mRNA_15872 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|144771
Unique NamemRNA_15872
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|144771 vs. uniprot
Match: A0A835ZCH9_9STRA (Protein phosphatase 4 core regulatory subunit R2 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH9_9STRA)

HSP 1 Score: 221 bits (563), Expect = 4.320e-73
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1
Query:    1 IPAELERVLEEMAKEGVPYYTWAGLRELLEAKLVAVIDGFNASFGYEEDKGGRPFTQRKTDLVEALRSFDGAPFTLQRLAEVLLEPERQYQATHKLLNSLDKVLSVSSTLP 333
            IPAELERVLEEMAKEGVPYYTWAGLRELLEAKLVAVIDGFNASFGYEEDKGGRPFTQRKTDLVEALRSFDGAPFTLQRLAEVLLEPERQYQATHKLLNSLDKVLSVSSTLP
Sbjct:    1 IPAELERVLEEMAKEGVPYYTWAGLRELLEAKLVAVIDGFNASFGYEEDKGGRPFTQRKTDLVEALRSFDGAPFTLQRLAEVLLEPERQYQATHKLLNSLDKVLSVSSTLP 111          
BLAST of jgi.p|Trimin1|144771 vs. uniprot
Match: D8LGN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGN8_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 2.160e-34
Identity = 62/111 (55.86%), Postives = 78/111 (70.27%), Query Frame = 1
Query:    1 IPAELERVLEEMAKEGVPYYTWAGLRELLEAKLVAVIDGFNASFGYEEDKGGRPFTQRKTDLVEALRSFDGAPFTLQRLAEVLLEPERQYQATHKLLNSLDKVLSVSSTLP 333
            IP ELE VL E+A  GVPYY W GL+ELL A++   +       G+    GG+ + QR+ +LV +LR FD APFTLQRLAEVL +P RQY  THKL+N L+++LSVSSTLP
Sbjct:   72 IPPELEGVLREIAAVGVPYYGWGGLKELLAARMSQAVGALRKDSGFFRAAGGKDYPQRRDELVASLRRFDAAPFTLQRLAEVLQDPRRQYSTTHKLINGLERLLSVSSTLP 182          
BLAST of jgi.p|Trimin1|144771 vs. uniprot
Match: A0A8K1C4J3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4J3_PYTOL)

HSP 1 Score: 97.8 bits (242), Expect = 3.450e-23
Identity = 53/118 (44.92%), Postives = 72/118 (61.02%), Query Frame = 1
Query:   13 LERVLEEMAKEGVPYYTWAGLRELLEAKLVAVIDGFNASFGYEEDKGG-----------RPFTQRKTDLVEALRSFDGAPFTLQRLAEVLLEPERQYQATHKLLNSLDKVLSVSSTLP 333
            L RVLEE+ + GVPYY W  LR LL A+L   +D   A+     DK G             + +R+  + E L +FDG PFTLQRL EV+LEP + Y+  +KL N+L+K+LSV+ST+P
Sbjct:   30 LTRVLEEIRQTGVPYYQWPHLRALLVARLKVALDETQAA-----DKSGAVTVGWSPTNKEKYEERRQQVAEQLTAFDGPPFTLQRLTEVILEPHKSYKNLNKLFNALEKLLSVTSTIP 142          
BLAST of jgi.p|Trimin1|144771 vs. uniprot
Match: K3XAA0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAA0_GLOUD)

HSP 1 Score: 95.9 bits (237), Expect = 1.810e-22
Identity = 52/117 (44.44%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    1 IPAELERVLEEMAKEGVPYYTWAGLRELLEAKLVAVIDGFNASFGYEEDKG-------GRPFTQRKTDLVEALRSFDGAPFTLQRLAEVLLEPERQYQATHKLLNSLDKVLSVSSTL 330
            I   LERVLEE+   GVPYY WA L+ LL AKL A +D   A+       G           ++R+  + E L +FDG PFTLQRL EV++EP + Y+  +KL+N+L+K+L+VS+T+
Sbjct:   29 ISPALERVLEEIRATGVPYYQWAHLKPLLVAKLQAAMDQVAAADTNAPTVGVGWSPTNKNSASERRATITELLNTFDGPPFTLQRLTEVIMEPLKSYKTLNKLINALEKLLAVSTTI 145          
BLAST of jgi.p|Trimin1|144771 vs. uniprot
Match: A0A662WPY0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WPY0_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 4.730e-22
Identity = 49/114 (42.98%), Postives = 71/114 (62.28%), Query Frame = 1
Query:   13 LERVLEEMAKEGVPYYTWAGLRELLEAKLVAVIDGFNAS--------FGYEEDKGGRPFTQRKTDLVEALRSFDGAPFTLQRLAEVLLEPERQYQATHKLLNSLDKVLSVSSTL 330
            LERVL EM + GVP Y W  L+ LL AKL   +D  +A          G+        F +R  ++   L +F+G PFTLQRL E+++EPE+ Y++ HKL+N+L+K+L+VSST+
