mRNA_15801 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353594
Unique NamemRNA_15801
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|353594 vs. uniprot
Match: A0A835Z6T6_9STRA (Wheel domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6T6_9STRA)

HSP 1 Score: 875 bits (2262), Expect = 0.000e+0
Identity = 537/537 (100.00%), Postives = 537/537 (100.00%), Query Frame = 1
Query:    1 MSPTYRTVALALHWMEAQRRTVALRRGSASDTRDRSAQRDATSAPPGPPRLHRVRWRDAPRLRVSCATHGGAHTGTARESRKARTGVTMRGIGAPPHEGNERFKRTRLNKMYFKHAALFYTEAIKHAVMAEQTADMVRLRATVLANRAAANLGIKNYGXXXXXXXXXXXXSVRRHCDESLRLQPGNSXXXXXXNVNVXXXXXXXXXXXXXXVKCYFRKAKALEGLKQYDEAVDCCVEGLEIDPASKELTELRTRCAAEARDAAERAAAAXXXVRAXCXXXXXXFRAAAARGVALGPSAFDASHAHFGSDLAPTPDPDSDSSELLWPLLLLYPANGQSDVVRSVAERDTVGAHLAVVFPEGGPPPPWDAAAYEYRCSRLEAYARLGAARAFRDEADCADEVKASCGASLTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPRVRALRGLDTPEAAEKARAEVKQRARSADFDPNKARWLHVHPKCTVSQLLTHPEHVAAGGMVTLHVYARGSEAHAQFLRYNAPRIRELEP 1611
            MSPTYRTVALALHWMEAQRRTVALRRGSASDTRDRSAQRDATSAPPGPPRLHRVRWRDAPRLRVSCATHGGAHTGTARESRKARTGVTMRGIGAPPHEGNERFKRTRLNKMYFKHAALFYTEAIKHAVMAEQTADMVRLRATVLANRAAANLGIKNYGXXXXXXXXXXXXSVRRHCDESLRLQPGNSXXXXXXNVNVXXXXXXXXXXXXXXVKCYFRKAKALEGLKQYDEAVDCCVEGLEIDPASKELTELRTRCAAEARDAAERAAAAXXXVRAXCXXXXXXFRAAAARGVALGPSAFDASHAHFGSDLAPTPDPDSDSSELLWPLLLLYPANGQSDVVRSVAERDTVGAHLAVVFPEGGPPPPWDAAAYEYRCSRLEAYARLGAARAFRDEADCADEVKASCGASLTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPRVRALRGLDTPEAAEKARAEVKQRARSADFDPNKARWLHVHPKCTVSQLLTHPEHVAAGGMVTLHVYARGSEAHAQFLRYNAPRIRELEP
Sbjct:    1 MSPTYRTVALALHWMEAQRRTVALRRGSASDTRDRSAQRDATSAPPGPPRLHRVRWRDAPRLRVSCATHGGAHTGTARESRKARTGVTMRGIGAPPHEGNERFKRTRLNKMYFKHAALFYTEAIKHAVMAEQTADMVRLRATVLANRAAANLGIKNYGXXXXXXXXXXXXSVRRHCDESLRLQPGNSXXXXXXNVNVXXXXXXXXXXXXXXVKCYFRKAKALEGLKQYDEAVDCCVEGLEIDPASKELTELRTRCAAEARDAAERAAAAXXXVRAXCXXXXXXFRAAAARGVALGPSAFDASHAHFGSDLAPTPDPDSDSSELLWPLLLLYPANGQSDVVRSVAERDTVGAHLAVVFPEGGPPPPWDAAAYEYRCSRLEAYARLGAARAFRDEADCADEVKASCGASLTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPRVRALRGLDTPEAAEKARAEVKQRARSADFDPNKARWLHVHPKCTVSQLLTHPEHVAAGGMVTLHVYARGSEAHAQFLRYNAPRIRELEP 537          
BLAST of jgi.p|Trimin1|353594 vs. uniprot
Match: D7FKE3_ECTSI (Wheel domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKE3_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 3.020e-40
Identity = 123/440 (27.95%), Postives = 178/440 (40.45%), Query Frame = 1
Query:  295 GNERFKRTRLNKMYFKHAALFYTEAIKHAVMAEQTADMVRLRATVLANRAAANLGIKNYGXXXXXXXXXXXXSVRRHCDESLRLQPGNSXXXXXXNVNVXXXXXXXXXXXXXXVKCYFRKAKALEGLKQYDEAVDCCVEGLEIDPASKELTELRTRCAAEARDAAERAAAAXXXVRAXCXXXXXXFRAAAARGVALGPSAFDAS-HAHFGSDLAPTPDPDSDSSELLWPLLLLYPANGQSDVVRSVAERDTVGAHLAVVFPEGGPPPPWDAAAYEYRCSRLEAYARLGAARAFRDEADCADEVKASCGASLTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPRVRALRGLDTPEAAEKARAEVKQRARSADFDPNKARWLHVHPKCTVSQLLTHPEHVAAGGMVTLHVYARGSEAHAQFLRYNAPRIRELEP 1611
