mRNA_15857 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177604
Unique NamemRNA_15857
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|177604 vs. uniprot
Match: A0A835ZEC7_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC7_9STRA)

HSP 1 Score: 697 bits (1799), Expect = 3.870e-253
Identity = 363/363 (100.00%), Postives = 363/363 (100.00%), Query Frame = 1 
Query:    1 MSSTAAVAVAEARRRRSTREAGSAKAAHDAIRPFLSQEGASESATAAKLFMFDELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYPADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPHHQQRCVALC 1089
            MSSTAAVAVAEARRRRSTREAGSAKAAHDAIRPFLSQEGASESATAAKLFMFDELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYPADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPHHQQRCVALC
Sbjct:    1 MSSTAAVAVAEARRRRSTREAGSAKAAHDAIRPFLSQEGASESATAAKLFMFDELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYPADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPHHQQRCVALC 363
[Close]
BLAST of jgi.p|Trimin1|177604 vs. uniprot
Match: A0A835YXH6_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXH6_9STRA)

HSP 1 Score: 510 bits (1314), Expect = 5.160e-179
Identity = 265/336 (78.87%), Postives = 291/336 (86.61%), Query Frame = 1 
Query:   67 SAKAAHDAIRPFLSQEGASESATAAKLFMFDELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYPADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPHHQQR 1074
            S   +H+A   +LS+ GA+E+  AAK++MFDELG A+LLSH QE+ LG KIQQL+AME +RDQL+ ALRR PTD EWAEACGY  + R LFR AY + L AKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDP KGF+FSTYAAWWIQQAI+KAIAYHSRTIRLPVHVHNLLYSVRRARK L LELGR PTE ELA RVG+P +RLR+YLRASR+TISTE PS   GFNPQDQVLGDTL ARD VAPED AE GLFR RL EVM ALPEEERRVVTLRFGLEDG++RSLAE+A ASRCSK+WVRRTESRA+RKLRAP HQQR
Sbjct:   45 STSTSHEATVSYLSEHGAAEAKLAAKVYMFDELGTADLLSHKQEMELGYKIQQLVAMELIRDQLEVALRRQPTDSEWAEACGYTREHRELFRAAYTDCLHAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPAKGFKFSTYAAWWIQQAIFKAIAYHSRTIRLPVHVHNLLYSVRRARKNLTLELGRAPTEGELASRVGVPLERLRKYLRASRSTISTEIPSASSGFNPQDQVLGDTLVARDMVAPEDSAEMGLFRKRLEEVMLALPEEERRVVTLRFGLEDGKSRSLAEIASASRCSKDWVRRTESRAMRKLRAPQHQQR 380
[Close]
BLAST of jgi.p|Trimin1|177604 vs. uniprot
Match: B7FPT1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPT1_PHATC)

HSP 1 Score: 271 bits (692), Expect = 1.500e-85
Identity = 154/312 (49.36%), Postives = 202/312 (64.74%), Query Frame = 1 
Query:  169 RAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYPADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQD------QVLGDTLEAR----DTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPHHQQR 1074
            R ELL+ D+E  LG KIQ ++  E + + L + L R PT +EWA ACG  A     F +       AK  MV SNMRLV+++A++Y  +GV L DLVQEGSLGL RAAEK++P KGF+FSTYA+WWIQQA++++IAYHSRTIRLPVHVHNLL  VR+ R  L  EL RTPT  E+A  +GM   +  + LR ++ +IS E P  K   NP+D       +LGDT+ A     D   PE   +RG+F   L E++  L E+ERRV+  R+GL DG TR++  VA   + SK WVR  E RALRKLR P ++++
