mRNA_15793 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Match: A0A836CJP2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJP2_9STRA) HSP 1 Score: 519 bits (1336), Expect = 2.020e-184 Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 2
Query: 38 MTSHFDWCPDFELAEADAEQQRHVFDELQRRDDWLLAKRPWLLPGPNLWSAELAAAATEAANLAAEREAMALVLSDISPSISTGVRTLSFILDVMGTRLLEVTEAADSEGVARPSGMLSVFVTTGSAAVETPERLGSALRCGIDTLALANSCAAQEAAGASGSVQVVQRLQQLSMRVSHQAMRGAIRARRTNLLFELPALAAERSLPLTLDAWAQAASAVIGAGRDVAQQKALLIWLSQRVRPWPVWWRTFLCYAAAEAGHLAILQYLMHDD 853
MTSHFDWCPDFELAEADAEQQRHVFDELQRRDDWLLAKRPWLLPGPNLWSAELAAAATEAANLAAEREAMALVLSDISPSISTGVRTLSFILDVMGTRLLEVTEAADSEGVARPSGMLSVFVTTGSAAVETPERLGSALRCGIDTLALANSCAAQEAAGASGSVQVVQRLQQLSMRVSHQAMRGAIRARRTNLLFELPALAAERSLPLTLDAWAQAASAVIGAGRDVAQQKALLIWLSQRVRPWPVWWRTFLCYAAAEAGHLAILQYLMHDD
Sbjct: 1 MTSHFDWCPDFELAEADAEQQRHVFDELQRRDDWLLAKRPWLLPGPNLWSAELAAAATEAANLAAEREAMALVLSDISPSISTGVRTLSFILDVMGTRLLEVTEAADSEGVARPSGMLSVFVTTGSAAVETPERLGSALRCGIDTLALANSCAAQEAAGASGSVQVVQRLQQLSMRVSHQAMRGAIRARRTNLLFELPALAAERSLPLTLDAWAQAASAVIGAGRDVAQQKALLIWLSQRVRPWPVWWRTFLCYAAAEAGHLAILQYLMHDD 272
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Match: A0A835ZEP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEP5_9STRA) HSP 1 Score: 205 bits (522), Expect = 1.250e-59 Identity = 127/247 (51.42%), Postives = 153/247 (61.94%), Query Frame = 2
Query: 224 LAAEREAMALVLSDISPSISTGVRTLSFILDVMGTRLLEVTEAADS------EGVARPSGMLSVFVTTGSAAVETPERLGSALRCGIDTLALANSCAAQEAAGASGSVQVVQRLQQLSMRVSH----QAMRGAIRARRTNLLFELPALAAERSLPLTLDAWAQAASAVIGAGRDVAQQKALLIWLSQRVRPWPVWWRTFLCYAAAEAGHLAILQYLMHDD*-EAVSGPLIRDMSAVDFESAEWTGVP 931
LAAEREAM LVLSDISPS GV L++ L+ MG RLLE+ A S AR G V VT+GSA VETP RL AL G D AL SC Q AAG SGS++V+ RL+QL M VS Q + GA RARRT +L+ LPALA E + W A V+ + D +QKA+LIWLSQ+VRPWPVW+ T LC+ AAE G LA L++LMH D + + GP I+D+S VD S EW P
Sbjct: 3 LAAEREAMLLVLSDISPSSKDGVTILAYTLEAMGARLLELVPVARSWRTAYMSVTARQQGAAWVCVTSGSAVVETPARLEMALARGADVPALVKSCDVQRAAGTSGSMEVIHRLRQLGMVVSDGVVLQVLIGATRARRTGVLYRLPALALESGEQVDHQTWTYAGICVLRSAYDEEEQKAVLIWLSQQVRPWPVWYCTRLCHIAAENGRLAALKFLMHKDRGQVLFGPFIQDLSVVDLSSPEWVNAP 249
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Match: A0A835YZ94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ94_9STRA) HSP 1 Score: 186 bits (472), Expect = 4.000e-51 Identity = 127/297 (42.76%), Postives = 157/297 (52.86%), Query Frame = 2
Query: 224 LAAEREAMALVLSDISPSISTGVRTLSFILDVMGTRLLEVTEAADSEGV--------------------------------------------------------ARPSGMLSVFVTTGSAAVETPERLGSALRCGIDTLALANSCAAQEAAGASGSVQVVQRLQQLSMRVSH----QAMRGAIRARRTNLLFELPALAAERSLPLTLDAWAQAASAVIGAGRDVAQQKALLIWLSQRVRPWPVWWRTFLCYAAAEAGHLAILQYLMHDD*-EAVSGPLIRDMSAVDFESAEWTGVP 931