            GN+RFKR + N MYF+HA   YTE +++  + E+T ++  +   +L+NRA ANL +KNYG            S R+ CDE+L L PG+                         VKC +RK                             L +++  C    + A +  AA               +    A GV LGPS FD S H    + L    D   D   ++WP+LLLYP  GQSD++++  + D +  HLA  FPE GPP PWD + +EYRCS L  Y  L          D   E +    A ++                                                  A E +R   ++ A +A       RW  VHP CT+ ++L+  +HV AG   TL ++ +  ++H  FLR +  RI  L+P
Sbjct:   88 GNDRFKRGKKNAMYFRHAQQAYTEGLRNVRLGEETPELTAMVVALLSNRAMANLALKNYG------------SCRKDCDEALALSPGH-------------------------VKCLYRKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLKIKKECGRALKAAEDATAALNREKEERLERLAAVWDECEAAGVKLGPSGFDESNHEQRNAFLPMADDEHGDKGGVIWPVLLLYPQYGQSDLIQAFRDADMLAEHLAAAFPEEGPPAPWDTS-FEYRCSELVIYLPLRPVEPSPSVFDWVAEFEKMEAAKVSG-------------------------------------------------AEEMSRRSKERAAATAAAAARPQRWARVHPGCTLLRILSFEDHVVAGATPTLLLFPKDGQSHKDFLRDSGGRIFTLDP 440          
BLAST of jgi.p|Trimin1|353594 vs. uniprot
Match: A0A507C9A7_9FUNG (Wheel domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C9A7_9FUNG)

HSP 1 Score: 94.0 bits (232), Expect = 3.410e-17
Identity = 86/289 (29.76%), Postives = 124/289 (42.91%), Query Frame = 1
Query:  289 HEGNERFKRTRLNKMYFKHAALFYTEAIKHAVMAEQTADMVRLRATVLANRAAANLGIKNYGXXXXXXXXXXXXSVRRHCDESLRLQPGNSXXXXXXNVNVXXXXXXXXXXXXXXVKCYFRKAKALEGLKQYDEAVDCCVEGLEIDPAS----KELTELRTRCAAEARDAAERAAAAXXXVRAXCXXXXXXFRAAAARGVALGPSAFDASHAHFGSDLAPTPDPDSDSSELLWPLLLLYPANGQSDVVRSVAERDTVGAHLAVVFPEGGPPPPWDAAAYEYRCSRLEAY 1143
            ++GNE FK  R     +K A +FY+  + H        D + L  T+L NRAAA++ + NY              V   C  +L+L P N                         VK ++R A+A   L++++EAVDCC  GLEIDP +    +EL  + T+   EA    E   A    ++A         +A   R +  G     A+  H           D  ++ L  P+L LYP   QSD + +  E DT G H+  VF +   PPPWDA   EY   +L+ Y
Sbjct:   74 NQGNEAFKERR-----YKDARVFYSRGLDHKC------DDIDLNTTLLVNRAAAHIELGNY------------RQVLLDCAAALKLSPKN-------------------------VKAFYRSARACTALERFEEAVDCCERGLEIDPTNDALKRELEVIETK-RGEAVKHQEAKRAQQLEIQAQDQALSDALKARNIRSIETGSGIHPAAEDHHILL-------DPATNTLSIPVLFLYPEYSQSDFIAAFNENDTFGEHIHTVFDD---PPPWDAKK-EYLPDKLDVY 302          
BLAST of jgi.p|Trimin1|353594 vs. uniprot
Match: A0A1V9YFH9_9STRA (Wheel domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YFH9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 8.830e-16
Identity = 98/320 (30.63%), Postives = 136/320 (42.50%), Query Frame = 1
Query:  289 HEGNERFKR-TRLNKMYFKHAALFYTEAIKHAVMA---------------EQTADMVRLRATVLANRAAANLGIKNYGXXXXXXXXXXXXSVRRHCDESLRLQPGNSXXXXXXNVNVXXXXXXXXXXXXXXVKCYFRKAKALEGLKQYDEAVDCCVEGLEIDPASKELTELRT---RCAAEAR-----DA--AERAAAAXXXVRAXCXXXXXXFRAAAARGVALGPSAFDASHAHFGSDLAPTPDPDSDSSELLWPLLLLYPANGQSDVVRSVAERDTVGAHLAVVFPEGGPPPPWDAAAYEYRCSRLEAYARLGAARAF 1170
            ++GN+ F    + NK Y+ +A   Y++A+ + + A               ++   M  L AT+L NRAAA+L +KNYG            S R     +L+  P N                         +K  +R AKA   LK+ ++ +  C  GL IDP +KEL  LR    R   E R     DA  A++A A     R  C          A RGV +G    D +      D     D D +   + WP+LLLY   GQSD ++S  ERD    HLA +FPE GP   WD   ++Y  S+L  YA      AF
Sbjct:   64 NKGNKMFADGKKFNKNYYSYALKEYSDALAYGLKALASPTPAEELAKMDIDEPIVMTTLMATILTNRAAAHLALKNYG------------SCRSDAARALKYDPKN-------------------------LKAIYRGAKASSLLKKPEDTLRYCAVGLAIDPNNKELLALRVDGDRILEEQRVQRELDAFKAKKAHAMTDKFRKLC----------ALRGVRVGRGVLDDARV---KDFEGKADLDEEGV-MCWPVLLLYDEYGQSDFIQSFGERDMFIEHLANMFPEEGPFCFWDQR-HDYVASQLVVYAAADVVPAF 331          