Sbjct:   40 LERVLLEMRQTGVPCYAWEHLKVLLLAKLKLALDQVHAGDKQTPTPGVGWSPTNRNNRFDERCANVTGLLNTFEGPPFTLQRLTEIIMEPEKSYKSLHKLINALEKLLAVSSTI 153          
BLAST of jgi.p|Trimin1|144771 vs. uniprot
Match: A0A3R7IKB3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7IKB3_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 5.030e-22
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    1 IPAELERVLEEMAKEGVPYYTWAGLRELLEAKLVAVIDGFNASFGYEEDKGGRPFTQRKTDLVEALRSFDGAPFTLQRLAEVLLEPERQYQATHKLLNSLDKVLSVSSTL 330
            I   LERVL EM + GVP Y WA L+ LL AKL   +D  +   G +          R+  + + L++F+G PFTLQRL E++LEP R Y++  KLLN+L+K+L+VSST+
Sbjct:   23 ISPALERVLLEMRQTGVPCYAWAHLKVLLLAKLQLALDQMDGDAGSKS---------RRASVTQLLQTFEGPPFTLQRLTEIILEPHRSYRSLPKLLNALEKLLAVSSTI 123          
BLAST of jgi.p|Trimin1|144771 vs. uniprot
Match: H3GKP3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GKP3_PHYRM)

HSP 1 Score: 91.3 bits (225), Expect = 3.810e-21
Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    1 IPAELERVLEEMAKEGVPYYTWAGLRELLEAKLVAVIDGFNASFGYEEDKGGRPFTQ--RKTDLVEALRSFDGAPFTLQRLAEVLLEPERQYQATHKLLNSLDKVLSVSSTL 330
            I   LERVL EM + GVP Y WA L+ LL AKL   +D  ++           P T   R+  + + L++F+  PFTLQRL E++LEPER Y++  KLLN+L+K+L+VSST+
Sbjct:   28 ISPTLERVLLEMRQTGVPCYAWAHLKVLLLAKLQLALDQMDS-----------PSTSKSRRASVTQLLQTFESPPFTLQRLTEIILEPERSYRSLPKLLNALEKLLAVSSTI 128          
BLAST of jgi.p|Trimin1|144771 vs. uniprot
Match: A0A6S8BB95_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8BB95_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.020e-20
Identity = 50/108 (46.30%), Postives = 66/108 (61.11%), Query Frame = 1
Query:   13 LERVLEEMAKEGVPYYTWAGLRELLEAKLVAVIDGF--NASFGYEEDKGGRPFTQRKTDLVEALRSFDGAPFTLQRLAEVLLEPERQYQATHKLLNSLDKVLSVSSTL 330
            L  +LE M K GVP Y W+ L+ L+   L   ++ F  N      EDK G  F  ++  LV +L  FDGAPFTLQRL E++L PE  Y +T KLL  L+K++SVS+TL
Sbjct:   24 LRSILETMRKYGVPQYEWSELKPLVSQALTQSVNEFRKNHQNTDPEDKPGHSFEDQRDRLVSSLNVFDGAPFTLQRLCELILFPEEHYNSTKKLLFGLEKLVSVSTTL 131          
BLAST of jgi.p|Trimin1|144771 vs. uniprot
Match: A0A5D6XGH8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XGH8_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.390e-20
Identity = 50/114 (43.86%), Postives = 72/114 (63.16%), Query Frame = 1
Query:   13 LERVLEEMAKEGVPYYTWAGLRELLEAKLVAVIDGFNAS--------FGYEEDKGGRPFTQRKTDLVEALRSFDGAPFTLQRLAEVLLEPERQYQATHKLLNSLDKVLSVSSTL 330
            LERVLEE+   GVP Y W  LR LL A+L   +D   A+         G+      R   +R+ ++ E L SF+G PFTLQRL EVL+EP++ Y+  +KL+N+L+K+L+VS+T+
Sbjct:   29 LERVLEEVRITGVPRYAWPQLRALLVAQLQRAMDQVAATDATAATAFVGWSPTNKNRA-NERRNNITELLTSFEGPPFTLQRLTEVLVEPKKSYKTLNKLINALEKLLAVSTTI 141          
BLAST of jgi.p|Trimin1|144771 vs. uniprot
Match: A0A6A3T3U4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3T3U4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.030e-20
Identity = 48/110 (43.64%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    1 IPAELERVLEEMAKEGVPYYTWAGLRELLEAKLVAVIDGFNASFGYEEDKGGRPFTQRKTDLVEALRSFDGAPFTLQRLAEVLLEPERQYQATHKLLNSLDKVLSVSSTL 330
            I   LE+VL EM + GVP Y WA L+ LL AKL   +D  +A    +          R+  + + L++F+  PFTLQRL E++LEP+R Y+   KLLN+L+K+L+VSST+
Sbjct:   28 ISPALEQVLLEMRQTGVPCYAWAHLKVLLLAKLQLALDEMDADAASKS---------RRASVTQLLQTFESPPFTLQRLTEIILEPQRSYRILPKLLNALEKLLAVSSTI 128          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144771 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCH9_9STRA4.320e-73100.00Protein phosphatase 4 core regulatory subunit R2 (... [more]