Sbjct:    8 RTELLTADEEYSLGMKIQFMIKCELVHEGLSSKLMRLPTIEEWAAACGGTATD---FVEMVMTSREAKQRMVQSNMRLVVSIARKYSNVGVSLQDLVQEGSLGLSRAAEKFEPKKGFKFSTYASWWIQQAVFRSIAYHSRTIRLPVHVHNLLNRVRKVRNNLQRELSRTPTNEEMAEELGMTLQKYNKMLRLTKRSISLETP--KYQSNPKDLGHESHDLLGDTISASSALFDESTPEKRVDRGIFHEDLHEMLEILDEDERRVICSRYGLSDGLTRTVTAVASQMKQSKAWVRSQECRALRKLRRPWYEKK 314
[Close]
BLAST of jgi.p|Trimin1|177604 vs. uniprot
Match: B8C0J0_THAPS (Plastid RNA polymerase sigma factor (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0J0_THAPS)

HSP 1 Score: 260 bits (665), Expect = 1.590e-81
Identity = 147/312 (47.12%), Postives = 201/312 (64.42%), Query Frame = 1 
Query:  169 RAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYPADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQD------QVLGDTLEAR----DTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPHHQQR 1074
            + ELL+  +E  LG K++ ++  E++ + L   + R P+  EWA AC       RLFR+       AK  MV  NMRLV+++A+RY  +GV + DLVQEGSLGL RAAEK+DP KGF+FSTYA+WWIQQA++++IAYHSRTIRLPVHVHNLL  VRRAR+ L  ELGRTPT  E+AV + M  ++  + +R +R  IS E P  K   NP+D       ++GD +++     D   PE   + GL    +  ++G L E+ER V+ LR+G+ DG TR++  VA   R +K WVR  E RALRKLR P +++R
Sbjct:    1 KTELLTAKEEYSLGMKVKFMVKCEAVHEGLSVEMGRSPSIAEWAAACSP-----RLFREMMLTAKEAKQRMVQCNMRLVVSIARRYHGVGVNVQDLVQEGSLGLARAAEKFDPKKGFKFSTYASWWIQQAVFRSIAYHSRTIRLPVHVHNLLNKVRRARQVLQQELGRTPTNEEMAVEMDMTIEKYNKMIRTTRNAISLERPKYKN--NPKDLGHESEALVGDMVDSSAVIFDEKTPEQNVDHGLLHNDIEYMLGKLGEDERSVLCLRYGINDGITRTVTLVASEMRQTKSWVRSQECRALRKLRRPWYEKR 305
[Close]
BLAST of jgi.p|Trimin1|177604 vs. uniprot
Match: A0A357AD46_9CYAN (RNA polymerase sigma factor SigA n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A357AD46_9CYAN)

HSP 1 Score: 251 bits (642), Expect = 2.220e-77
Identity = 141/301 (46.84%), Postives = 196/301 (65.12%), Query Frame = 1 
Query:  160 ELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYPADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPH 1062
            E+GR  LL  D+E+ L +KI  L+ +E LRD L+  L R P+D EWAE+ G P  Q   FR       RAK  MV SN+RLV+++AK+Y   G+   DL+QEGSLGLIRAAEK+D +KG++FSTYA WWI+QAI +AIA  SRTIRLPVH++  +  +++  K L  E+GR PTE E+A R+ M  ++LR   ++++  IS E P GK     +D  LGD +E+ D   PED   + L R  L  V+G L   ER V+ LR+GL+DGR ++L E+      ++E +R+ E++ALRKLR P+
Sbjct:   71 EIGRIRLLRADEEIELARKIADLLELERLRDDLEDGLEREPSDAEWAESVGMPLPQ---FRYRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKE----EDSRLGDFIES-DGETPEDEVSKSLLREDLEGVLGTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPN 363
[Close]
BLAST of jgi.p|Trimin1|177604 vs. uniprot
Match: A0A1Z3HQF2_9CYAN (RNA polymerase sigma factor SigA n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A1Z3HQF2_9CYAN)