BLAST of jgi.p|Trimin1|353594 vs. uniprot
Match: A0A024GLS2_9STRA (Wheel domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GLS2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.960e-14
Identity = 85/317 (26.81%), Postives = 142/317 (44.79%), Query Frame = 1
Query:  292 EGNERFKRTRLNKM-YFKHAALFYTEAIKHAVMA-----EQTA---DMVRLRATVLANRAAANLGIKNYGXXXXXXXXXXXXSVRRHCDESLRLQPGNSXXXXXXNVNVXXXXXXXXXXXXXXVKCYFRKAKALEGLKQYDEAVDCCVEGLEIDPASKELTEL---------RTRCAAEARDAA-ERAAAAXXXVRAXCXXXXXXFRAAAARGVALGPSAFDASHAHFGSDLAPTPDPDSDSSELLWPLLLLYPANGQSDVVRSVAERDTVGAHLAVVFPEGGPPPPWDAAAYEYRCSRLEAYARLGAARAFRDEAD 1185
            +GNE F+  + + + Y++ A  +Y++AI + + A     EQ A   ++  L A + +NR+A +L +KNYG                 C     +  G                          +K YFR AKA + L++  + +  C+EGL+IDP+SK+L +L         + +   + +D   ++  +     R+ C           AR + +G S F+        +LAP    ++++++++WP+L LY     SD+V +  E DT   HLA +FPEGGP   WD     Y+ S L  Y R   +  F  E D
Sbjct:   64 KGNEMFQTAKKHNLNYYRDALQYYSKAIAYGLEALKSTPEQRAPSYNITALMAQIYSNRSAVHLALKNYGS----------------CRSDAAVAIGYDCKH---------------------IKSYFRGAKASQKLQKPHDTLRYCMEGLQIDPSSKQLQQLEKEARLLLQKIQSEMDQKDREHQQRRSQVARYRSWCV----------ARRIRVGRSLFEDQRVRQ-YELAP--HVENETNDMVWPVLFLYDEYQTSDLVEAFGEHDTFVEHLANMFPEGGPYCEWDIEE-SYQASNLLLYVRANESIPFHTEED 329          
BLAST of jgi.p|Trimin1|353594 vs. uniprot
Match: A0A1W0A4K1_9STRA (Wheel domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A4K1_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.160e-13
Identity = 91/320 (28.44%), Postives = 133/320 (41.56%), Query Frame = 1
Query:  289 HEGNERFKRTRLNKMYFKHAALFYTEAIKHA-----------VMAEQTAD----MVRLRATVLANRAAANLGIKNYGXXXXXXXXXXXXSVRRHCDESLRLQPGNSXXXXXXNVNVXXXXXXXXXXXXXXVKCYFRKAKALEGLKQYDEAVDCCVEGLEIDPASKELTELRT---RCAAEARDA-------AERAAAAXXXVRAXCXXXXXXFRAAAARGVALGPSAFDASHAHFGSDLAPTPDPDSDSSELLWPLLLLYPANGQSDVVRSVAERDTVGAHLAVVFPEGGPPPPWDAAAYEYRCSRLEAYARLGAARAFR 1173
            ++GN+ F   + NK Y+ +A   YT+A  +            V+A+   D    M +L AT+L+NRAAA+L +KNYG            S R     +L+  P N                         +K  +R AKA   LK+ ++ +  C  GL IDP +KEL  LR    R   E R         A++  A     R  C            R + +G +  D +      D     D D +   + WP+L LY   GQSD ++  +E+D    HLA +FPE GP   WD    +Y  S+L+ Y       AF+
Sbjct:   64 NKGNKMFSDGKKNKNYYGYAIKEYTDAFTYGLKALAEPTDPDVLAKMDLDEPIVMDKLMATILSNRAAAHLSLKNYG------------SCRSDAARALKYDPKN-------------------------IKAIYRGAKASSLLKKPEDTLRYCSVGLTIDPTNKELLALRKDGDRILEEQRVQRELDEFKAKKKYAMTEKYRKLCTM----------RNIRVGRAVIDDARV---KDFEGKADLDEEGV-MGWPVLFLYDEYGQSDFIQCFSEQDMFIEHLANMFPEDGPFCFWDKR-QDYVASKLQIYVAADVVPAFK 331          
BLAST of jgi.p|Trimin1|353594 vs. uniprot
Match: A0A168KTU1_ABSGL (Wheel domain-containing protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168KTU1_ABSGL)

HSP 1 Score: 77.4 bits (189), Expect = 1.180e-11
Identity = 75/274 (27.37%), Postives = 112/274 (40.88%), Query Frame = 1