LAAEREAM LVLSDISPS + GV L++ L+ MG RLLEVTEA +S+ AR G V VT+GSA VETP RL AL G D AL SC Q AAG SGS++V+ RL+QL M VS Q + GA ARRT +L+ LPALA E + W A V+ + D +QKA+LIWLSQ+VRPWPVW+ T LC+ AAE G LA L++LMH D + + G L++D+S +DF S E P
Sbjct: 3 LAAEREAMLLVLSDISPSSNGGVTILAYTLEAMGARLLEVTEATESDDARACAPSRSEVVGDGPRRAVLANPQLLESVLSFVGRGHRLYLVPVARSWRTAYMSVTARQQGAAWVCVTSGSAVVETPARLEMALARGADVPALVKSCDVQRAAGTSGSMEVIHRLRQLGMVVSDGVVLQVLIGATCARRTGVLYRLPALALESGEQVDHQTWTYAGICVLRSAYDEEEQKAVLIWLSQQVRPWPVWYCTCLCHTAAENGRLASLKFLMHKDCGQVLFGSLVQDLSVIDFSSPERADAP 299
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Match: A0A835ZI44_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI44_9STRA) HSP 1 Score: 172 bits (437), Expect = 4.600e-46 Identity = 123/298 (41.28%), Postives = 155/298 (52.01%), Query Frame = 2
Query: 212 EAANLAAEREAMALVLSDISPSISTGVRTLSFILDVMGTRLLEVTEAADSEGV--------------------------------------------------------ARPSGMLSVFVTTGSAAVETPERLGSALRCGIDTLALANSCAAQEAAGASGSVQVVQRLQQLSMRVSHQAMRGAIRARRTNLLFELPALAAERSLPLTLDAWAQAASAVIGAGRDVAQQKALLIWLSQRVRPWPVWWRTFLCYAAAEAGHLAILQYLMHDD*-EAVSGPLIRDMSAVDFESAEWTGVPH 934
EAA+LAAEREAM LVL DI PS +GVR+L+ + MGTRL EV EA S+ A+ G SV VT G+AAVE PERL AL CGI+ L + Q AAGASGS++VV+RL L M +S A+ GA ARRT ++ L ALA +TL W D +Q+A LIWLSQ++RPWPVW+ T LC+ AAE G LA L++L+H+D +A+ GPLI D+SAV+ EWT H
Sbjct: 2 EAAHLAAEREAMLLVLGDICPSADSGVRSLTCTVQAMGTRLQEVMEAVSSDDARANAGSPSEAEGDGPRGAVLANPQLLASIINFMKCGHWLYLTPVARSWRTAYMSVTAQREGAPSVCVTWGTAAVEAPERLAMALACGINVQRLTRAYFVQNAAGASGSMEVVRRLHGLGMPISDGALIGA--ARRTGVMNRLLALALGSGEQVTLSTWLFVGLCTFSDAYD-GEQRAALIWLSQQMRPWPVWFCTVLCHTAAEKGQLAALKFLIHEDYGQALFGPLIWDLSAVNMRGPEWTAGRH 296
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Match: A0A836CP87_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP87_9STRA) HSP 1 Score: 168 bits (425), Expect = 1.270e-45 Identity = 106/228 (46.49%), Postives = 145/228 (63.60%), Query Frame = 2
Query: 368 VARPSGMLSVFVTTGSAAVETPERLGSALRCGIDTL--ALANSCAAQEAAGASGSVQVVQRLQQLSMRVSHQAMRGAIRARRTNLLFELPALAAERSLPLTLDAWAQAASAVIGAGRDVAQQKALLIWLSQRVRPWPVWWRTFLCYAAAEAGHLAILQYLMHDD*-EAVSGPLIRDMSAVDFESAEWTGVPHGVVEMFRDPEWAEFLIPR----VTGAISLLDAAAMG 1030
+A+ G+ V T+ AAVE+P+RL AL CGI +L SC +AAGASGS++VV+RL L +RVS + A RARRT +L+ LPAL E +TL W ++++GA D + KA+L+WLSQ+VRPWPVW+ T LC+ AA G LA L++LMHDD +A+ GPLIRD+SAVD+ S EWT P + F+ P +A P ++L+DAAA+G