HSP 1 Score: 251 bits (640), Expect = 4.300e-77
Identity = 142/303 (46.86%), Postives = 198/303 (65.35%), Query Frame = 1 
Query:  160 ELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEAC--GYPADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPH 1062
            E+GR  LL  ++E+ L +KI  L+ +E +RD L  +L R P DDEWAEA     PA +RRL +       RAK  MV SN+RLV+++AK+Y   G+   DL+QEGSLGLIRAAEK+D +KG++FSTYA WWI+QAI +AIA  SRTIRLPVH++  +  +++  K L  ELGR PTE E+A R+ M  ++LR   ++++  IS E P GK     +D  LGD +E+ D   PED   + L R  L  V+G L   ER V+ LR+GL+DGR ++L E+      ++E +R+ E++ALRKLR P+
Sbjct:   70 EIGRIRLLRAEEEIELARKIADLLELERIRDDLVDSLEREPRDDEWAEAVDMALPAFRRRLHQGR-----RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKE----EDSRLGDFIES-DGETPEDEVSKSLLREDLESVLGTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPN 362
[Close]
BLAST of jgi.p|Trimin1|177604 vs. uniprot
Match: Q59965_SYNP2 (RNA polymerase sigma factor SigA n=7 Tax=Cyanobacteria TaxID=1117 RepID=Q59965_SYNP2)

HSP 1 Score: 249 bits (636), Expect = 1.870e-76
Identity = 147/322 (45.65%), Postives = 203/322 (63.04%), Query Frame = 1 
Query:  124 ESATAAKLFMFD-------ELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYPAD--QRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPH 1062
            E+AT  K +  D       E+GR  LL  ++E+ L +KI  L+ +E +R+QL     R PTD EWAEA G P    +RRLF        RAK  MV SN+RLV+++AK+Y   G+   DL+QEGSLGLIRAAEK+D +KG++FSTYA WWI+QAI +AIA  SRTIRLPVH++  +  +++  K L  ELGR PTE E+A R+ M  ++LR   ++++  IS E P GK     +D  LGD +EA D   PED   + L R  L  V+  L   ER V+ LR+GL+DGR ++L E+      ++E +R+ E++ALRKLR P+
Sbjct:   54 ETATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGR-----RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKE----EDSRLGDFIEA-DGETPEDQVSKSLLREDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPN 365
[Close]
BLAST of jgi.p|Trimin1|177604 vs. uniprot
Match: A0A6I5RBY2_9CYAN (RNA polymerase sigma factor SigA n=6 Tax=Cyanobacteria TaxID=1117 RepID=A0A6I5RBY2_9CYAN)

HSP 1 Score: 249 bits (635), Expect = 2.280e-76
Identity = 141/303 (46.53%), Postives = 198/303 (65.35%), Query Frame = 1 
Query:  160 ELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYP--ADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPH 1062
            E+GR  LL  ++E+ L +KI  L+ +E +RDQL  +L R P D EWAEA   P  A Q+RL+        RAK  MV SN+RLV+++AK+Y   G+   DL+QEGSLGLIRAAEK+D +KG++FSTYA WWI+QAI +AIA  SRTIRLPVH++  +  +++  K L  ELGR P+E E+A R+ M  ++LR   ++++  IS E P GK     +D  LGD +E+ D   PED   + L R  L  V+G L   ER V+ LR+GL+DGR ++L E+      ++E +R+ E++ALRKLR P+
Sbjct:   68 EIGRIRLLRAEEEIELARKIADLLELERIRDQLMDSLEREPNDAEWAEAVDMPLPAFQKRLYIGR-----RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPSEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKE----EDSRLGDFIES-DGETPEDEVSKNLLREDLEGVLGTLSARERDVLRLRYGLDDGRMKTLEEIGQTFNVTRERIRQIEAKALRKLRHPN 360