Query:  289 HEGNERFKRTRLNKMYFKHAALFYTEAIKHAVMAEQTADMVRLRATVLANRAAANLGIKNYGXXXXXXXXXXXXSVRRHCDESLRLQPGNSXXXXXXNVNVXXXXXXXXXXXXXXVKCYFRKAKALEGLKQYDEAVDCCVEGLEIDPASKELTELRTRCAAEARDAAERAAAAXXXVRAXCXXXXXXFRAAAARGVALG---PSAFDASHAHFGSDLAPTPDPDSDSSELLWPLLLLYPANGQSDVVRSVAERDTVGAHLAVVFPEGGPPPPWD 1101
            ++GN+ FK     K+ ++ A  FYT AI         +D   + A   ANRAA NL + NYG             V R C + L L P N                         VK  +R A+ L  L + DEA DCCV  L +DP +  + +L+ +      D  +RAAA    ++           A   R + +     + +DA+   +          D+DS  + WP+  LYP + +SD ++   E +T   HL V+      P PWD
Sbjct:   84 NQGNDCFKA---GKLKYQDAVSFYTRAID-----TDCSDQALMEACY-ANRAAVNLELGNYG------------KVLRDCAKCLELNPSN-------------------------VKALYRSARGLFQLDRPDEAYDCCVHCLAVDPDNIPVQQLQAKIKKRQDDLKQRAAAKAERLQKEQQAKQQKSDALERRRITINVQDKAMYDAAAIQY----------DADSDTVTWPVFFLYPEHKESDYIQQFDENNTFQDHLDVMLEN---PAPWD 298          
BLAST of jgi.p|Trimin1|353594 vs. uniprot
Match: A0A0F4ZEU7_9PEZI (Wheel domain-containing protein n=1 Tax=Thielaviopsis punctulata TaxID=72032 RepID=A0A0F4ZEU7_9PEZI)

HSP 1 Score: 75.5 bits (184), Expect = 6.250e-11
Identity = 70/248 (28.23%), Postives = 103/248 (41.53%), Query Frame = 1
Query:  400 ADMVRLRATVLANRAAANLGIKNYGXXXXXXXXXXXXSVRRHCDESLRLQPGNSXXXXXXNVNVXXXXXXXXXXXXXXVKCYFRKAKALEGLKQYDEAVDCCVEGLEIDPASKELTELRTRCAAEARDAAERAAAAXXXVRAXCXXXXXXFRAAAARGVALGPSAFDASHAHFGSDLAPTPDPDSDSSELLWPLLLLYPANGQSDVVRSVAERDTVGAHLAVVFPEGGPPPPWDAAAYEYRCSRLEAY 1143
            AD   +  ++ ANRAA NL ++N+             +    C  +LRL P N                         VKC++R AKAL  + + D+A D    GL +DPA+  L   +    A     AE+     XX             A AARG+       +      G+ +   PD D  +S L++P LLLYP + +SD ++  +E D + AHL  +FP      PWD     Y  + +E Y
Sbjct:  142 ADQRAMLESLYANRAACNLELRNF------------RACWTDCTGALRLNPRN-------------------------VKCWYRSAKALLAVDRLDDAADAAARGLAVDPANAALQSTQAAVVARRAAIAEKERREQXXXDTQTRRRELVRTALAARGIRT--RVTEKPPPMEGAAVRLLPDEDDPTSSLVFPTLLLYPTDYESDFIKEWSELDALDAHLGYIFPL-----PWDKDG-NYTLANVECY 344          
BLAST of jgi.p|Trimin1|353594 vs. uniprot
Match: A0A7S2AVY6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AVY6_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 8.540e-11
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 1
Query: 1423 ADFDPNKARWLHVHPKCTVSQLLTHPEHVAAGGMVTLHVYARGSEAHAQFLRYNAPRIRELEP 1611
            AD  P+   W+ +HP CT+  L+ +PEHV AGG++TLH+Y + SEAH  F++     I+EL P
Sbjct:   59 ADQHPDDQTWVKIHPACTMGDLIKYPEHVLAGGVLTLHMYPKNSEAHRNFVKACKAGIKELMP 121          
BLAST of jgi.p|Trimin1|353594 vs. uniprot
Match: W9YKM2_9EURO (Wheel domain-containing protein n=1 Tax=Capronia coronata CBS 617.96 TaxID=1182541 RepID=W9YKM2_9EURO)

HSP 1 Score: 74.3 bits (181), Expect = 1.440e-10
Identity = 72/250 (28.80%), Postives = 106/250 (42.40%), Query Frame = 1
Query:  409 VRLRATVLANRAAANLGIKNYGXXXXXXXXXXXXSVRRHCDESLRLQPGNSXXXXXXNVNVXXXXXXXXXXXXXXVKCYFRKAKALEGLKQYDEAVDCCVEGLEIDPAS----KELTELRTRCAA-EARDAAERAAAAXXXVRAXCXXXXXXFRAAAARGVALGPSAFDASHAHFGSDLAPTPDPDSDSSELLWPLLLLYPANGQSDVVRSVAERDTVGAHLAVVFPEGGPPPPWDAAAYEYRCSRLEAY 1143
            + L   +  NRA  NL +KNY             S    C  +LR+ P N                         VK ++R A AL  L +  EA+D    G++IDP +    K L ++RTR  A E +D   +A                  R     G    P+  DA        +  +PDP S +S+L +P++LLYP + QSD++++ AE+DT+  HL+ + P      PWD    EYR   +E Y