Sbjct: 24 MAQQEGVPWVCATSPPAAVESPQRLEMALACGITVHVPSLHYSCNVFDAAGASGSMEVVRRLHGLGLRVSC-VLPSAARARRTGILYRLPALVQESGDEVTLHTWVLVQASILGAAYDDNELKAVLVWLSQQVRPWPVWYCTLLCHTAARKGRLAALKFLMHDDHGQALFGPLIRDLSAVDWSSPEWTKAPK---QHFKWPSFAFDDEPEFHQYANALLTLMDAAAVG 247
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Match: A0A836CDJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDJ7_9STRA) HSP 1 Score: 159 bits (402), Expect = 7.430e-42 Identity = 93/188 (49.47%), Postives = 119/188 (63.30%), Query Frame = 2
Query: 371 ARPSGMLSVFVTTGSAAVETPERLGSALRCGIDTLALANSCAAQEAAGASGSVQVVQRLQQLSMRVSHQAMRGAIRARRTNLLFELPALAAERSLPLTLDAWAQAASAVIGAGRDVAQQKALLIWLSQRVRPWPVWWRTFLCYAAAEAGHLAILQYLMHDD*-EAVSGPLIRDMSAVDFESAEWTGVP 931
AR G+ V VT+GSAAVETPER AL CGI AL NS AQ AAGASGS++V++ L +L + S + A RARRT +L+ P LA ER++ + + W + + QQ+A LIWLSQ+VRP PVW+ + LC AAE G LA L++LMHDD +A+ GPLI D +DFES EW P
Sbjct: 5 ARQQGVPWVCVTSGSAAVETPERQEMALACGISVPALTNSSDAQCAAGASGSMEVIRHLHRLGVPTSDAVLFSAARARRTGILYRFPVLARERNVQVKMSTWMAVYERFLSDSYNDEQQRAALIWLSQQVRPLPVWYCSSLCVTAAENGQLAALKFLMHDDHGQALFGPLIPDSLVIDFESPEWINAP 192
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Match: A0A835YUZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ6_9STRA) HSP 1 Score: 152 bits (383), Expect = 6.430e-39 Identity = 99/220 (45.00%), Postives = 129/220 (58.64%), Query Frame = 2
Query: 374 RPSGMLSVFVTTGSAAVETPERLGSALRCGIDTLALANSCAAQEAAGASGSVQVVQRLQQLSMRVSHQAMRGAIRARRTNLLFELPALAAERSLPLTLDAWAQAASAVIGAGRDVAQQKALLIWLSQRVRPWPVWWRTFLCYAAAEAGHLAILQYLMHDD*-EAVSGPLIRDMSAVDFESAEWTGVPHGVVEMFRDPEWAEFLIPRVTGAISLLDAAAMG 1030
R + V VT G AAVETPERL AL GID L ++ +AQEAAGASGS++V+ RL L M +S A+ GA AR L+ L LA R++ + L+ W VI D Q+ A L+WLS++VRPWPVW+ T+LC++AA G A L+Y M+ D +AV GPL+RD+S VDF EW P FR W P +SL+D AA+G
Sbjct: 132 RQQSVPCVCVTVGPAAVETPERLEMALEHGIDVPILTSTYSAQEAAGASGSMEVILRLCHLGMPISCAALLGAACARHIGTLYRLCTLAQRRNVLVRLETWTALHERVIHCSHDDEQRLAALVWLSRQVRPWPVWFCTYLCHSAANGGRQAALKYFMNKDRGQAVYGPLVRDLSVVDFGCLEWRDAP----ATFR---WCLGSRP----LLSLMDEAAIG 340
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Match: A0A835YNS1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNS1_9STRA) HSP 1 Score: 121 bits (304), Expect = 1.770e-27 Identity = 86/221 (38.91%), Postives = 110/221 (49.77%), Query Frame = 2
Query: 371 ARPSGMLSVFVTTGSAAVETPERLGSALRCGIDTLALANSCAAQEAAGASGSVQVVQRLQQLSMRVSHQAMRGAIRARRTNLLFELPALAAERSLPLTLDAWAQAASAVIGAGRDVAQQKALLIWLSQRVRPWPVWWRTFLCYAAAEAGHLAILQYLMHDD*-EAVSGPLIRDMSAVDFESAEWTGVPHGVVEMFRDPEWAEFLIPRVTGAISLLDAAAMG 1030
AR G+ V VT +A E P RL L CG+ A S +EAAGASGS +V++R++QL M + +AAE +TL W ++ D AQQ+A LIWLSQ RPWPVW+ T LC+ AAE G LA L++LM DD +A+ GPLI D S VD EW P F RV +L+D AA+G