[Close]
BLAST of jgi.p|Trimin1|177604 vs. uniprot
Match: SIGA1_SYNE7 (RNA polymerase sigma factor SigA1 n=5 Tax=Synechococcus TaxID=1129 RepID=SIGA1_SYNE7)

HSP 1 Score: 249 bits (636), Expect = 3.740e-76
Identity = 142/303 (46.86%), Postives = 198/303 (65.35%), Query Frame = 1 
Query:  160 ELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYPADQ--RRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPH 1062
            E+GR  LL  D+E+ L ++I  L+A+E +RD+L   L R P+D EWA A   P D+  RRLFR       RAK  MV SN+RLV+++AK+Y   G+   DL+QEGSLGLIRAAEK+D +KG++FSTYA WWI+QAI +AIA  SRTIRLPVH++  +  +++  K L  E+GR PTE E+A R+ M  ++LR   ++++  IS E P GK     +D  LGD +EA D   PED   + L R  L  V+  L   ER V+ LR+GL+DGR ++L E+      ++E +R+ E++ALRKLR P+
Sbjct:   97 EIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGR-----RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKE----EDSRLGDFIEA-DGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPN 389
[Close]
BLAST of jgi.p|Trimin1|177604 vs. uniprot
Match: UPI0019E2248B (RNA polymerase sigma factor RpoD n=2 Tax=Leptolyngbyaceae TaxID=1890438 RepID=UPI0019E2248B)

HSP 1 Score: 248 bits (633), Expect = 5.110e-76
Identity = 142/303 (46.86%), Postives = 198/303 (65.35%), Query Frame = 1 
Query:  160 ELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYP--ADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPH 1062
            E+GR  LL  ++E+ L +KI  L+ +E +RDQL  +L+R P D EWAEA   P  A Q+RL         RAK  MV SN+RLV+++AK+Y   G+   DL+QEGSLGLIRAAEK+D +KG++FSTYA WWI+QAI +AIA  SRTIRLPVH++  +  +++  K L  ELGR PTE E+A R+ M  ++LR   ++++  IS E P GK     +D  LGD +E+ D   PED   + L R  L  V+G L   ER V+ LR+GL+DGR ++L E+      ++E +R+ E++ALRKLR P+
Sbjct:   72 EIGRIRLLRAEEEIELARKIADLLELERIRDQLMDSLQREPHDAEWAEAVDMPLPAFQKRLHIGR-----RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKE----EDSRLGDFIES-DGETPEDEVSKSLLREDLEGVLGTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPN 364
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177604 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZEC7_9STRA3.870e-253100.00RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A835YXH6_9STRA5.160e-17978.87RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
B7FPT1_PHATC1.500e-8549.36Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
B8C0J0_THAPS1.590e-8147.12Plastid RNA polymerase sigma factor (Fragment) n=1... [more]
A0A357AD46_9CYAN2.220e-7746.84RNA polymerase sigma factor SigA n=2 Tax=Cyanobact... [more]
A0A1Z3HQF2_9CYAN4.300e-7746.86RNA polymerase sigma factor SigA n=2 Tax=Pseudanab... [more]
Q59965_SYNP21.870e-7645.65RNA polymerase sigma factor SigA n=7 Tax=Cyanobact... [more]
A0A6I5RBY2_9CYAN2.280e-7646.53RNA polymerase sigma factor SigA n=6 Tax=Cyanobact... [more]