D8LGN8_ECTSI2.160e-3455.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1C4J3_PYTOL3.450e-2344.92Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3XAA0_GLOUD1.810e-2244.44Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662WPY0_9STRA4.730e-2242.98Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A3R7IKB3_9STRA5.030e-2245.45Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
H3GKP3_PHYRM3.810e-2145.54Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6S8BB95_9STRA1.020e-2046.30Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A5D6XGH8_9STRA1.390e-2043.86Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6A3T3U4_9STRA3.030e-2043.64Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_173contigContig_173:73320..74872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|144771|gw1.173.64.1
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03016,ko03019,ko03400
KEGG rclassRC02795
KEGG ReactionR00437,R00438,R00439,R00440
KEGG ModuleM00394
KEGG Pathwayko00230,ko00240,ko03018,map00230,map00240,map03018
KEGG koko:K00962,ko:K15425
EC2.7.7.8
GOsGO:0000018,GO:0000278,GO:0000775,GO:0002244,GO:0002376,GO:0002520,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006282,GO:0006464,GO:0006807,GO:0007049,GO:0007275,GO:0008150,GO:0008152,GO:0008287,GO:0008589,GO:0009966,GO:0009968,GO:0009987,GO:0010569,GO:0010646,GO:0010648,GO:0010921,GO:0015630,GO:0019208,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0023051,GO:0023057,GO:0030097,GO:0030154,GO:0030234,GO:0030289,GO:0030674,GO:0031323,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0035303,GO:0035304,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043666,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0045879,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051171,GO:0051174,GO:0051246,GO:0051336,GO:0060090,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0098687,GO:0098772,GO:1901564,GO:1902494,GO:1903293,GO:2000779,GO:2001020
Preferred namePPP4R2
Descriptionprotein phosphatase regulator activity
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3175@1|root,KOG3175@2759|Eukaryota
Evalue3.54e-35
Seed ortholog2880.D8LGN8
Hectar predicted targeting categoryother localisation
TranscriptId145093
TrackFilteredModels1
ProteinId144771
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144771gene_15872Tribonema minus UTEX_B_3156 geneContig_173 73320..74872 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144771Trimin1|144771|gw1.173.64.1Tribonema minus UTEX_B_3156 polypeptideContig_173 73320..74872 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15872_2exon_15872_2Tribonema minus UTEX_B_3156 exonContig_173 73320..73385 -
exon_15872_1exon_15872_1Tribonema minus UTEX_B_3156 exonContig_173 74606..74872 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15872CDS_15872Tribonema minus UTEX_B_3156 CDSContig_173 74606..74872 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15872 ID=mRNA_15872|Name=jgi.p|Trimin1|144771|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=333bp|location=Sequence derived from alignment at Contig_173:73320..74872- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATACCTGCGGAGCTGGAGCGGGTCCTCGAGGAGATGGCGAAGGAAGGCGT
