mRNA_15885 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|353620 vs. uniprot
Match: A0A835Z6R4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6R4_9STRA) HSP 1 Score: 593 bits (1529), Expect = 5.340e-210 Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 1
Query: 1 MKLSPRLETADASARRAGMSTATAAVIRHVPMAKAFSPRTIYMVRESLASTTAKGATEYHAAVVEAQLQETPVMQGALTGAGGGDSGGRASYTVTMECPVEELFEGDSKGFEGAIHLHDATGQLYMLALCEGNHCAQKQKGREKGNGVLVVTKKVVKDDGTCSWQTIRHMKVPSSAMFQDYSGINIQQGTGRVLISSXXXXXXXXXXXXXXXXXXXXXESQLWVGRMSLCSDGRFDPMKSELEGGVVFDFPRNDACEIIYCNLEASFVGVTWVTDHLIVAVSDRMKGGGAQPSRCQAKDQSIHVFALPESWEKSLQATLP 960
MKLSPRLETADASARRAGMSTATAAVIRHVPMAKAFSPRTIYMVRESLASTTAKGATEYHAAVVEAQLQETPVMQGALTGAGGGDSGGRASYTVTMECPVEELFEGDSKGFEGAIHLHDATGQLYMLALCEGNHCAQKQKGREKGNGVLVVTKKVVKDDGTCSWQTIRHMKVPSSAMFQDYSGINIQQGTGRVLISSXXXXXXXXXXXXXXXXXXXXXESQLWVGRMSLCSDGRFDPMKSELEGGVVFDFPRNDACEIIYCNLEASFVGVTWVTDHLIVAVSDRMKGGGAQPSRCQAKDQSIHVFALPESWEKSLQATLP
Sbjct: 1 MKLSPRLETADASARRAGMSTATAAVIRHVPMAKAFSPRTIYMVRESLASTTAKGATEYHAAVVEAQLQETPVMQGALTGAGGGDSGGRASYTVTMECPVEELFEGDSKGFEGAIHLHDATGQLYMLALCEGNHCAQKQKGREKGNGVLVVTKKVVKDDGTCSWQTIRHMKVPSSAMFQDYSGINIQQGTGRVLISSXXXXXXXXXXXXXXXXXXXXXESQLWVGRMSLCSDGRFDPMKSELEGGVVFDFPRNDACEIIYCNLEASFVGVTWVTDHLIVAVSDRMKGGGAQPSRCQAKDQSIHVFALPESWEKSLQATLP 320
BLAST of jgi.p|Trimin1|353620 vs. uniprot
Match: A0A812YL60_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YL60_SYMMI) HSP 1 Score: 200 bits (508), Expect = 1.180e-56 Identity = 102/226 (45.13%), Postives = 139/226 (61.50%), Query Frame = 1
Query: 274 YTVTMECPVEELFEGDSKGFEGAIHLHDATGQLYMLALCEGNHCAQKQKGREKGNGVLVVTKKVVKDDGT---------CSWQTIRHMKVPSSAMFQDYSGINIQQGTGRVLISSXXXXXXXXXXXXXXXXXXXXXESQLWVGRMSLCSDGRFDPMKSELEGGVVFDFPRNDACEIIYCNLEASFVGVTWVTDHLIVAVSDRMKGGGAQPSRCQAKDQSIHVFALP 924
Y V CP E F G SKGFEGA+ L DA G+LYML LCEGN C + ++GR KG+G +V+ + V DGT C W+TIR++K+P++A FQDYS I I + GRV ++S ES++W+G+++ +G FDP+KSE V +FPR+ CE++YCN+E G+ WV+D L+V VSD+MK G QP RC KDQSIH+F +P
Sbjct: 86 YEVLRSCPSEMEFSGSSKGFEGAVGLKDAKGELYMLGLCEGNFCDEGKRGRVKGHGEVVLMQFV---DGTKDNVGAHHGCMWKTIRYLKIPATAHFQDYSAITINRN-GRVAVASQE-------------------ESKVWLGQLTHVDNGVFDPVKSEFVDEKVLNFPRDSNCEVVYCNIE----GIHWVSDELLVGVSDKMKSNGKQPFRCLEKDQSIHMFVMP 284
BLAST of jgi.p|Trimin1|353620 vs. uniprot
