mRNA_15904 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|180141
Unique NamemRNA_15904
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|180141 vs. uniprot
Match: A0A836CH06_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH06_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.370e-48
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 
Query:    1 MVYAGSAARIHQPEPRKAGPHGRGSKDITLPQVERYYNQPLAQAARGLGLSATMLKKVCRSLGVRNWPYRQLASI 225
            MVYAGSAARIHQPEPRKAGPHGRGSKDITLPQVERYYNQPLAQAARGLGLSATMLKKVCRSLGVRNWPYRQLASI
Sbjct:    1 MVYAGSAARIHQPEPRKAGPHGRGSKDITLPQVERYYNQPLAQAARGLGLSATMLKKVCRSLGVRNWPYRQLASI 75
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BLAST of jgi.p|Trimin1|180141 vs. uniprot
Match: A0A835ZE41_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE41_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.030e-17
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   73 SKDITLPQVERYYNQPLAQAARGLGLSATMLKKVCRSLGVRNWPYRQLASI 225
            +  +TL  +ERYY+ PLA+A+R LGLSATMLKKVCRS G++ WP+RQLASI
Sbjct:    2 ASSLTLADLERYYSHPLAEASRELGLSATMLKKVCRSFGIKRWPHRQLASI 52
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BLAST of jgi.p|Trimin1|180141 vs. uniprot
Match: H6WBB7_VAULI (Putative NIN-like transcription factor n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB7_VAULI)

HSP 1 Score: 65.9 bits (159), Expect = 6.810e-11
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:   76 KDITLPQVERYYNQPLAQAARGLGLSATMLKKVCRSLGVRNWPYRQLASI 225
            ++ITL  ++ YYN PLA+ A+ LGLS T+LKK+CR  G++ WP+RQ+ SI
Sbjct:   12 EEITLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSI 61
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BLAST of jgi.p|Trimin1|180141 vs. uniprot
Match: A0A2P6VNE1_9CHLO (ABC(ATP-binding) family transporter: iron compound n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VNE1_9CHLO)

HSP 1 Score: 65.1 bits (157), Expect = 1.500e-10
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:   37 PEPRKAGPHGRGSKDITLPQVERYYNQPLAQAARGLGLSATMLKKVCRSLGVRNWPYRQL 216
            P+ +K    GR S +IT  ++E YY+ P  +A+R LG+  T+LK++CR LG+  WPYRQL
Sbjct:  287 PQKKKRTKGGRYSHEITKEEIELYYHLPCEEASRQLGIGLTILKRICRRLGIDKWPYRQL 346
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BLAST of jgi.p|Trimin1|180141 vs. uniprot
Match: A0A835YTG3_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTG3_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.390e-10
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   82 ITLPQVERYYNQPLAQAARGLGLSATMLKKVCRSLGVRNWPYRQLASI 225
            ITL  ++ YYN PLA+ A+ LGLS T+LKK+CR  G++ WP+RQ+ S+
Sbjct:   11 ITLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSL 58
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BLAST of jgi.p|Trimin1|180141 vs. uniprot
Match: A0A2P6TY61_CHLSO (Kinesin-associated 3 isoform X1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TY61_CHLSO)

HSP 1 Score: 63.9 bits (154), Expect = 3.850e-10
Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   28 IHQPEPRKAGPHGRGSKDITLPQVERYYNQPLAQAARGLGLSATMLKKVCRSLGVRNWPYRQL 216
            + Q + +K    GR S +IT  ++E+YY+ P  +A+R LG+  T+LK++CR LG+  WPYR L
Sbjct:    3 LMQVQKKKRTKGGRYSNEITKEEIEQYYHLPCEEASRHLGIGLTILKRICRRLGIEKWPYRAL 65
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BLAST of jgi.p|Trimin1|180141 vs. uniprot
Match: A0A835Z1M5_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 6.510e-10
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   79 DITLPQVERYYNQPLAQAARGLGLSATMLKKVCRSLGVRNWPYRQLASI 225
            +ITL  ++ +YN PLA+ A+ LGLS T+LKK+CR  G++ WP+RQ+ SI
Sbjct:   13 NITLELLQSFYNVPLAELAKELGLSLTLLKKICRKYGIQRWPHRQIRSI 61
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BLAST of jgi.p|Trimin1|180141 vs. uniprot
Match: K8YW24_NANGC (Rwp-rk domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YW24_NANGC)

HSP 1 Score: 63.2 bits (152), Expect = 7.000e-10
Identity = 24/58 (41.38%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   52 AGPHGRGSKDITLPQVERYYNQPLAQAARGLGLSATMLKKVCRSLGVRNWPYRQLASI 225
            +G   R  K ++L ++ RY+++P+  AAR LG+ +T+LKK+CR   ++ WPYRQ+ S+
Sbjct:  317 SGGSSRSLKSVSLVELRRYFDRPIEDAARALGICSTLLKKICRRYHIKRWPYRQVKSL 374
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BLAST of jgi.p|Trimin1|180141 vs. uniprot
Match: L1JZK9_GUITC (RWP-RK domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JZK9_GUITC)