SIGA1_SYNE73.740e-7646.86RNA polymerase sigma factor SigA1 n=5 Tax=Synechoc... [more]
UPI0019E2248B5.110e-7646.86RNA polymerase sigma factor RpoD n=2 Tax=Leptolyng... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_155contigContig_155:289974..292686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177604|e_gw1.155.4.1
DescriptionSigma-70 region 3
COG categoryK
Max annot lvl2836|Bacillariophyta
EggNOG OGsCOG0568@1|root,2QV7Q@2759|Eukaryota,2XE8Y@2836|Bacillariophyta
Evalue2.46e-86
Seed ortholog2850.Phatr9312
Hectar predicted targeting categoryother localisation
TranscriptId177926
TrackFilteredModels1
ProteinId177604
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177604gene_15857Tribonema minus UTEX_B_3156 geneContig_155 289974..292686 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177604Trimin1|177604|e_gw1.155.4.1Tribonema minus UTEX_B_3156 polypeptideContig_155 289974..292686 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15857_6exon_15857_6Tribonema minus UTEX_B_3156 exonContig_155 289974..290264 -
exon_15857_5exon_15857_5Tribonema minus UTEX_B_3156 exonContig_155 290637..290735 -
exon_15857_4exon_15857_4Tribonema minus UTEX_B_3156 exonContig_155 291072..291206 -
exon_15857_3exon_15857_3Tribonema minus UTEX_B_3156 exonContig_155 291471..291726 -
exon_15857_2exon_15857_2Tribonema minus UTEX_B_3156 exonContig_155 292065..292180 -
exon_15857_1exon_15857_1Tribonema minus UTEX_B_3156 exonContig_155 292492..292686 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15857CDS_15857Tribonema minus UTEX_B_3156 CDSContig_155 292492..292686 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15857 ID=mRNA_15857|Name=jgi.p|Trimin1|177604|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1092bp|location=Sequence derived from alignment at Contig_155:289974..292686- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAGCACCGCCGCGGTGGCAGTAGCGGAAGCCAGGCGGCGGCGGAG
CACCAGGGAAGCTGGCTCTGCCAAGGCAGCGCACGATGCCATCAGGCCTT
TTCTGTCTCAGGAGGGAGCCAGCGAGTCTGCCACGGCAGCCAAGCTTTTC
ATGTTTGATGAGCTGGGCAGGGCCGAGCTCCTCTCTCACGACCAGGAAGT
GGTGCTGGGGAAAAAGATTCAGCAGCTGATGGCAATGGAGTCATTGAGGG
ATCAGCTGCAGGCAGCACTAAGGCGACCGCCCACAGATGATGAATGGGCA
GAGGCTTGCGGGTACCCCGCCGACCAGCGACGGCTGTTCCGTGACGCGTA
CCGCGAGCGCCTGCGCGCCAAACACGCCATGGTCTCTAGCAACATGCGGC
TGGTGATTGCGGTGGCCAAGCGCTACGGGCGCATGGGCGTGCCGCTGTCG
GACCTGGTGCAGGAGGGTTCGCTGGGGCTGATCCGCGCGGCGGAGAAGTA
CGACCCCGATAAGGGCTTCAGGTTCTCCACGTACGCCGCGTGGTGGATCC
AGCAGGCCATCTACAAGGCAATAGCATACCACAGCCGCACCATCCGGTTG
CCAGTGCACGTGCACAACCTCCTGTATAGCGTGCGGCGGGCGAGGAAAGC
ACTTGTTCTGGAGCTGGGCAGGACTCCAACGGAGGCAGAACTGGCTGTGC
GGGTCGGCATGCCACAGGACCGGCTAAGGCGGTACCTGCGCGCCTCGCGC
ACGACCATCTCCACGGAGTGCCCATCTGGCAAGCCGGGCTTCAACCCGCA
GGACCAAGTGCTGGGCGACACGCTCGAGGCGCGCGACACCGTGGCGCCAG