Match: A0A7S4C0T9_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C0T9_CHRCT) HSP 1 Score: 195 bits (496), Expect = 4.400e-53 Identity = 99/227 (43.61%), Postives = 138/227 (60.79%), Query Frame = 1
Query: 265 RASYTVTMECPVEELFEGDSKGFEGAIHLHDATGQLYMLALCEGNHCAQKQKGREKGNG-VLVVTKKVVKDDGTCSWQTIRHMKVPSSAMFQDYSGINIQQGTGRVLISSXXXXXXXXXXXXXXXXXXXXXESQLWVGRMSLCSDGRFDPMKSELEGGVVFDFPRNDACEIIYCNLEASFVGVTWVTD------HLIVAVSDRMKGGGAQPSRCQAKDQSIHVFALP 924
R +YTV CP E FEG SKGFEGAI L G+LY+L LCEGNHC +++KG++ GNG V+V+T+K ++ C W T+ +++PSSA F DYS I + T V I+S SQ+W+G++ ++G FDP K++L G V+DFPRN C++ YCN+E GV W++D ++ AVSD+MK G Q C+ KDQSIH+FA+P
Sbjct: 240 RLNYTVIETCPSEMTFEGTSKGFEGAISLRGKDGRLYILGLCEGNHCKEEEKGKDAGNGRVVVMTRKQATNEFGCVWATVATLEIPSSANFVDYSAITLHSVTQAVAITSQE-------------------NSQVWIGKLEGGANGLFDPEKAKLTGDSVYDFPRNVNCDLQYCNIE----GVEWISDGGEGTPQVLAAVSDKMKSKGKQKFTCKEKDQSIHLFAIP 443
BLAST of jgi.p|Trimin1|353620 vs. uniprot
Match: A0A7S4DAL8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAL8_HETAK) HSP 1 Score: 194 bits (492), Expect = 4.900e-53 Identity = 109/278 (39.21%), Postives = 153/278 (55.04%), Query Frame = 1
Query: 121 IYMVRESLASTTAKGAT----------EYHAAVVEAQLQETPVMQGALTGAGGGDSGGRASYTVTMECPVEELFEGDSKGFEGAIHLHDATGQLYMLALCEGNHCAQKQKGREKGNGVLVVTKKVVKDDGTCSWQTIRHMKVPSSAMFQDYSGINIQQGTGRVLISSXXXXXXXXXXXXXXXXXXXXXESQLWVGRMSLCSDGRFDPMKSELEGGVVFDFPRNDACEIIYCNLEASFVGVTWVTDHLIVAVSDRMKGGGAQPSRCQAKDQSIHVFALP 924
+Y+VRES+ ++ ++ EYHA V + L T G Y+V CP FEGDSKG EGA + G Y+L LCEGN+CA+ KG+++GNG ++V KK +G CSW T+R M++P SA FQDYS I+I +GR+ I+S ESQ+W+G + FDP+ +E G V++FPR+D CE++YCN+E G+ W+ D+++VA SD+MK +Q RC KDQSIHVF LP
Sbjct: 158 LYVVRESIDTSGGTDSSDSGDSDSADREYHAVVEKVFLNATDPNVG---------------YSVQESCPTVYQFEGDSKGLEGATMVRGVDGAEYILGLCEGNYCAEGDKGKDRGNGRVIVLKKT---EGACSWDTVRLMEIPKSADFQDYSAISISW-SGRIAITSQE-------------------ESQVWIGEFTSFDSLLFDPVNTEFGEGKVYNFPRDDNCEVVYCNIE----GIHWINDNMLVAASDKMKKS-SQDWRCFDKDQSIHVFVLP 392
BLAST of jgi.p|Trimin1|353620 vs. uniprot
Match: B7FPJ1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPJ1_PHATC) HSP 1 Score: 192 bits (489), Expect = 2.510e-52 Identity = 111/275 (40.36%), Postives = 150/275 (54.55%), Query Frame = 1
