mRNA_15776 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|354025 vs. uniprot
Match: A0A836CJN4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJN4_9STRA) HSP 1 Score: 174 bits (440), Expect = 4.350e-53 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1
Query: 1 MSLARELAERIMAGCARGAAANDAALLRARTRGAAAEHCRRCYRCNKSXXXXXXXXXAAGGLLYNYTCGKDSIAVATAEAAXXXXXXXXXXXXXXXXAAQQTARASEAPFEPAQPLASLPKSR 369
MSLARELAERIMAGCARGAAANDAALLRARTRGAAAEHCRRCYRCNKSXXXXXXXXXAAGGLLYNYTCGKDSIAVATAEAAXXXXXXXXXXXXXXXXAAQQTARASEAPFEPAQPLASLPKSR
Sbjct: 1 MSLARELAERIMAGCARGAAANDAALLRARTRGAAAEHCRRCYRCNKSXXXXXXXXXAAGGLLYNYTCGKDSIAVATAEAAXXXXXXXXXXXXXXXXAAQQTARASEAPFEPAQPLASLPKSR 123
BLAST of jgi.p|Trimin1|354025 vs. uniprot
Match: A0A835ZC92_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC92_9STRA) HSP 1 Score: 2362 bits (6122), Expect = 0.000e+0 Identity = 1400/1400 (100.00%), Postives = 1400/1400 (100.00%), Query Frame = 1
Query: 1 MIRNHADVELPFTSTGAKSRRGSRALDFPSTAKTFQQKNASVAGQDGMRAAAYKLFTRLDYDINGRITAYELERFLCLALEMPLQPTFDITFTGQDLHLELARVDGRLEVQGWGEDMVGYTQSGSPQLCKGLELLKVQGITLPHTKDPTRSLAGVLRGLAPGKPVTVTFAAPPHIVSPADCWLDLRISGSGXXXXXXXXRNVAAVLPTGAYPTREAFASAVQAAARAAAAPTLDDLTCECETTAARXXXXXXXXXXXRVSGAAVFVLSTRVTPFQVAWATGANAERCCQAQFGAGVAAPPADTDADTRHVLRAATVASYMGPNAPVLALVEGAARKLRRLMRRMGADTVQHSALYPSAPGAVTHALRICNCLLRLYTRSPPPADAAAARSLAQNLCAEFAPPGCPPGTAPALDFEAFLPLFAARLSPAALPSLVQLVAGRYADAAEAARREDARAAAAAARVRRGALLAARQARKAAQRAQTAAQLGSGEYGRGKTGLLVRMVARPLARAFARTAPPXXXXLPRAQAVGAMLRVPAAELEQRLAALHETRDVARALRRAQTRRAQFVGRRLAQAQRDSSAREQREKEAAAAAQLRALVSMDLLPSAAEXXXXXXXXXXXXLPEEPDDVIDLGLTAGLALSAGAAPPQCAAEALHPAFTGYVVRRIGALPPWDPATVSPVYFGALSRAHAATRRQSAAAIIRVAKDAVRQGQRRHNAGAQHVWQVFPCAPINKGQVRQDRFAFARAYDRGEVVHPSLFGLSTLRLATAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDERDLRYVRALAPGDACPTCLLRKAGCPRCWEYPAGWAARDFAYEGPAGSSGAAAAAATLELLAGAGSAAPPERLPLHTQLTTESAIRLYRSIEQSFIRFLVKALPCGPVTALACEARWPVHALYAMLRAASAGGAARDAFLFLPTTAGAFALDCAERAETDVSLGVHTALLPLARYNLTANRSTVCLLLSPFFSTVKTEESIRQYLSQELVIKEKYSTATVQHLATCPAHPEQDPVQRALVALLSSRAQLHAALHEDDRHRALQARRELISEAARIRAAVEAEQARCPRAYTPWRAANTEPEGAQPPQHAAAAAPAVVGGPGPVMMLADAPQPDPPPRLPLRRRLLPACAAAPLQRMRVATARDALALTQKIAARCARVSVDWVGTVELAAPITLGVSATLNVTGASAAAVGRAPSAVIGGSGGGSGGAAVRLFELQDGSALTLRDVVLRGASGDIGGAMRAGQGSTVRLTRVVAHNNSATDGGGALYLGLLATAEITNSSFDTNMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIFTHGQLTVRHSSFANNTGLRLRSNDVTTPAACAHPKRMRTARRAA 4200