Sbjct:  145 IALEEQLYTNRALCNLELKNY------------RSTTLDCAAALRINPTN-------------------------VKAHYRSAAALLALDKVLEALDVASRGIKIDPENGALKKLLDQIRTRAKAKEEQDRRRQAELRRRQQEKATLDAALRARKIQLHGSKHSPNLEDAV-------IRLSPDPLSPTSQLEFPVMLLYPMHNQSDLIKAWAEKDTINQHLSYILPL-----PWDGK-NEYRMDTVECY 344          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353594 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z6T6_9STRA0.000e+0100.00Wheel domain-containing protein n=1 Tax=Tribonema ... [more]
D7FKE3_ECTSI3.020e-4027.95Wheel domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A507C9A7_9FUNG3.410e-1729.76Wheel domain-containing protein n=1 Tax=Synchytriu... [more]
A0A1V9YFH9_9STRA8.830e-1630.63Wheel domain-containing protein n=1 Tax=Achlya hyp... [more]
A0A024GLS2_9STRA4.960e-1426.81Wheel domain-containing protein n=1 Tax=Albugo can... [more]
A0A1W0A4K1_9STRA2.160e-1328.44Wheel domain-containing protein n=1 Tax=Thraustoth... [more]
A0A168KTU1_ABSGL1.180e-1127.37Wheel domain-containing protein n=1 Tax=Absidia gl... [more]
A0A0F4ZEU7_9PEZI6.250e-1128.23Wheel domain-containing protein n=1 Tax=Thielaviop... [more]
A0A7S2AVY6_9STRA8.540e-1146.03Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
W9YKM2_9EURO1.440e-1028.80Wheel domain-containing protein n=1 Tax=Capronia c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_172contigContig_172:109130..112627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353594|estExt_Genemark1.C_Ctg_1720017
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
KEGG ModuleM00177
KEGG Pathwayko03010,map03010
KEGG koko:K02993
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0008150,GO:0009987,GO:0030544,GO:0031072,GO:0032991,GO:0043021,GO:0043022,GO:0044424,GO:0044464,GO:0044877,GO:0051879
Preferred nameCNS1
Descriptionheat shock protein binding
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0457@1|root,KOG0551@2759|Eukaryota
Evalue5.74e-41
Seed ortholog2880.D7FKE3
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-05_005900.1
TranscriptId353916
TrackFilteredModels1
ProteinId353594
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353594gene_15801Tribonema minus UTEX_B_3156 geneContig_172 109130..112627 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353594Trimin1|353594|estExt_Genemark1.C_Ctg_1720017Tribonema minus UTEX_B_3156 polypeptideContig_172 109130..112594 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15801_1exon_15801_1Tribonema minus UTEX_B_3156 exonContig_172 109130..109416 +
exon_15801_2exon_15801_2Tribonema minus UTEX_B_3156 exonContig_172 109897..110085 +
exon_15801_3exon_15801_3Tribonema minus UTEX_B_3156 exonContig_172 110173..110208 +
exon_15801_4exon_15801_4Tribonema minus UTEX_B_3156 exonContig_172 110640..110685 +
exon_15801_5exon_15801_5Tribonema minus UTEX_B_3156 exonContig_172 110788..110816 +
exon_15801_6exon_15801_6Tribonema minus UTEX_B_3156 exonContig_172 110902..111052 +
exon_15801_7exon_15801_7Tribonema minus UTEX_B_3156 exonContig_172 111561..112025 +
