mRNA_15774 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|179866
Unique NamemRNA_15774
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|179866 vs. uniprot
Match: A0A836CHN8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHN8_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.800e-23
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    1 PTFGEARGAPCTHCVHHKTPEMVRTRGAFCAGNNGTCDTQPK 126
            PTFGEARGAPCTHCVHHKTPEMVRTRGAFCAGNNGTCDTQPK
Sbjct:    1 PTFGEARGAPCTHCVHHKTPEMVRTRGAFCAGNNGTCDTQPK 42
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|179866 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CHN8_9STRA2.800e-23100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_203contigContig_203:192144..192722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|179866|e_gw1.203.16.1
Hectar predicted targeting categoryother localisation
TranscriptId180188
TrackFilteredModels1
ProteinId179866
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|179866gene_15774Tribonema minus UTEX_B_3156 geneContig_203 192144..192722 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15774_1exon_15774_1Tribonema minus UTEX_B_3156 exonContig_203 192144..192722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15774CDS_15774Tribonema minus UTEX_B_3156 CDSContig_203 192144..192722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|179866Trimin1|179866|e_gw1.203.16.1Tribonema minus UTEX_B_3156 polypeptideContig_203 192144..192722 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15774 ID=mRNA_15774|Name=jgi.p|Trimin1|179866|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=579bp|location=Sequence derived from alignment at Contig_203:192144..192722+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGACCTTCGGCGAGGCCAGGGGGGCGCCCTGCACGCACTGCGTCCACCA
CAAGACGCCGGAGATGGTGCGTACAAGGGGGGCGTTCTGCGCCGGCAACA
ACGGCACGTGCGATACGCAGCCGAAGTTCGGCGCGGCCAGGGGGGCGCCC
TGCACGCACTGCGTCCAGCACAAGACGCAGGAGATGGTGCGTGCGGCGGG
GCCGTTCTGCGCCGGCAACAACGGCACGTGCGATACGCAGCCGAAGTTCG
GCGCGGCCAGGGGGGCGCCCTGCACGCACTGCGTCCAGCACAAGACGCAG
GAGATGGTGCGTGCGGTGGGGCTGTTCTGCGCCGGCGACGACACGTGCCG
TGTCGAGCCGAGCTTCGGCGAGGCCAGGGGGGCGGCCCGCACGCACTGCG
TCCACCACAAGACGCAGGAGATGGTGCGTACAAGGGGGCCGTTCTGCGCC
GGCGACGACACATGCAGTAAGCGGCCGAGGTTTGCCGACGCCACGGGGGA
GCGCCCCAAGTACTGCGACAAGCACAAGGGCCCGGGCATGGTTAATGTTG
TGGACAAACCCCGCGCACGACGAAAATGA
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protein sequence of jgi.p|Trimin1|179866

>Trimin1|179866|e_gw1.203.16.1 ID=Trimin1|179866|e_gw1.203.16.1|Name=jgi.p|Trimin1|179866|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=193bp
PTFGEARGAPCTHCVHHKTPEMVRTRGAFCAGNNGTCDTQPKFGAARGAP
CTHCVQHKTQEMVRAAGPFCAGNNGTCDTQPKFGAARGAPCTHCVQHKTQ
EMVRAVGLFCAGDDTCRVEPSFGEARGAARTHCVHHKTQEMVRTRGPFCA
GDDTCSKRPRFADATGERPKYCDKHKGPGMVNVVDKPRARRK*
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mRNA from alignment at Contig_203:192144..192722+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15774 ID=mRNA_15774|Name=jgi.p|Trimin1|179866|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=579bp|location=Sequence derived from alignment at Contig_203:192144..192722+ (Tribonema minus UTEX_B_3156 )
CCGACCTTCGGCGAGGCCAGGGGGGCGCCCTGCACGCACTGCGTCCACCA
CAAGACGCCGGAGATGGTGCGTACAAGGGGGGCGTTCTGCGCCGGCAACA
ACGGCACGTGCGATACGCAGCCGAAGTTCGGCGCGGCCAGGGGGGCGCCC
TGCACGCACTGCGTCCAGCACAAGACGCAGGAGATGGTGCGTGCGGCGGG
GCCGTTCTGCGCCGGCAACAACGGCACGTGCGATACGCAGCCGAAGTTCG
GCGCGGCCAGGGGGGCGCCCTGCACGCACTGCGTCCAGCACAAGACGCAG
GAGATGGTGCGTGCGGTGGGGCTGTTCTGCGCCGGCGACGACACGTGCCG
TGTCGAGCCGAGCTTCGGCGAGGCCAGGGGGGCGGCCCGCACGCACTGCG
TCCACCACAAGACGCAGGAGATGGTGCGTACAAGGGGGCCGTTCTGCGCC
GGCGACGACACATGCAGTAAGCGGCCGAGGTTTGCCGACGCCACGGGGGA
GCGCCCCAAGTACTGCGACAAGCACAAGGGCCCGGGCATGGTTAATGTTG
TGGACAAACCCCGCGCACGACGAAAATGA
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Coding sequence (CDS) from alignment at Contig_203:192144..192722+

>mRNA_15774 ID=mRNA_15774|Name=jgi.p|Trimin1|179866|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=579bp|location=Sequence derived from alignment at Contig_203:192144..192722+ (Tribonema minus UTEX_B_3156 )
CCGACCTTCGGCGAGGCCAGGGGGGCGCCCTGCACGCACTGCGTCCACCA
CAAGACGCCGGAGATGGTGCGTACAAGGGGGGCGTTCTGCGCCGGCAACA
ACGGCACGTGCGATACGCAGCCGAAGTTCGGCGCGGCCAGGGGGGCGCCC
TGCACGCACTGCGTCCAGCACAAGACGCAGGAGATGGTGCGTGCGGCGGG
GCCGTTCTGCGCCGGCAACAACGGCACGTGCGATACGCAGCCGAAGTTCG
GCGCGGCCAGGGGGGCGCCCTGCACGCACTGCGTCCAGCACAAGACGCAG
GAGATGGTGCGTGCGGTGGGGCTGTTCTGCGCCGGCGACGACACGTGCCG
TGTCGAGCCGAGCTTCGGCGAGGCCAGGGGGGCGGCCCGCACGCACTGCG
TCCACCACAAGACGCAGGAGATGGTGCGTACAAGGGGGCCGTTCTGCGCC
GGCGACGACACATGCAGTAAGCGGCCGAGGTTTGCCGACGCCACGGGGGA
GCGCCCCAAGTACTGCGACAAGCACAAGGGCCCGGGCATGGTTAATGTTG
TGGACAAACCCCGCGCACGACGAAAATGA
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