Query: 124 YMVRESLASTTAKGATEYHAAVVEAQLQETPVMQGALTGAGGGDSGGRASYTVTMECPVEELFEGDSKGFEGAIHLHDATGQLYMLALCEGNHCAQKQKGREKGNGVLVVTKKVVKDDGTCSWQTIRHMKVPSSAMFQDYSGINIQQGTGRVLISSXXXXXXXXXXXXXXXXXXXXXESQLWVGRMSLCSDG--------RFDPMKSELEGGVVFDFPRNDACEIIYCNLEASFVGVTWVTDHLIVAVSDRMKGGGAQPSRCQAKDQSIHVFALP 924
Y+VRES+ ST YHA + E L G +Y V +CP E FEGDSKGFEGAI +HD G L +L LCEGN+C++ +K +KG+G++V +K V DDG+C W+T+ + +P +A F DYS + + + G+V ISS ESQLWVG++ +D FDP + +FDFP+ND C +YCN+E GV W+ D +I+AVSD+MK G Q RC KDQS+HVF LP
Sbjct: 196 YVVRESIQSTD----KTYHAIIEELSL-------------------GEEAYEVVEQCPAEFEFEGDSKGFEGAIAVHDLNGTLTVLGLCEGNYCSESKKD-DKGHGMVVAMQKGVSDDGSCEWKTVTTISIPKTAFFADYSAMTMDK-KGKVAISSQE-------------------ESQLWVGKLLGQNDAGLWDILNIAFDPDHKDK----LFDFPKNDQCATVYCNIE----GVHWIGDDMILAVSDKMKSKGKQDFRCFDKDQSVHVFVLP 418
BLAST of jgi.p|Trimin1|353620 vs. uniprot
Match: A0A7S0L7J8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L7J8_9EUKA) HSP 1 Score: 184 bits (467), Expect = 2.290e-49 Identity = 99/228 (43.42%), Postives = 132/228 (57.89%), Query Frame = 1
Query: 268 ASYTVTMECPVEELFEGDSKGFEGAIHLHDATGQLYMLALCEGNHCAQKQKGREKGNGVLVVTKKVVKDDGTCSWQTIRHMKVPSSAMFQDYSGINIQQGTGRVLISSXXXXXXXXXXXXXXXXXXXXXESQLWVGRMSLCSDGRFDPMKSELEGGVVFDFPRNDA-CEIIYCNLEASFVGVTWVTDH--------LIVAVSDRMKGGGAQPSRCQAKDQSIHVFALP 924
+SYTV C E FEGDSKGFEG L G LY+L LCEGNHC++K G++ G+G +VV + DG C W+T+R + +PSS F DYS I I T V ++S SQLWVG+++ +DG FDP+ +E G V+DFPR+D+ CE YCN+E G+ W++ +VAVSD+MK G QP+ C KDQSIH+F+LP
Sbjct: 195 SSYTVVETCLSEMTFEGDSKGFEGGTSLRGKDGVLYVLGLCEGNHCSEKN-GKDVGHGKVVVMAREETPDG-CRWKTVRQLNLPSSVRFVDYSAIAIHHSTQSVAVTSQE-------------------NSQLWVGQLAGGADGAFDPLAAEFSEGKVYDFPRSDSSCEATYCNIE----GIHWISGSGEGGTMPSTLVAVSDKMKSKGRQPAICHDKDQSIHLFSLP 397
BLAST of jgi.p|Trimin1|353620 vs. uniprot
Match: A0A8J2STX4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2STX4_9STRA) HSP 1 Score: 174 bits (440), Expect = 8.940e-45 Identity = 97/230 (42.17%), Postives = 125/230 (54.35%), Query Frame = 1
Query: 274 YTVTMECPVEELFEGDSKGFEGAIHLHDATGQLYMLALCEGNHCAQKQKGREKGNGVLVVTKKVVKDD-----GTCSWQTIRHMKVPSSAMFQDYSGINIQQGTGRVLISSXXXXXXXXXXXXXXXXXXXXXESQLWVGRMSLCSDGRFDPMKSELEGGVVFDFPRNDACEIIYCNLEASFVGVTWVTD--------HLIVAVSDRMKGGGAQPSRCQAKDQSIHVFALP 924
Y V CP E LF+GDSKGFEGA + A G LY+L LCEGNHC+ Q G++ G+G ++V + ++D G C W+T+R + +P F DYS + I T V I+S SQ+WVG +S SDG FDPM +E G V+DFPR C + YCN+E G+ WV D +V VSD+MKG G QP C KDQS H+F LP
Sbjct: 274 YAVLDSCPSEMLFDGDSKGFEGARSIRGADGVLYVLGLCEGNHCSS-QTGKDVGHGKVIV---MAREDEGGPTGGCYWKTVRTIDLPMKE-FVDYSALAIHHRTKAVAITSQE-------------------NSQVWVGELSTGSDGEFDPMTAEFSKGKVYDFPRAATCAVQYCNIE----GIEWVDDGGADEDAPRTLVGVSDKMKGKGKQPFTCLEKDQSFHLFQLP 475
BLAST of jgi.p|Trimin1|353620 vs. uniprot
Match: A0A7S1XJ02_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJ02_9STRA) HSP 1 Score: 169 bits (427), Expect = 7.040e-44 Identity = 93/221 (42.08%), Postives = 126/221 (57.01%), Query Frame = 1
Query: 274 YTVTMECPVEELFEGDSKGFEGAIHLHDATGQLYMLALCEGNHCAQKQKGREKGNGVLVVTKKVVKDDGTCSWQTIRHMKVPSSAMFQDYSGINIQQGTGRVLISSXXXXXXXXXXXXXXXXXXXXXESQLWVGRMSLCSDGRF--DPMKSELEGGVVFDFPRN-DACEIIYCNLEASFVGVTWV-TDHLIVAVSDRMKGGGAQPSRCQAKDQSIHVFALP 924
Y + C V+ FEGDSKGFEGAI L D G+L+ + LCEGN CA+ G++KG+G +V+ K DG C W T + + +P SA FQDYS I ++ G V ISS +Q+WVG+ L DG F D + + + G V+DFPR+ D C + YCN+E G+ + D L++AVSD+MK G Q +C KDQS HVF+LP
Sbjct: 176 YEIEDACRVDFEFEGDSKGFEGAIGLKDKDGKLFFIGLCEGNGCAEGDAGKDKGHGKIVIASKGTDGDGKCLWTTEKTLPIPRSAYFQDYSAIAMR-ADGTVAISSQE-------------------NAQVWVGKFKLADDGFFALDVAEFDDDVGEVYDFPRSVDGCSVEYCNVE----GIHFTDNDRLLLAVSDKMKSRGKQNYKCLGKDQSAHVFSLP 372
BLAST of jgi.p|Trimin1|353620 vs. uniprot
Match: A0A7S2Q461_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q461_9STRA) HSP 1 Score: 169 bits (429), Expect = 1.020e-43 Identity = 99/253 (39.13%), Postives = 134/253 (52.96%), Query Frame = 1
Query: 172 EYHAAVVEAQLQETPVMQGALTGAGGGDSGGRASYTVTMECPVEELFEGDSKGFEGAIHLHDATGQLYMLALCEGNHCAQKQKGREKGNGVLVVTKKVVKDDGT-CSWQTIRHMKVPSSAMFQDYSGINIQQGTGRVLISSXXXXXXXXXXXXXXXXXXXXXESQLWVGRMSLCSDGRFDPMKSELE-GGVVFDFPRNDACEIIYCNLEASFVGVTWVTDHLIVAVSDRMKGGGAQPSRCQAKDQSIHVFALP 924
EYHA + E +L E YTV EC E FEGDSKGFEGA+ D G LY++ LCEGNHC++ +K + GNG +V+ KK + T C W+T+R + +PSSA F DYS I+I Q GRV I+S S +W+G+ +G DP+ + E V FP++ C IYCN+E G+ ++ D +++AVSD+MK G Q RC KDQSIH F +P
Sbjct: 210 EYHAIIEELELSEN-------------------DYTVVNECRCEFEFEGDSKGFEGAVGFPDEDGVLYIVGLCEGNHCSESRKN-DVGNGRVVLMKKSEDPEMTQCVWETVRVVNIPSSAAFLDYSAIDITQD-GRVAITSQE-------------------HSAVWLGQAKGIDNGIIDPIGFDFEVKSKVLQFPKDGGCHTIYCNIE----GIHFMNDDMLMAVSDKMKSKGRQDFRCHDKDQSIHAFVIP 418
BLAST of jgi.p|Trimin1|353620 vs. uniprot