exon_15801_8exon_15801_8Tribonema minus UTEX_B_3156 exonContig_172 112114..112251 +
exon_15801_9exon_15801_9Tribonema minus UTEX_B_3156 exonContig_172 112322..112627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15801CDS_15801Tribonema minus UTEX_B_3156 CDSContig_172 109130..109416 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15801UTR3_15801Tribonema minus UTEX_B_3156 three_prime_UTRContig_172 112595..112627 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15801 ID=mRNA_15801|Name=jgi.p|Trimin1|353594|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1647bp|location=Sequence derived from alignment at Contig_172:109130..112627+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCTACATACCGCACAGTCGCGCTCGCGCTGCACTGGATGGAAGC
GCAACGCCGCACGGTGGCGCTGCGCCGCGGAAGCGCGAGCGACACGCGCG
ATCGATCGGCGCAACGCGACGCGACGAGTGCCCCTCCAGGGCCGCCGCGC
CTCCACAGGGTCCGCTGGCGCGACGCACCGCGGCTGCGCGTGTCGTGTGC
GACGCACGGGGGCGCGCACACGGGGACGGCGCGTGAGTCGCGGAAAGCGC
GTACCGGTGTGACCATGCGCGGCATCGGCGCGCCGCCGCACGAGGGCAAC
GAGCGCTTCAAGCGCACGCGGCTCAACAAGATGTACTTCAAGCACGCGGC
GCTGTTCTACACGGAGGCCATCAAGCACGCGGTCATGGCAGAGCAGACGG
CAGACATGGTGCGGCTGCGCGCGACGGTGTTGGCCAACAGGGCCGCGGCG
AATCTCGGGATAAAGAACTACGGCAGGGCCGCGGCGAACCTGGGCATAAA
GTCCTACGGCAGCGTCAGGCGTCACTGCGACGAGAGCCTGCGCCTGCAGC
CCGGCAACAGCCTGCGCCTGAAGCCCGGTAACGTCAATGTGAGGCGCGAC
TGCGACGAGAGCCTGCGCCTGCAGCCCGGCAACGTCAAGTGCTACTTCCG
CAAGGCCAAGGCGCTGGAGGGGTTGAAGCAGTACGATGAGGCCGTAGACT
GTTGTGTGGAGGGATTGGAAATTGACCCGGCATCAAAGGAGCTGACGGAG
CTGCGCACGCGCTGCGCGGCGGAGGCGCGCGACGCCGCGGAGCGCGCGGC
GGCGGCGGCGGCGGCGGTGCGCGCGGCGTGCGACGCGGCGGCGCGCGCGT
TCCGCGCCGCCGCCGCGCGCGGCGTCGCGCTCGGCCCGAGCGCCTTCGAC
GCGAGCCACGCGCACTTCGGCTCGGACCTCGCGCCAACTCCCGACCCCGA
CTCCGACTCGTCCGAGCTGCTGTGGCCGCTGCTGCTGCTGTACCCTGCGA
ACGGCCAGAGCGACGTCGTGCGCTCGGTAGCGGAGCGCGATACGGTTGGC
GCGCATCTCGCCGTTGTTTTCCCCGAGGGCGGGCCGCCGCCGCCGTGGGA
CGCCGCCGCGTACGAGTACCGCTGCTCGCGGCTCGAGGCGTACGCGCGCC
TCGGCGCGGCGCGCGCGTTCCGCGACGAGGCGGACTGCGCCGACGAGGTC
AAGGCGTCATGTGGCGCATCGTTGACCTCAAGCGCTGCCGCAGCAGCACT
CCAACGCGCGCTGTCTGACGCCCTCCCTCCTCTCCTGCTGCTGCTGCCGC
TGCCGCCGCCATCGCCGCCGCCGCCGCTACTGCTGCCGCCCCGCGTGCGC
GCGCTGCGCGGCCTGGACACGCCGGAGGCGGCCGAAAAAGCGCGTGCCGA
GGTCAAGCAGCGTGCGCGGAGCGCTGACTTTGATCCCAACAAGGCGCGCT
GGCTGCACGTGCACCCCAAGTGCACCGTGTCGCAGCTGCTGACGCACCCG
GAGCACGTGGCGGCAGGGGGGATGGTGACGCTCCACGTCTACGCGCGCGG
CTCGGAGGCACACGCGCAGTTTCTGCGTTATAACGCGCCGCGGATACGCG
AGCTGGAGCCATGACATGGGGCGTAATCAAATTGGCATCAAGTGTGA
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protein sequence of jgi.p|Trimin1|353594

>Trimin1|353594|estExt_Genemark1.C_Ctg_1720017 ID=Trimin1|353594|estExt_Genemark1.C_Ctg_1720017|Name=jgi.p|Trimin1|353594|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=538bp
MSPTYRTVALALHWMEAQRRTVALRRGSASDTRDRSAQRDATSAPPGPPR
LHRVRWRDAPRLRVSCATHGGAHTGTARESRKARTGVTMRGIGAPPHEGN
ERFKRTRLNKMYFKHAALFYTEAIKHAVMAEQTADMVRLRATVLANRAAA
NLGIKNYGRAAANLGIKSYGSVRRHCDESLRLQPGNSLRLKPGNVNVRRD
CDESLRLQPGNVKCYFRKAKALEGLKQYDEAVDCCVEGLEIDPASKELTE
LRTRCAAEARDAAERAAAAAAAVRAACDAAARAFRAAAARGVALGPSAFD
ASHAHFGSDLAPTPDPDSDSSELLWPLLLLYPANGQSDVVRSVAERDTVG