Sbjct: 77 ARRQGVPWVCVTAAAAVAEAPARLEMGLACGVRLPARGGSFDVEEAAGASGSTEVIRRMRQLGMSAA--------------------GVAAECGEHMTLQTWIDLVPHILCDAYDGAQQEAALIWLSQHARPWPVWYCTHLCFTAAENGQLAALKFLMRDDRGQALFGPLIPDPSVVDTAGPEWRHAPG-----------YSFEHNRVGYQFTLMDKAAVG 266
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Match: A0A836CJH5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJH5_9STRA) HSP 1 Score: 101 bits (251), Expect = 1.600e-22 Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2
Query: 887 MSAVDFESAEWTGVPHGVVEMFRDPEWAEFLIPRVTGAISLLDAAAMG 1030
MSAVDFESAEWTGVPHGVVEMFRDPEWAEFLIPRVTGAISLLDAAAMG
Sbjct: 1 MSAVDFESAEWTGVPHGVVEMFRDPEWAEFLIPRVTGAISLLDAAAMG 48
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Match: A0A836CD13_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD13_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 8.890e-13 Identity = 56/112 (50.00%), Postives = 69/112 (61.61%), Query Frame = 2
Query: 320 MGTRLLEVTEAADSEGVARPSGMLSVFVTTGSAAVETPERLGSALRCGIDTLALANSCAAQEAAGASGSVQVVQRLQQLSMRVSHQAMRGAIRARRTNLLFELPALAAERSL 655
MG+RL EVTEAA+ + +P +L ETPERL AL CGI AL S +AQ AAGASGS++V+QRL Q M +S+ + GA ARRT L+ LPALA E L
Sbjct: 1 MGSRLAEVTEAANIDH--KPETVL-----------ETPERLEMALACGISVPAL-TSYSAQHAAGASGSMEVIQRLLQRGMPISNAVLVGAASARRTGTLYRLPALALEHGL 98 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15793 ID=mRNA_15793|Name=jgi.p|Trimin1|353588|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1031bp|location=Sequence derived from alignment at Contig_172:61826..63144+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGAGAGACAGAGAGAGAGAGAGCAGCGTCTAGCTGCCATGACGTCTCACTback to top protein sequence of jgi.p|Trimin1|353588 >Trimin1|353588|estExt_Genemark1.C_Ctg_1720009 ID=Trimin1|353588|estExt_Genemark1.C_Ctg_1720009|Name=jgi.p|Trimin1|353588|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=273bp MTSHFDWCPDFELAEADAEQQRHVFDELQRRDDWLLAKRPWLLPGPNLWSback to top mRNA from alignment at Contig_172:61826..63144+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15793 ID=mRNA_15793|Name=jgi.p|Trimin1|353588|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1319bp|location=Sequence derived from alignment at Contig_172:61826..63144+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_172:61826..63144+ >mRNA_15793 ID=mRNA_15793|Name=jgi.p|Trimin1|353588|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=819bp|location=Sequence derived from alignment at Contig_172:61826..63144+ (Tribonema minus UTEX_B_3156 )back to top |