mRNA_15826 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177608
Unique NamemRNA_15826
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|177608 vs. uniprot
Match: A0A836CKM6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKM6_9STRA)

HSP 1 Score: 253 bits (647), Expect = 3.360e-81
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1 
Query:    1 MSRNIFERIGDFTGLTVLDLNHYRLRTLSLLPESIGNLAALETLGLSEWKAIARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLRCCNTRVATLSEQCIGGLASLSKFSWGGKPENAAAIQVPRGIGKLQALTALSLHSSRLTRLPDGICDLEALKLLDLCCCHAL 594
            MSRNIFERIGDFTGLTVLDLNHYRLRTLSLLPESIGNLAALETLGLSEWKAIARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLRCCNTRVATLSEQCIGGLASLSKFSWGGKPENAAAIQVPRGIGKLQALTALSLHSSRLTRLPDGICDLEALKLLDLCCCHAL
Sbjct:    1 MSRNIFERIGDFTGLTVLDLNHYRLRTLSLLPESIGNLAALETLGLSEWKAIARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLRCCNTRVATLSEQCIGGLASLSKFSWGGKPENAAAIQVPRGIGKLQALTALSLHSSRLTRLPDGICDLEALKLLDLCCCHAL 198
[Close]
BLAST of jgi.p|Trimin1|177608 vs. uniprot
Match: A0A835ZCG3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCG3_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 5.890e-11
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 MSRNIFERIGDFTGLTVLDLNHYRLRTLSLLPESIGNLAALETLGLSEWKAIAR 162
            MSRN+F RIGDFTGLTVLDL+H+ +R    LPE+I N+  LETL L +W AI R
Sbjct:  466 MSRNVFARIGDFTGLTVLDLSHFSVRNTPHLPEAICNIMGLETLRLKDWAAITR 519
[Close]
BLAST of jgi.p|Trimin1|177608 vs. uniprot
Match: A0A835ZG33_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG33_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.120e-8
Identity = 104/148 (70.27%), Postives = 114/148 (77.03%), Query Frame = 1 
Query:   82 LSLLPESIGNLAALETLGLSEWKAIARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLRCCNTRVATLS--EQCIGGLASLSKFSWGGKPENAAAIQVPRGIGKLQALTALSLHSSR 519
            + LLPESIGNL ALETL L  W+A+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       C  T +ATLS  E C+GGLA+L+  SWG   E A A++VPR IG LQALT L +  SR
Sbjct:    1 MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLRTSICWQTGIATLSDSEHCLGGLAALTDLSWG-THELADAVRVPRSIGALQALTKLHITCSR 147
[Close]
BLAST of jgi.p|Trimin1|177608 vs. uniprot
Match: A0A836CND2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND2_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.630e-7
Identity = 100/149 (67.11%), Postives = 111/149 (74.50%), Query Frame = 1 
Query:   82 LSLLPESIGNLAALETLGLSEWKAIARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLRCCNTRVATLS--EQCIGGLASLSKFSWGGKPENAAAIQVPRGIGKLQALTALSLHSSRL 522
            + LLPESIGNL ALETL L  W+A+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          C  T +ATLS  E C+ GLA+L+  SWG + E A A+ VPR IG  +ALT LS+  SRL
Sbjct:    1 MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGLARLRTFICWQTGLATLSASEHCLRGLAALTDLSWGTR-EPADAVSVPRSIGAFRALTKLSITCSRL 148
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177608 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CKM6_9STRA3.360e-81100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCG3_9STRA5.890e-1162.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZG33_9STRA4.120e-870.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CND2_9STRA2.630e-767.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_155contigContig_155:35315..36097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177608|e_gw1.155.18.1
Hectar predicted targeting categoryother localisation
TranscriptId177930
TrackFilteredModels1
ProteinId177608
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177608gene_15826Tribonema minus UTEX_B_3156 geneContig_155 35315..36097 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15826_1exon_15826_1Tribonema minus UTEX_B_3156 exonContig_155 35315..36097 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15826CDS_15826Tribonema minus UTEX_B_3156 CDSContig_155 35315..36097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177608Trimin1|177608|e_gw1.155.18.1Tribonema minus UTEX_B_3156 polypeptideContig_155 35315..36097 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15826 ID=mRNA_15826|Name=jgi.p|Trimin1|177608|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=783bp|location=Sequence derived from alignment at Contig_155:35315..36097+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGTAATATTTTCGAGCGCATAGGCGACTTCACAGGCCTGACGGT
GCTAGACCTCAACCATTATCGCCTACGCACCTTATCACTTTTGCCAGAGT
CCATCGGCAACCTTGCAGCGCTCGAGACATTAGGGCTGTCGGAGTGGAAG
GCAATCGCGCGCCTGCCCGACAGCATTGTCAAGCTGCGGCGGCTGCGCAC
ACTTGATCTCGCCGCCTGTGAGGCGCTGACCATGCTGCCGGAGCGCATAG
AGGACCTGGCATCCCTGACCATTCTCAATCTCAACTACTGCAAGCAGCTT
GCAGGCTTGCCGGACAGCTTCTACAACCTCACAAAGCTGACGAATCTCCG
CTGCTGCAATACGAGGGTAGCGACGCTGTCAGAGCAGTGCATTGGGGGCC
TTGCGTCACTCAGCAAGTTCAGCTGGGGGGGAAAGCCCGAAAATGCAGCA
GCCATACAGGTGCCGCGCGGCATTGGCAAACTTCAGGCATTGACAGCACT
GAGCCTGCACTCCTCACGGCTTACAAGATTGCCGGATGGCATCTGTGACC
TTGAGGCATTGAAGCTGCTCGATCTGTGCTGCTGCCATGCACTGACGCAC
CTGCCGGCTCGCATTGGCGAGCTTCAAGCGCTGACCTACCTCGATCTTTC
GCAGTGCTACGCGCTGTCCAGCCTGCCTGATTCCATAGTGCACCTGAGAG
CACTCAGGCACGTGGATCTAGATCAATGCAGGCTGCTGGCCAACATCCCA
CAGAGTATACAAAAGGTAGCGCAGGAACACTGA
back to top