GCCCTACTACACGTGGGCCGGCTTGAGAGAGCTGCTCGAGGCTAAGCTGG
TGGCCGTCATCGATGGTTTCAACGCCAGTTTCGGCTACGAGGAAGACAAG
GGTGGGCGGCCGTTTACGCAGCGGAAAACGGACCTGGTGGAGGCTTTGAG
GAGCTTCGATGGGGCGCCGTTTACTCTGCAGAGGTTGGCAGAGGTGCTCC
TGGAGCCGGAGCGGCAGTACCAGGCGACGCACAAGCTGCTCAACAGCCTC
GACAAGGTGCTGTCCGTGAGCAGCACGCTGCCG
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protein sequence of jgi.p|Trimin1|144771

>Trimin1|144771|gw1.173.64.1 ID=Trimin1|144771|gw1.173.64.1|Name=jgi.p|Trimin1|144771|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=111bp
IPAELERVLEEMAKEGVPYYTWAGLRELLEAKLVAVIDGFNASFGYEEDK
GGRPFTQRKTDLVEALRSFDGAPFTLQRLAEVLLEPERQYQATHKLLNSL
DKVLSVSSTLP
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mRNA from alignment at Contig_173:73320..74872-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15872 ID=mRNA_15872|Name=jgi.p|Trimin1|144771|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1553bp|location=Sequence derived from alignment at Contig_173:73320..74872- (Tribonema minus UTEX_B_3156 )
ATACCTGCGGAGCTGGAGCGGGTCCTCGAGGAGATGGCGAAGGAAGGCGT GCCCTACTACACGTGGGCCGGCTTGAGAGAGCTGCTCGAGGCTAAGCTGG TGGCCGTCATCGATGGTTTCAACGCCAGTTTCGGCTACGAGGAAGACAAG GGTGGGCGGCCGTTTACGCAGCGGAAAACGGACCTGGTGGAGGCTTTGAG GAGCTTCGATGGGGCGCCGTTTACTCTGCAGAGGTTGGCAGAGGTGCTCC TGGAGCCGGAGCGGCAGGTGTGCACAGTATTTATGAGAGCTTTTCAACCT TACCACTTAAGCACTGCGTACAGGAATGGCTGGTGTCTTTCCCATAGGAA TGATTTGATTGGTTGACAGCGGTCGACTTGCCATTCCGCTCGGGATGTGA CGTTGACAGTAACCCAGCATGAACACCAGCAACTCATTCGTGACTGTCCC AGGCCAATGACAAAGGGTTGTAGCAGGTAGTCTGCATCAAACGGCTATGA TGTGAGCAAGCTATATCACCACGTCGTCCCGGAACGGAAGTCACAAGGTG AACAGTGACGCCATCGCGCGTGTACTGCATGCTTCAGAGGAATTTGTGCA GCAGCATGACAAGTCCATGTCATCGCAGTCCATTCATGATGTGCAATCTT GCATGTCCGTGCAATGCTTGCACGACTCGGCCATTAATATTGTGTTGTTG AAGTTAAATTAAACATTGGGTACAAGCCATCAGTTCAAGCCCTGGAGAGT CTGCAGACATGCTCTGCAGCTCCCATGTTGCCAATACAATGGGCTGTCTG ATGGTGGTTTAGGCAGCGATCACCACATACCGGTACCAGCCATTGTGTTG CGTGCATCTTGTTACGCCCGCTGCAAGCAGCAGACAAAGGGTCATATCAT ATCATCGTTCGTGTGTCACACGTTCCTATGTCCTATCAGGCCATGAATCA CCTGCTCAGCATTCGGATGTGGCCGCACCTTCGTGCATGCGCTCCCTCCA CTATGATCACACATTATTTCTGAGATGATCGCCCCGGCACAGTGCAATTC CACGCTGTGTCCGCCTGCTGCACAGCACCGAGCGAGGTGAGCACTGCTGC TGCACCTGCTGGGTTGTGCCACAGGCATTGTGTCAGCGCTCACACCGCAT CGCCATGCTTCTGCATCACGTCCCGCGCAGATTTGCTAGCAGCGCAAGGA CGCCGGGCGTTTGTCAAAAGGTGTCGCCACAGCACCTCGCATCGTGCTCA ACGCTGATTTGTTACCCTACATGCTCTTCGAACCCCAACAGTGGACAACG CGTACCCCAGATCAACGTCGATCGGTGTGCCACATGTGCCTCTGCTTTTG CGGCATCGAGCGGACGCGTGCACTAGCGCGGTGCTGCGTTCTGAGCGTGG CACCAGTTGCTTTGTGCGTGTGATTACGCCTGCACGCGCTTAACCCCCAC CCCCCCGTCCCGCCTCCCCCGTGTGTGCGACGCGCAGTACCAGGCGACGC ACAAGCTGCTCAACAGCCTCGACAAGGTGCTGTCCGTGAGCAGCACGCTG CCG
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Coding sequence (CDS) from alignment at Contig_173:73320..74872-

>mRNA_15872 ID=mRNA_15872|Name=jgi.p|Trimin1|144771|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=333bp|location=Sequence derived from alignment at Contig_173:73320..74872- (Tribonema minus UTEX_B_3156 )
ATACCTGCGGAGCTGGAGCGGGTCCTCGAGGAGATGGCGAAGGAAGGCGT
GCCCTACTACACGTGGGCCGGCTTGAGAGAGCTGCTCGAGGCTAAGCTGG
TGGCCGTCATCGATGGTTTCAACGCCAGTTTCGGCTACGAGGAAGACAAG
GGTGGGCGGCCGTTTACGCAGCGGAAAACGGACCTGGTGGAGGCTTTGAG
GAGCTTCGATGGGGCGCCGTTTACTCTGCAGAGGTTGGCAGAGGTGCTCC
TGGAGCCGGAGCGGCAGTACCAGGCGACGCACAAGCTGCTCAACAGCCTC
GACAAGGTGCTGTCCGTGAGCAGCACGCTGCCG
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