MIRNHADVELPFTSTGAKSRRGSRALDFPSTAKTFQQKNASVAGQDGMRAAAYKLFTRLDYDINGRITAYELERFLCLALEMPLQPTFDITFTGQDLHLELARVDGRLEVQGWGEDMVGYTQSGSPQLCKGLELLKVQGITLPHTKDPTRSLAGVLRGLAPGKPVTVTFAAPPHIVSPADCWLDLRISGSGXXXXXXXXRNVAAVLPTGAYPTREAFASAVQAAARAAAAPTLDDLTCECETTAARXXXXXXXXXXXRVSGAAVFVLSTRVTPFQVAWATGANAERCCQAQFGAGVAAPPADTDADTRHVLRAATVASYMGPNAPVLALVEGAARKLRRLMRRMGADTVQHSALYPSAPGAVTHALRICNCLLRLYTRSPPPADAAAARSLAQNLCAEFAPPGCPPGTAPALDFEAFLPLFAARLSPAALPSLVQLVAGRYADAAEAARREDARAAAAAARVRRGALLAARQARKAAQRAQTAAQLGSGEYGRGKTGLLVRMVARPLARAFARTAPPXXXXLPRAQAVGAMLRVPAAELEQRLAALHETRDVARALRRAQTRRAQFVGRRLAQAQRDSSAREQREKEAAAAAQLRALVSMDLLPSAAEXXXXXXXXXXXXLPEEPDDVIDLGLTAGLALSAGAAPPQCAAEALHPAFTGYVVRRIGALPPWDPATVSPVYFGALSRAHAATRRQSAAAIIRVAKDAVRQGQRRHNAGAQHVWQVFPCAPINKGQVRQDRFAFARAYDRGEVVHPSLFGLSTLRLATAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDERDLRYVRALAPGDACPTCLLRKAGCPRCWEYPAGWAARDFAYEGPAGSSGAAAAAATLELLAGAGSAAPPERLPLHTQLTTESAIRLYRSIEQSFIRFLVKALPCGPVTALACEARWPVHALYAMLRAASAGGAARDAFLFLPTTAGAFALDCAERAETDVSLGVHTALLPLARYNLTANRSTVCLLLSPFFSTVKTEESIRQYLSQELVIKEKYSTATVQHLATCPAHPEQDPVQRALVALLSSRAQLHAALHEDDRHRALQARRELISEAARIRAAVEAEQARCPRAYTPWRAANTEPEGAQPPQHAAAAAPAVVGGPGPVMMLADAPQPDPPPRLPLRRRLLPACAAAPLQRMRVATARDALALTQKIAARCARVSVDWVGTVELAAPITLGVSATLNVTGASAAAVGRAPSAVIGGSGGGSGGAAVRLFELQDGSALTLRDVVLRGASGDIGGAMRAGQGSTVRLTRVVAHNNSATDGGGALYLGLLATAEITNSSFDTNMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIFTHGQLTVRHSSFANNTGLRLRSNDVTTPAACAHPKRMRTARRAA
Sbjct: 1 MIRNHADVELPFTSTGAKSRRGSRALDFPSTAKTFQQKNASVAGQDGMRAAAYKLFTRLDYDINGRITAYELERFLCLALEMPLQPTFDITFTGQDLHLELARVDGRLEVQGWGEDMVGYTQSGSPQLCKGLELLKVQGITLPHTKDPTRSLAGVLRGLAPGKPVTVTFAAPPHIVSPADCWLDLRISGSGXXXXXXXXRNVAAVLPTGAYPTREAFASAVQAAARAAAAPTLDDLTCECETTAARXXXXXXXXXXXRVSGAAVFVLSTRVTPFQVAWATGANAERCCQAQFGAGVAAPPADTDADTRHVLRAATVASYMGPNAPVLALVEGAARKLRRLMRRMGADTVQHSALYPSAPGAVTHALRICNCLLRLYTRSPPPADAAAARSLAQNLCAEFAPPGCPPGTAPALDFEAFLPLFAARLSPAALPSLVQLVAGRYADAAEAARREDARAAAAAARVRRGALLAARQARKAAQRAQTAAQLGSGEYGRGKTGLLVRMVARPLARAFARTAPPXXXXLPRAQAVGAMLRVPAAELEQRLAALHETRDVARALRRAQTRRAQFVGRRLAQAQRDSSAREQREKEAAAAAQLRALVSMDLLPSAAEXXXXXXXXXXXXLPEEPDDVIDLGLTAGLALSAGAAPPQCAAEALHPAFTGYVVRRIGALPPWDPATVSPVYFGALSRAHAATRRQSAAAIIRVAKDAVRQGQRRHNAGAQHVWQVFPCAPINKGQVRQDRFAFARAYDRGEVVHPSLFGLSTLRLATAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDERDLRYVRALAPGDACPTCLLRKAGCPRCWEYPAGWAARDFAYEGPAGSSGAAAAAATLELLAGAGSAAPPERLPLHTQLTTESAIRLYRSIEQSFIRFLVKALPCGPVTALACEARWPVHALYAMLRAASAGGAARDAFLFLPTTAGAFALDCAERAETDVSLGVHTALLPLARYNLTANRSTVCLLLSPFFSTVKTEESIRQYLSQELVIKEKYSTATVQHLATCPAHPEQDPVQRALVALLSSRAQLHAALHEDDRHRALQARRELISEAARIRAAVEAEQARCPRAYTPWRAANTEPEGAQPPQHAAAAAPAVVGGPGPVMMLADAPQPDPPPRLPLRRRLLPACAAAPLQRMRVATARDALALTQKIAARCARVSVDWVGTVELAAPITLGVSATLNVTGASAAAVGRAPSAVIGGSGGGSGGAAVRLFELQDGSALTLRDVVLRGASGDIGGAMRAGQGSTVRLTRVVAHNNSATDGGGALYLGLLATAEITNSSFDTNMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIFTHGQLTVRHSSFANNTGLRLRSNDVTTPAACAHPKRMRTARRAA 1400
BLAST of jgi.p|Trimin1|354025 vs. uniprot
Match: A0A836CJI1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI1_9STRA) HSP 1 Score: 180 bits (456), Expect = 6.270e-42 Identity = 148/229 (64.63%), Postives = 164/229 (71.62%), Query Frame = 1
Query: 3448 DPPPRLPLRRRL-LPACAAA--PLQRMRVATARDALALTQKIAARCARVSVDWVGTVELAAPITLGVSATLNVTGASAAAVGRAPSAVIGGSGGGSGGAAVRLFELQDGSALTLRDVVLRGASGDIGGAMRAGQGSTVRLTRVVAHNNSATDGGGALYLGLLATAEITNSSFDTNMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIFTHGQLTVRHSSFANNTGLR 4125
DP P PLR+ LP CA+ P++R+RVATA DA ALT+ IAA CARV VDW GTVEL PI LG ATL V GASAA VG APS AAVRLFEL++ SAL L+DVVLRG S D GGA+ AGQ S V LTRVVAH+N+ATDGGGALYL L+TAEITN SFD N XXXXXXXXXXXXXXXXXXXXXX I+THGQL VR FANNTG++
Sbjct: 24 DPHPHRPLRKLAPLPPCASPLPPVRRLRVATADDAAALTRAIAAPCARVYVDWFGTVELTEPIRLGARATLTVNGASAA-VGGAPSXXXXXXXX-XXXAAVRLFELRNNSALRLQDVVLRGGSADSGGAVWAGQDSKVWLTRVVAHSNNATDGGGALYLSPLSTAEITNCSFDFNXXXXXXXXXXXXXXXXXXXXXXXXNGTSQSAGAIYTHGQLIVRQGRFANNTGVQ 250
BLAST of jgi.p|Trimin1|354025 vs. uniprot
Match: A0A7S2MF12_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MF12_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 1.320e-17 Identity = 72/250 (28.80%), Postives = 117/250 (46.80%), Query Frame = 1
Query: 2476 LAPGDACPTCLLRKAGCPRCWEYPAGWAARDFAYEGPAGSSGAAAAAATLELLAGAGSAAPPERLPLHTQLTTESAIRLYRSIEQSFIRFLVKALPCGPVTALACEARWPVHALYAMLRAASAGGAARDAFLFLPTTAGAFALDCAERAETDVSLGVHTALLPLARYNLTANRSTVCLLLSPFFSTVKTEESIRQYLSQELVIKEKYSTATVQHL-ATCPAHPEQDPVQRALVALLSSRAQLHAALHEDD 3222
L P D CP CL+RK GCP CWE+P G+A D+ ++G G +L+ + +HT LTT A++ +R I S+ LVK +P GPV L V L+ + R+ S G A LF+PT G + LD + E++++L ++TA + L RY V +LL ++ + + +++ + + T + HL D +Q +L+ L + L + +DD