Match: A0A7S3L566_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L566_9STRA) HSP 1 Score: 165 bits (417), Expect = 5.780e-43 Identity = 100/272 (36.76%), Postives = 143/272 (52.57%), Query Frame = 1
Query: 118 TIYMVRESLASTTAKGATEYHAAVVEAQLQETPVMQGALTGAGGGDSGGRASYTVTMECPVEELFEGDSKGFEGAIHLHDATGQLYMLALCEGNHCAQKQKGREKGNGVLVVTKKVVKDDGTCSWQTIRHMKVPSSAMFQDYSGINIQQGTGRVLISSXXXXXXXXXXXXXXXXXXXXXESQLWVGRMSLCSDGRFDPMKSEL---EGGVVFDFPRNDACEIIYCNLEASFVGVTWVTDHLIVAVSDRMKGGGAQPSRCQAKDQSIHVFALP 924
T Y+VRES+ + YHA + E L + +T+ +C E FEGDSKGFEG +HD G+ Y+LALCEGN C +K+ +GNG +VV K + + D +C W T++ ++VP A F DYS + I++ G V I+S +S LW+GR+ + SEL + G +F FP+N+ CE IYCN+E G+ W+ D ++AVSD+ G G + RC +KDQS+HVFALP
Sbjct: 95 TYYIVRESVLHDELQS---YHAIIEEIDLHRHRDVS--------------EQFTINRKCRTEFQFEGDSKGFEGVWAIHDIEGEFYLLALCEGNRCREKEH-TSRGNGRIVVMK-LNETDTSCVWNTVKILEVPHDAYFADYSAMAIRED-GYVAITSQE-------------------DSMLWIGRLFGKNPETGHWNVSELAFDQVGEMFSFPKNENCETIYCNIE----GIHWLDDGTLIAVSDKTHGEGDEDFRCYSKDQSVHVFALP 323 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353620 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15885 ID=mRNA_15885|Name=jgi.p|Trimin1|353620|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1579bp|location=Sequence derived from alignment at Contig_173:169652..176361+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAAGCTCTCGCCGAGGCTTGAGACAGCCGACGCCAGCGCACGACGCGCback to top protein sequence of jgi.p|Trimin1|353620 >Trimin1|353620|estExt_Genemark1.C_Ctg_1730022 ID=Trimin1|353620|estExt_Genemark1.C_Ctg_1730022|Name=jgi.p|Trimin1|353620|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=321bp MKLSPRLETADASARRAGMSTATAAVIRHVPMAKAFSPRTIYMVRESLASback to top mRNA from alignment at Contig_173:169652..176361+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15885 ID=mRNA_15885|Name=jgi.p|Trimin1|353620|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6710bp|location=Sequence derived from alignment at Contig_173:169652..176361+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_173:169652..176361+ >mRNA_15885 ID=mRNA_15885|Name=jgi.p|Trimin1|353620|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=963bp|location=Sequence derived from alignment at Contig_173:169652..176361+ (Tribonema minus UTEX_B_3156 )back to top |