AHLAVVFPEGGPPPPWDAAAYEYRCSRLEAYARLGAARAFRDEADCADEV
KASCGASLTSSAAAAALQRALSDALPPLLLLLPLPPPSPPPPLLLPPRVR
ALRGLDTPEAAEKARAEVKQRARSADFDPNKARWLHVHPKCTVSQLLTHP
EHVAAGGMVTLHVYARGSEAHAQFLRYNAPRIRELEP*
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mRNA from alignment at Contig_172:109130..112627+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15801 ID=mRNA_15801|Name=jgi.p|Trimin1|353594|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3498bp|location=Sequence derived from alignment at Contig_172:109130..112627+ (Tribonema minus UTEX_B_3156 )
ATGTCGCCTACATACCGCACAGTCGCGCTCGCGCTGCACTGGATGGAAGC GCAACGCCGCACGGTGGCGCTGCGCCGCGGAAGCGCGAGCGACACGCGCG ATCGATCGGCGCAACGCGACGCGACGAGTGCCCCTCCAGGGCCGCCGCGC CTCCACAGGGTCCGCTGGCGCGACGCACCGCGGCTGCGCGTGTCGTGTGC GACGCACGGGGGCGCGCACACGGGGACGGCGCGTGAGTCGCGGAAAGCGC GTACCGGTGTGACCATGCGCGGCATCGGCGCGCCGCCGTGCGCGCGACTG GCGCATGAGGGACGGTGGCAAGCGAACGTAGTCGAGAGCGCACACAGCTG TCGGTGGGGGGGGGGGGTCGCGGCCCGTGCTGCGCGACAGGACACGCTTG TGGCGGTCATCGTCGGTGTGAGCGCAGCTGTGGCCGCGGCCGGGTTCACT CGGGTGGTCACTATTATCTGCGGCAGTGCATGTGAGTTGGCAGTAGGCAT GTGTCGCTCGCGCGGTAGCGGCTCAGAGGCCGCGCCGTGCCGTGCTGTGC CGTGTTCAACCCCTGTGCCAGCAGCATGAGGCCGGATTGCCGCAGCTCTG CAACTGCCACACGCGCTGCAGCATCGACGACAGAGTTATTTGGTGTTTGC GTCGTGAAACACGCGCGGGCTTGCGCTCCGATGCCCTACATGTTAAGTAC CCTTGGTGCTGAAGAGCGCTGCAGCAACTGACCGCGCGCGCACTGCCACC CCCCCTCACCCCCATAGGCACGAGGGCAACGAGCGCTTCAAGCGCACGCG GCTCAACAAGATGTACTTCAAGCACGCGGCGCTGTTCTACACGGAGGCCA TCAAGCACGCGGTCATGGCAGAGCAGACGGCAGACATGGTGCGGCTGCGC GCGACGGTGTTGGCCAACAGGGCCGCGGCGAATCTCGGGATAAAGAACTA CGGCAGGTGAGTAGTAAGAGAAGCATATACGCATACTTCAGAAGCATGAA CTTACGAAGCGTATGTTATGCGCGCGACCGTGCTGGCCAGCAGGGCCGCG GCGAACCTGGGCATAAAGTCCTACGGCAGGTGAGTAACAAGTGCGTGAAG CAGGAGCGCATAGGTATGTCCTGATCCTGTGAGAACAACCTGCTATCGCT TTCCAACGCGCGCGTGTTGGTCCGCACTGCAGGAGGAGAAGGGCAGGCAC GGCACGCTCCTTGGCGGGAAGCAGAGCCGAGTTGACAACTGGCGGCAGCG CGGCACGTCTTGTTGGTTGTGTGACCCTCATGCTGTGTCAACTTCAATTG ATCCAGCACCAACTTCAACTGGTCAAACGTGAAACAGCGCTCAACAGGCT GTTACCATGTGCCACGCAGTGCAGCGCGACTGCGACGAGAGCCTGCAGCT TCACCACGGCAACGTCAAGTGCTATAAAAGTTCAACTCATGCAGTGCCAA GTACTCCATCACTTAGTGAAACTCAAACAGATTTTTTGCGTGTGCTGTGC GGCTGCGCAGCGTCAGGCGTCACTGCGACGAGAGCCTGCGCCTGCAGCCC GGCAACGTGAAGTGCTAGATACAACTTCAACTCATGCGGTGCCAACTTCA AAACAGGCTTCACTCGCATGTTATGCTGTCGTGCAACGTGCGGCGCGCAT GCGACGAGAGCCTGCGCCTGAAGCCCGGTAACGTCAAGTGCTAGATAAAC CTCAATTTTATGCAGTGCCAACTTCAACACTTTGAAAACAACCTTCTGCT CGTGTGCCGTGCGGCTGCGCAGTGTGAGGCGCGACTGCGACGAGAGCCTG CGCCTGCAGCCCGGCAACGTCAAGTGCTACTTCCGCAAGGCCAAGGCGCT GGAGGGGTTGAAGCAGTACGATGAGGCCGTAGACTGTTGTGTGGAGGGAT TGGAAATTGACCCGGCATCAAAGGTATGCGCACTTGTGCTTGCTGCAAAG TATAGCCCTCCCTCGCGTATGCTGAATGTGCACACCCCCGGTCTAATCCA AGCAACATGCTATTGCATACGAAAGTATGTTTCTTCAGATATGTGATACC AATACTGTGCACTTTCGGCATAGGCGATATGCTCAAAGTGCAAACAGATT GATGGAAGCGCCCGTGCTTAATCTGCAATGCGCATGCACCAGGCGTCAAC GGAGCGCTGTGCATGCGCGCTCTCGGCGCGCCTCACACACAGCGCCCTGC GCAGGTGCAGACGACGGTCCCTCACCTGCACAGGGCGCGCGCCTCGCTCC GCCGCCGCCGCTGCCAACACACGCGCTGCGACCTGCGCACGCGCCACGCG GCAGAATCGCGCGGCCTGCCTATCTCTTGTGCGAACTCGAGCAACGAACA GCGAACGGTGCCGCGCTGCTCTGACGAGACTCTCATCACATGCTGCCGTC ATGCGCTCCCCGCCGCCGCTGCGCGCCGCAGGAGCTGACGGAGCTGCGCA CGCGCTGCGCGGCGGAGGCGCGCGACGCCGCGGAGCGCGCGGCGGCGGCG