Sbjct: 137 LRPEDICPICLVRKPGCPFCWEFPKGFAPVDYEHKGKKGEH---------DLV--------DTKPKIHTDLTTVGALQTFRHINSSYTNVLVKTIPAGPVIELRVLPTDNVGYLHHLFRSKSEFGMHDQARLFIPTVNGIYCLDNDQVPESELTLALYTADIALQRYGFMGEAFPV-VLLHAMGEIGLFHDTFQHLIERQVHLPTQPKTDIIHHLEGLVEITIGNDALQESLLQLFEKQLTLDRKVAQDD 368
BLAST of jgi.p|Trimin1|354025 vs. uniprot
Match: A0A7S2RVH0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVH0_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 4.670e-11 Identity = 46/118 (38.98%), Postives = 68/118 (57.63%), Query Frame = 1
Query: 2674 LHTQLTTESAIRLYRSIEQSFIRFLVKALPCGPVTALACEARWPVHALYAMLRAASAGGA-ARDAFLFLPTTAGAFALDCAERAETDVSLGVHTALLPLARYNLTANRSTVCLLLSPF 3024
LHT LTT +AI +R I SF+ FL+K +P GPVT + ++ W V LY + ++S+ + + LFLPT AG F L + ET+ L AL+ L+ Y+++ S V LL P+
Sbjct: 219 LHTDLTTPAAIAYHRRIHNSFVTFLIKTVPAGPVTRVVLDSSWTVEQLYELFFSSSSVDLLSPTSTLFLPTCAGIFELVNVDEEETETQLENKRALMQLSEYSISTPGSLVALLHFPW 336 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354025 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
BLAST of jgi.p|Trimin1|354025 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15776 ID=mRNA_15776|Name=jgi.p|Trimin1|354025|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=526bp|location=Sequence derived from alignment at Contig_203:205698..206870+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTCGCTGGCGCGGGAGTTGGCGGAGCGCATCATGGCTGGGTGCGCGCGback to top protein sequence of jgi.p|Trimin1|354025 >Trimin1|354025|estExt_Genemark1.C_Ctg_2030032 ID=Trimin1|354025|estExt_Genemark1.C_Ctg_2030032|Name=jgi.p|Trimin1|354025|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=124bp MSLARELAERIMAGCARGAAANDAALLRARTRGAAAEHCRRCYRCNKSTGback to top mRNA from alignment at Contig_203:205698..206870+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15776 ID=mRNA_15776|Name=jgi.p|Trimin1|354025|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1173bp|location=Sequence derived from alignment at Contig_203:205698..206870+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_203:205698..206870+ >mRNA_15776 ID=mRNA_15776|Name=jgi.p|Trimin1|354025|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=372bp|location=Sequence derived from alignment at Contig_203:205698..206870+ (Tribonema minus UTEX_B_3156 )back to top |