protein sequence of jgi.p|Trimin1|177608

>Trimin1|177608|e_gw1.155.18.1 ID=Trimin1|177608|e_gw1.155.18.1|Name=jgi.p|Trimin1|177608|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=261bp
MSRNIFERIGDFTGLTVLDLNHYRLRTLSLLPESIGNLAALETLGLSEWK
AIARLPDSIVKLRRLRTLDLAACEALTMLPERIEDLASLTILNLNYCKQL
AGLPDSFYNLTKLTNLRCCNTRVATLSEQCIGGLASLSKFSWGGKPENAA
AIQVPRGIGKLQALTALSLHSSRLTRLPDGICDLEALKLLDLCCCHALTH
LPARIGELQALTYLDLSQCYALSSLPDSIVHLRALRHVDLDQCRLLANIP
QSIQKVAQEH*
back to top

mRNA from alignment at Contig_155:35315..36097+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15826 ID=mRNA_15826|Name=jgi.p|Trimin1|177608|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=783bp|location=Sequence derived from alignment at Contig_155:35315..36097+ (Tribonema minus UTEX_B_3156 )
ATGTCGCGTAATATTTTCGAGCGCATAGGCGACTTCACAGGCCTGACGGT
GCTAGACCTCAACCATTATCGCCTACGCACCTTATCACTTTTGCCAGAGT
CCATCGGCAACCTTGCAGCGCTCGAGACATTAGGGCTGTCGGAGTGGAAG
GCAATCGCGCGCCTGCCCGACAGCATTGTCAAGCTGCGGCGGCTGCGCAC
ACTTGATCTCGCCGCCTGTGAGGCGCTGACCATGCTGCCGGAGCGCATAG
AGGACCTGGCATCCCTGACCATTCTCAATCTCAACTACTGCAAGCAGCTT
GCAGGCTTGCCGGACAGCTTCTACAACCTCACAAAGCTGACGAATCTCCG
CTGCTGCAATACGAGGGTAGCGACGCTGTCAGAGCAGTGCATTGGGGGCC
TTGCGTCACTCAGCAAGTTCAGCTGGGGGGGAAAGCCCGAAAATGCAGCA
GCCATACAGGTGCCGCGCGGCATTGGCAAACTTCAGGCATTGACAGCACT
GAGCCTGCACTCCTCACGGCTTACAAGATTGCCGGATGGCATCTGTGACC
TTGAGGCATTGAAGCTGCTCGATCTGTGCTGCTGCCATGCACTGACGCAC
CTGCCGGCTCGCATTGGCGAGCTTCAAGCGCTGACCTACCTCGATCTTTC
GCAGTGCTACGCGCTGTCCAGCCTGCCTGATTCCATAGTGCACCTGAGAG
CACTCAGGCACGTGGATCTAGATCAATGCAGGCTGCTGGCCAACATCCCA
CAGAGTATACAAAAGGTAGCGCAGGAACACTGA
back to top

Coding sequence (CDS) from alignment at Contig_155:35315..36097+

>mRNA_15826 ID=mRNA_15826|Name=jgi.p|Trimin1|177608|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=783bp|location=Sequence derived from alignment at Contig_155:35315..36097+ (Tribonema minus UTEX_B_3156 )
ATGTCGCGTAATATTTTCGAGCGCATAGGCGACTTCACAGGCCTGACGGT
GCTAGACCTCAACCATTATCGCCTACGCACCTTATCACTTTTGCCAGAGT
CCATCGGCAACCTTGCAGCGCTCGAGACATTAGGGCTGTCGGAGTGGAAG
GCAATCGCGCGCCTGCCCGACAGCATTGTCAAGCTGCGGCGGCTGCGCAC
ACTTGATCTCGCCGCCTGTGAGGCGCTGACCATGCTGCCGGAGCGCATAG
AGGACCTGGCATCCCTGACCATTCTCAATCTCAACTACTGCAAGCAGCTT
GCAGGCTTGCCGGACAGCTTCTACAACCTCACAAAGCTGACGAATCTCCG
CTGCTGCAATACGAGGGTAGCGACGCTGTCAGAGCAGTGCATTGGGGGCC
TTGCGTCACTCAGCAAGTTCAGCTGGGGGGGAAAGCCCGAAAATGCAGCA
GCCATACAGGTGCCGCGCGGCATTGGCAAACTTCAGGCATTGACAGCACT
GAGCCTGCACTCCTCACGGCTTACAAGATTGCCGGATGGCATCTGTGACC
TTGAGGCATTGAAGCTGCTCGATCTGTGCTGCTGCCATGCACTGACGCAC
CTGCCGGCTCGCATTGGCGAGCTTCAAGCGCTGACCTACCTCGATCTTTC
GCAGTGCTACGCGCTGTCCAGCCTGCCTGATTCCATAGTGCACCTGAGAG
CACTCAGGCACGTGGATCTAGATCAATGCAGGCTGCTGGCCAACATCCCA
CAGAGTATACAAAAGGTAGCGCAGGAACACTGA
back to top