HSP 1 Score: 59.7 bits (143), Expect = 1.710e-9
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:   64 GRGSKDITLPQVERYYNQPLAQAARGLGLSATMLKKVCRSLGVRNWPYRQ 213
            GR    I LP +E +Y+ P  +AARGLG+S T +K +CR LG+  WPYR+
Sbjct:   29 GRRPLAIDLPMLESFYSMPQIRAARGLGVSLTAMKHICRKLGIDRWPYRR 78
[Close]
BLAST of jgi.p|Trimin1|180141 vs. uniprot
Match: A0A4D9CWV5_9STRA (RWP-RK domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWV5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.810e-9
Identity = 23/58 (39.66%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   52 AGPHGRGSKDITLPQVERYYNQPLAQAARGLGLSATMLKKVCRSLGVRNWPYRQLASI 225
            +G   R  K ++L ++ RY+++P+  AAR +G+ +T+LKK+CR   ++ WPYRQ+ S+
Sbjct:  312 SGGASRSLKSVSLVELRRYFDRPIEDAARAIGICSTLLKKICRRYHIKRWPYRQVKSL 369
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180141 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CH06_9STRA1.370e-48100.00RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A835ZE41_9STRA2.030e-1766.67RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
H6WBB7_VAULI6.810e-1154.00Putative NIN-like transcription factor n=1 Tax=Vau... [more]
A0A2P6VNE1_9CHLO1.500e-1046.67ABC(ATP-binding) family transporter: iron compound... [more]
A0A835YTG3_9STRA3.390e-1054.17Putative NIN-like transcription factor n=1 Tax=Tri... [more]
A0A2P6TY61_CHLSO3.850e-1042.86Kinesin-associated 3 isoform X1 n=1 Tax=Chlorella ... [more]
A0A835Z1M5_9STRA6.510e-1053.06Putative NIN-like transcription factor n=1 Tax=Tri... [more]
K8YW24_NANGC7.000e-1041.38Rwp-rk domain-containing protein n=1 Tax=Nannochlo... [more]
L1JZK9_GUITC1.710e-950.00RWP-RK domain-containing protein n=1 Tax=Guillardi... [more]
A0A4D9CWV5_9STRA1.810e-939.66RWP-RK domain-containing protein n=2 Tax=Monodopsi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_210contigContig_210:32070..32294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|180141|e_gw1.210.23.1
DescriptionRWP-RK domain
COG categoryK
Max annot lvl35493|Streptophyta
EggNOG OGs28K91@1|root,2QSPQ@2759|Eukaryota,37RG9@33090|Viridiplantae,3GV7W@35493|Streptophyta,3M6IK@4447|Liliopsida,3IIVU@38820|Poales
Evalue2e-10
Seed ortholog38727.Pavir.Ab02992.1.p
Hectar predicted targeting categoryother localisation
TranscriptId180463
TrackFilteredModels1
ProteinId180141
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180141gene_15904Tribonema minus UTEX_B_3156 geneContig_210 32070..32294 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15904_1exon_15904_1Tribonema minus UTEX_B_3156 exonContig_210 32070..32294 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15904CDS_15904Tribonema minus UTEX_B_3156 CDSContig_210 32070..32294 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180141Trimin1|180141|e_gw1.210.23.1Tribonema minus UTEX_B_3156 polypeptideContig_210 32070..32294 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15904 ID=mRNA_15904|Name=jgi.p|Trimin1|180141|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=225bp|location=Sequence derived from alignment at Contig_210:32070..32294+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTACGCTGGCAGCGCGGCCCGCATCCACCAGCCTGAGCCAAGAAA
GGCTGGTCCTCACGGCAGAGGGTCAAAGGATATAACTCTGCCGCAAGTAG
AGCGGTACTACAATCAGCCCTTGGCTCAGGCAGCACGAGGGCTTGGGCTC
AGTGCGACCATGCTCAAGAAAGTGTGTCGCAGCCTGGGCGTTCGCAACTG
GCCATACCGCCAGCTGGCCAGCATT
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protein sequence of jgi.p|Trimin1|180141

>Trimin1|180141|e_gw1.210.23.1 ID=Trimin1|180141|e_gw1.210.23.1|Name=jgi.p|Trimin1|180141|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=75bp
MVYAGSAARIHQPEPRKAGPHGRGSKDITLPQVERYYNQPLAQAARGLGL
SATMLKKVCRSLGVRNWPYRQLASI
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mRNA from alignment at Contig_210:32070..32294+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15904 ID=mRNA_15904|Name=jgi.p|Trimin1|180141|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=225bp|location=Sequence derived from alignment at Contig_210:32070..32294+ (Tribonema minus UTEX_B_3156 )
ATGGTGTACGCTGGCAGCGCGGCCCGCATCCACCAGCCTGAGCCAAGAAA
GGCTGGTCCTCACGGCAGAGGGTCAAAGGATATAACTCTGCCGCAAGTAG
AGCGGTACTACAATCAGCCCTTGGCTCAGGCAGCACGAGGGCTTGGGCTC
AGTGCGACCATGCTCAAGAAAGTGTGTCGCAGCCTGGGCGTTCGCAACTG
GCCATACCGCCAGCTGGCCAGCATT
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Coding sequence (CDS) from alignment at Contig_210:32070..32294+

>mRNA_15904 ID=mRNA_15904|Name=jgi.p|Trimin1|180141|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=225bp|location=Sequence derived from alignment at Contig_210:32070..32294+ (Tribonema minus UTEX_B_3156 )
ATGGTGTACGCTGGCAGCGCGGCCCGCATCCACCAGCCTGAGCCAAGAAA
GGCTGGTCCTCACGGCAGAGGGTCAAAGGATATAACTCTGCCGCAAGTAG
AGCGGTACTACAATCAGCCCTTGGCTCAGGCAGCACGAGGGCTTGGGCTC
AGTGCGACCATGCTCAAGAAAGTGTGTCGCAGCCTGGGCGTTCGCAACTG
GCCATACCGCCAGCTGGCCAGCATT
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