GCGGCGGCGGTGCGCGCGGCGTGCGACGCGGCGGCGCGCGCGTTCCGCGC CGCCGCCGCGCGCGGCGTCGCGCTCGGCCCGAGCGCCTTCGACGCGAGCC ACGCGCACTTCGGCTCGGACCTCGCGCCAACTCCCGACCCCGACTCCGAC TCGTCCGAGCTGCTGTGGCCGCTGCTGCTGCTGTACCCTGCGAACGGCCA GAGCGACGTCGTGCGCTCGGTAGCGGAGCGCGATACGGTTGGCGCGCATC TCGCCGTTGTTTTCCCCGAGGGCGGGCCGCCGCCGCCGTGGGACGCCGCC GCGTACGAGTACCGCTGCTCGCGGCTCGAGGCGTACGCGCGCCTCGGCGC GGCGCGCGCGTTCCGCGACGAGGCGGACTGCGCCGACGAGGTCAAGGTGA GCGCGGGGGGAGAGTCACATCCGCGCATGCCCTTGAACTTCAGTGCGATG TGTGTGTGAGGTCATCTGGGCTTGCTGCGCGCAGGCGTCATGTGGCGCAT CGTTGACCTCAAGCGCTGCCGCAGCAGCACTCCAACGCGCGCTGTCTGAC GCCCTCCCTCCTCTCCTGCTGCTGCTGCCGCTGCCGCCGCCATCGCCGCC GCCGCCGCTACTGCTGCCGCCCGTCCGCCGCCGCGCGCCCCTCCGTCGCA CTTGACATTTCTTCTACTTCGTCCGACCTTGTCGAAAATCAGCGCGTGCG CGCGCTGCGCGGCCTGGACACGCCGGAGGCGGCCGAAAAAGCGCGTGCCG AGGTCAAGCAGCGTGCGCGGAGCGCTGACTTTGATCCCAACAAGGCGCGC TGGCTGCACGTGCACCCCAAGTGCACCGTGTCGCAGCTGCTGACGCACCC GGAGCACGTGGCGGCAGGGGGGATGGTGACGCTCCACGTCTACGCGCGCG GCTCGGAGGCACACGCGCAGTTTCTGCGTTATAACGCGCCGCGGATACGC GAGCTGGAGCCATGACATGGGGCGTAATCAAATTGGCATCAAGTGTGA
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Coding sequence (CDS) from alignment at Contig_172:109130..112627+

>mRNA_15801 ID=mRNA_15801|Name=jgi.p|Trimin1|353594|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1614bp|location=Sequence derived from alignment at Contig_172:109130..112627+ (Tribonema minus UTEX_B_3156 )
ATGTCGCCTACATACCGCACAGTCGCGCTCGCGCTGCACTGGATGGAAGC
GCAACGCCGCACGGTGGCGCTGCGCCGCGGAAGCGCGAGCGACACGCGCG
ATCGATCGGCGCAACGCGACGCGACGAGTGCCCCTCCAGGGCCGCCGCGC
CTCCACAGGGTCCGCTGGCGCGACGCACCGCGGCTGCGCGTGTCGTGTGC
GACGCACGGGGGCGCGCACACGGGGACGGCGCGTGAGTCGCGGAAAGCGC
GTACCGGTGTGACCATGCGCGGCATCGGCGCGCCGCCGCACGAGGGCAAC
GAGCGCTTCAAGCGCACGCGGCTCAACAAGATGTACTTCAAGCACGCGGC
GCTGTTCTACACGGAGGCCATCAAGCACGCGGTCATGGCAGAGCAGACGG
CAGACATGGTGCGGCTGCGCGCGACGGTGTTGGCCAACAGGGCCGCGGCG
AATCTCGGGATAAAGAACTACGGCAGGGCCGCGGCGAACCTGGGCATAAA
GTCCTACGGCAGCGTCAGGCGTCACTGCGACGAGAGCCTGCGCCTGCAGC
CCGGCAACAGCCTGCGCCTGAAGCCCGGTAACGTCAATGTGAGGCGCGAC
TGCGACGAGAGCCTGCGCCTGCAGCCCGGCAACGTCAAGTGCTACTTCCG
CAAGGCCAAGGCGCTGGAGGGGTTGAAGCAGTACGATGAGGCCGTAGACT
GTTGTGTGGAGGGATTGGAAATTGACCCGGCATCAAAGGAGCTGACGGAG
CTGCGCACGCGCTGCGCGGCGGAGGCGCGCGACGCCGCGGAGCGCGCGGC
GGCGGCGGCGGCGGCGGTGCGCGCGGCGTGCGACGCGGCGGCGCGCGCGT
TCCGCGCCGCCGCCGCGCGCGGCGTCGCGCTCGGCCCGAGCGCCTTCGAC
GCGAGCCACGCGCACTTCGGCTCGGACCTCGCGCCAACTCCCGACCCCGA
CTCCGACTCGTCCGAGCTGCTGTGGCCGCTGCTGCTGCTGTACCCTGCGA
ACGGCCAGAGCGACGTCGTGCGCTCGGTAGCGGAGCGCGATACGGTTGGC
GCGCATCTCGCCGTTGTTTTCCCCGAGGGCGGGCCGCCGCCGCCGTGGGA
CGCCGCCGCGTACGAGTACCGCTGCTCGCGGCTCGAGGCGTACGCGCGCC
TCGGCGCGGCGCGCGCGTTCCGCGACGAGGCGGACTGCGCCGACGAGGTC
AAGGCGTCATGTGGCGCATCGTTGACCTCAAGCGCTGCCGCAGCAGCACT
CCAACGCGCGCTGTCTGACGCCCTCCCTCCTCTCCTGCTGCTGCTGCCGC
TGCCGCCGCCATCGCCGCCGCCGCCGCTACTGCTGCCGCCCCGCGTGCGC
GCGCTGCGCGGCCTGGACACGCCGGAGGCGGCCGAAAAAGCGCGTGCCGA
GGTCAAGCAGCGTGCGCGGAGCGCTGACTTTGATCCCAACAAGGCGCGCT
GGCTGCACGTGCACCCCAAGTGCACCGTGTCGCAGCTGCTGACGCACCCG
GAGCACGTGGCGGCAGGGGGGATGGTGACGCTCCACGTCTACGCGCGCGG
CTCGGAGGCACACGCGCAGTTTCTGCGTTATAACGCGCCGCGGATACGCG
AGCTGGAGCCATGA
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