AGGACTGCGCGGAGCGCGGCCTCTTCCGCACGCGCCTGCGCGAGGTCATG
GGCGCCCTGCCGGAGGAGGAGCGGCGCGTGGTGACGCTCCGCTTTGGACT
TGAAGATGGCCGCACGCGCTCGCTGGCGGAGGTTGCGTGCGCATCGCGCT
GCTCCAAGGAGTGGGTGCGCCGCACGGAGTCGCGCGCGCTGCGCAAGCTG
CGCGCGCCGCACCACCAGCAGAGGTGCGTCGCTCTCTGTTGA
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protein sequence of jgi.p|Trimin1|177604

>Trimin1|177604|e_gw1.155.4.1 ID=Trimin1|177604|e_gw1.155.4.1|Name=jgi.p|Trimin1|177604|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=364bp
MSSTAAVAVAEARRRRSTREAGSAKAAHDAIRPFLSQEGASESATAAKLF
MFDELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWA
EACGYPADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLS
DLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRL
PVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASR
TTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVM
GALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKL
RAPHHQQRCVALC*
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mRNA from alignment at Contig_155:289974..292686-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15857 ID=mRNA_15857|Name=jgi.p|Trimin1|177604|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2713bp|location=Sequence derived from alignment at Contig_155:289974..292686- (Tribonema minus UTEX_B_3156 )
ATGTCGAGCACCGCCGCGGTGGCAGTAGCGGAAGCCAGGCGGCGGCGGAG
CACCAGGGAAGCTGGCTCTGCCAAGGCAGCGCACGATGCCATCAGGCCTT
TTCTGTCTCAGGAGGGAGCCAGCGAGTCTGCCACGGCAGCCAAGCTTTTC
ATGTTTGATGAGCTGGGCAGGGCCGAGCTCCTCTCTCACGACCAGGTAAC
AAGATTAACTCATTGCGGCGTGGCGTTAGATGCCCTAGTCAGTCTTTGAC
GGGGAGCAGAGATGGCATGCTCGAACTTACATGAGCTGTTATTGCACTCT
GAGGCATTTCGACCCGGCTCCCTGTGAAAACGGCAATTTCGTTTCGCGCG
TTTGAAGATTAGGCTTGAAAATGCCCATCATGCTAGAGAGCTTACGTTGA
CTGCACACAATGATACTCGCAGCTTGTCGACAACACCAGTTCTTGAATGT
CTTCGTGGCACAGCCTAGCGCATCTGATGCAGACGCCTCTTCTGCCAAAT
TTCCAGGAAGTGGTGCTGGGGAAAAAGATTCAGCAGCTGATGGCAATGGA
GTCATTGAGGGATCAGCTGCAGGCAGCACTAAGGCGACCGCCCACAGATG
ATGAATGGGCAGAGGCTTGCGGGTAAGACCTAAACACAATGTTCATTACG
GTAGTGCAGTTGTGTGCACACGACTTCTATGCTTCTTCGTGTTCACAGCT
TCAATGGCGTGTTCACAGCAACGCATCGTACGCAGGTGCTTAATGCACCG
CTGCGCGATGGAACACACATCAGTTCTCTTAGTGTCCTAATCGTTATGAT
CGCATTTGCCAGCCTGTAAATCTTGCGACTTCAGCTCTGCAAGTTCACTT
CAAACATTTGAGACTGTGTTGGCACATGAATGGCGCACTCACATGCCCAT
GTAGGCATACACATTGCTCACACCGTACACCAAACGCCGCTGCTGCCTCT
CTCTGTTCAGGTACCCCGCCGACCAGCGACGGCTGTTCCGTGACGCGTAC
CGCGAGCGCCTGCGCGCCAAACACGCCATGGTCTCTAGCAACATGCGGCT
GGTGATTGCGGTGGCCAAGCGCTACGGGCGCATGGGCGTGCCGCTGTCGG
ACCTGGTGCAGGAGGGTTCGCTGGGGCTGATCCGCGCGGCGGAGAAGTAC
GACCCCGATAAGGGCTTCAGGTTCTCCACGTACGCCGCGTGGTGGATCCA
GCAGGCCATCTACAAGGTGCGCGCGTGTGTTGAGCGCGCTACGGACTGCT
GCTGCCATGCTGTCAACTGTGAGGCGGCGGCTGATACGTACGCATTTGTG
ATTTGTGCAGGTGCCCTGTATAGTTTGTGTCACACAGTGACACTTGACTC
CATGATGTTCTGGTTGCAGAGCAGCTGCTGTTGGAAGCGCTGCTGTACCT
GTTGTCTGCTGGTTGCTCAGCAATGAAAGCGCGCAGCCTAACTGACAGTT
