAIALFRRAIELRPRDAAVHQAYGLVLKGAGDVAGARAALRRAT
RADPRHAPSWQALGALEAEAGDADAARATFQQGIWACPAAPHRVRLFQAW
GVLEARAGRPADARACFRHALEEDPSSVPTLVAWALMEAAAGVPVRARAL
FEVAVGAAATAAAAASVWAAYEAMELRAGNAREARDVYERGLAASMAR
back to top

mRNA from alignment at Contig_210:158608..159951-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15928 ID=mRNA_15928|Name=jgi.p|Trimin1|136726|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1344bp|location=Sequence derived from alignment at Contig_210:158608..159951- (Tribonema minus UTEX_B_3156 )
ACCGAGCTGAGCCTCAAGGTCGAGGCGGAGCTCCTGGGGCAATACGACGA ACTTGTGCCGGGCCCTATGCCCGGTCAACGGGCCAGGCCGCTTCCCATCA ACCTGGACCTGCTGTCTTACAAGGCCAAGCAGGCCATGATCGCCGGCGAT GCAACGGAGGCAGTGCGCCTGTACAAGCGGTGCGTAGAGTTGGACCCTCG GGACGGCAGGGGGTGGATGGGCCTGGCCCGGTACGAAATGAAGCAGGGCA ACAGCGCGCGGGCGAGGGCCCTGTGGGAGACGGGTCTCAGCAACTCTCCG GACAACCCGTACCTGCTGCAGGCCTACGGGGTGATGGAGGAGAAGCTGGG CAATTACGCCCGCGCGCTAGAGCTCTACACCACCGCCACGAGGGTGGACT CCACCCACGCCGCCAGCTGGGTGGCGTTGGCGATGCTGTACCAGCGGCGG CGGCGCGTCCCGGAGGCGCGGCGCTGCTTCGAGGCGGCGACGGCGGCGGC GCCCGGCAGCTACTACGCGTGGCAGGCCTGGGGGGTGCTGGAGGAATCGC AGGGCGACTACGACGCGGCGCGCGACAAGTTCAAGGCGTCGGCGCGCGCC AACTCGCGCAACGCCGCGCTGTTCCAGGCGTGGGGCGTCATGGAGGCGCG CCTCGCCAACTACCGCACCGCGGAGGAGCTGTTCCGGCGCGGCCTCGCGG AGAACCCCAAGTCGTCCTTCACGCTGCAGGCGTGGGCGGTCATGGAGGCG CGCCGCGGGCGCACCGCGCAGGCCATCGCGCTCTTCCGCCGCGCCATCGA GCTGCGGCCGCGAGACGCCGCCGTCCACCAGGCGTACGGCCTCGTGCTCA AGGGCGCGGGCGACGTCGCGGGCGCGCGCGCGGCGCTGCGGCGCGCGACG CGCGCGGACCCGCGCCACGCGCCCTCGTGGCAGGCGCTCGGCGCGCTCGA GGCGGAGGCGGGCGACGCCGACGCCGCGCGCGCGACGTTCCAGCAGGGCA TCTGGGCGTGCCCCGCGGCGCCGCACCGCGTGCGCCTCTTCCAGGCGTGG GGCGTGCTCGAGGCGCGCGCGGGGCGCCCCGCGGACGCGCGCGCGTGCTT CCGCCACGCCCTCGAGGAGGACCCGTCGTCCGTCCCGACGCTCGTCGCGT GGGCGCTCATGGAGGCGGCGGCGGGCGTCCCCGTGCGCGCGCGCGCGCTC TTCGAGGTCGCCGTTGGCGCCGCCGCCACCGCCGCCGCCGCCGCGTCCGT CTGGGCCGCGTACGAGGCGATGGAGCTGCGCGCCGGCAACGCGCGCGAGG CGCGCGACGTGTACGAGCGCGGCCTGGCGGCGTCCATGGCACGC
back to top

Coding sequence (CDS) from alignment at Contig_210:158608..159951-

>mRNA_15928 ID=mRNA_15928|Name=jgi.p|Trimin1|136726|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1344bp|location=Sequence derived from alignment at Contig_210:158608..159951- (Tribonema minus UTEX_B_3156 )
ACCGAGCTGAGCCTCAAGGTCGAGGCGGAGCTCCTGGGGCAATACGACGA
ACTTGTGCCGGGCCCTATGCCCGGTCAACGGGCCAGGCCGCTTCCCATCA
ACCTGGACCTGCTGTCTTACAAGGCCAAGCAGGCCATGATCGCCGGCGAT
GCAACGGAGGCAGTGCGCCTGTACAAGCGGTGCGTAGAGTTGGACCCTCG
GGACGGCAGGGGGTGGATGGGCCTGGCCCGGTACGAAATGAAGCAGGGCA
ACAGCGCGCGGGCGAGGGCCCTGTGGGAGACGGGTCTCAGCAACTCTCCG
GACAACCCGTACCTGCTGCAGGCCTACGGGGTGATGGAGGAGAAGCTGGG
CAATTACGCCCGCGCGCTAGAGCTCTACACCACCGCCACGAGGGTGGACT
CCACCCACGCCGCCAGCTGGGTGGCGTTGGCGATGCTGTACCAGCGGCGG
CGGCGCGTCCCGGAGGCGCGGCGCTGCTTCGAGGCGGCGACGGCGGCGGC
GCCCGGCAGCTACTACGCGTGGCAGGCCTGGGGGGTGCTGGAGGAATCGC
AGGGCGACTACGACGCGGCGCGCGACAAGTTCAAGGCGTCGGCGCGCGCC
AACTCGCGCAACGCCGCGCTGTTCCAGGCGTGGGGCGTCATGGAGGCGCG
CCTCGCCAACTACCGCACCGCGGAGGAGCTGTTCCGGCGCGGCCTCGCGG
AGAACCCCAAGTCGTCCTTCACGCTGCAGGCGTGGGCGGTCATGGAGGCG
CGCCGCGGGCGCACCGCGCAGGCCATCGCGCTCTTCCGCCGCGCCATCGA
GCTGCGGCCGCGAGACGCCGCCGTCCACCAGGCGTACGGCCTCGTGCTCA
AGGGCGCGGGCGACGTCGCGGGCGCGCGCGCGGCGCTGCGGCGCGCGACG
CGCGCGGACCCGCGCCACGCGCCCTCGTGGCAGGCGCTCGGCGCGCTCGA
GGCGGAGGCGGGCGACGCCGACGCCGCGCGCGCGACGTTCCAGCAGGGCA
TCTGGGCGTGCCCCGCGGCGCCGCACCGCGTGCGCCTCTTCCAGGCGTGG
GGCGTGCTCGAGGCGCGCGCGGGGCGCCCCGCGGACGCGCGCGCGTGCTT
CCGCCACGCCCTCGAGGAGGACCCGTCGTCCGTCCCGACGCTCGTCGCGT
GGGCGCTCATGGAGGCGGCGGCGGGCGTCCCCGTGCGCGCGCGCGCGCTC
TTCGAGGTCGCCGTTGGCGCCGCCGCCACCGCCGCCGCCGCCGCGTCCGT
CTGGGCCGCGTACGAGGCGATGGAGCTGCGCGCCGGCAACGCGCGCGAGG
CGCGCGACGTGTACGAGCGCGGCCTGGCGGCGTCCATGGCACGC
back to top