TGTCTCGTACGCTGACTCTGAATGATGCAGGCAATAGCATACCACAGCCG
CACCATCCGGTTGCCAGTGCACGTGCACAACCTCCTGTATAGCGTGCGGC
GGGCGAGGAAAGCACTTGTTCTGGAGCTGGGCAGGACTCCAACGGAGGCA
GAACTGGCTGTGCGGGTGAGCAACGGAGCACTGGCTCGAACTGTGGGAAT
AAGTTGCATTGCTGTACCGCAAGTCACGGTGGACACCATGCACCACTTGT
AACAGTGTGTAGTGGGACAACAGGCAGGTGGTATGCCGTGGCGACTTGTG
CGTAACTTAAAGTCAACGTGCCAGCACCAGCCTGCCCTGCAGTTGTAGTC
ACGAGTGAGGCAGGGGCTGCACCTGGTCACTGGTTATAGAGAATGTCATG
TTCACAAAAGCTATCAATTGCACTAGGAACAGTGCTGCTGCTGGCATCCA
CAGTCCGTCACTCAAATTGCCTGTGTCGCTGTGTGTGTCGCTGCTCTGCA
GGTCGGCATGCCACAGGACCGGCTAAGGCGGTACCTGCGCGCCTCGCGCA
CGACCATCTCCACGGAGTGCCCATCTGGCAAGCCGGGCTTCAACCCGCAG
GTGAGCACTGCTGCTGGTACTTGAACTTGCCAATGTGTATGTACGTTGGC
AGCACGCATGCTGTTGGTTCAACATTGGTGTATGTGTCCGCTGTCGCCGG
CTGCGGACGCAACACAATCTCTCCGCCGCTCTAAGTACAGGAGCACAGTG
GCATCCTGGTGGTGAGTTGACACTGGGCATAGTCAGGCCGCATGCTCACC
GAACATCATGCCCTCACCCAGCAGCTGCACTCTTCTACCTAGTACCACCG
ACATTTGCCGCACCCCCTTACAGCCCCCCCCCCCCCCCCCCCAGCAGTCG
AACTTTTCTCGTATCACCCGCAGCTGCCACGCCCCCTTACACTCCTACGC
GCCCCCCCCCCCCTCCCCTCAGGACCAAGTGCTGGGCGACACGCTCGAGG
CGCGCGACACCGTGGCGCCAGAGGACTGCGCGGAGCGCGGCCTCTTCCGC
ACGCGCCTGCGCGAGGTCATGGGCGCCCTGCCGGAGGAGGAGCGGCGCGT
GGTGACGCTCCGCTTTGGACTTGAAGATGGCCGCACGCGCTCGCTGGCGG
AGGTTGCGTGCGCATCGCGCTGCTCCAAGGAGTGGGTGCGCCGCACGGAG
TCGCGCGCGCTGCGCAAGCTGCGCGCGCCGCACCACCAGCAGAGGTGCGT
CGCTCTCTGTTGA
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Coding sequence (CDS) from alignment at Contig_155:289974..292686-

>mRNA_15857 ID=mRNA_15857|Name=jgi.p|Trimin1|177604|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1092bp|location=Sequence derived from alignment at Contig_155:289974..292686- (Tribonema minus UTEX_B_3156 )
ATGTCGAGCACCGCCGCGGTGGCAGTAGCGGAAGCCAGGCGGCGGCGGAG
CACCAGGGAAGCTGGCTCTGCCAAGGCAGCGCACGATGCCATCAGGCCTT
TTCTGTCTCAGGAGGGAGCCAGCGAGTCTGCCACGGCAGCCAAGCTTTTC
ATGTTTGATGAGCTGGGCAGGGCCGAGCTCCTCTCTCACGACCAGGAAGT
GGTGCTGGGGAAAAAGATTCAGCAGCTGATGGCAATGGAGTCATTGAGGG
ATCAGCTGCAGGCAGCACTAAGGCGACCGCCCACAGATGATGAATGGGCA
GAGGCTTGCGGGTACCCCGCCGACCAGCGACGGCTGTTCCGTGACGCGTA
CCGCGAGCGCCTGCGCGCCAAACACGCCATGGTCTCTAGCAACATGCGGC
TGGTGATTGCGGTGGCCAAGCGCTACGGGCGCATGGGCGTGCCGCTGTCG
GACCTGGTGCAGGAGGGTTCGCTGGGGCTGATCCGCGCGGCGGAGAAGTA
CGACCCCGATAAGGGCTTCAGGTTCTCCACGTACGCCGCGTGGTGGATCC
AGCAGGCCATCTACAAGGCAATAGCATACCACAGCCGCACCATCCGGTTG
CCAGTGCACGTGCACAACCTCCTGTATAGCGTGCGGCGGGCGAGGAAAGC
ACTTGTTCTGGAGCTGGGCAGGACTCCAACGGAGGCAGAACTGGCTGTGC
GGGTCGGCATGCCACAGGACCGGCTAAGGCGGTACCTGCGCGCCTCGCGC
ACGACCATCTCCACGGAGTGCCCATCTGGCAAGCCGGGCTTCAACCCGCA
GGACCAAGTGCTGGGCGACACGCTCGAGGCGCGCGACACCGTGGCGCCAG
AGGACTGCGCGGAGCGCGGCCTCTTCCGCACGCGCCTGCGCGAGGTCATG
GGCGCCCTGCCGGAGGAGGAGCGGCGCGTGGTGACGCTCCGCTTTGGACT
TGAAGATGGCCGCACGCGCTCGCTGGCGGAGGTTGCGTGCGCATCGCGCT
GCTCCAAGGAGTGGGTGCGCCGCACGGAGTCGCGCGCGCTGCGCAAGCTG
CGCGCGCCGCACCACCAGCAGAGGTGCGTCGCTCTCTGTTGA
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