mRNA_15699 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353674
Unique NamemRNA_15699
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|353674 vs. uniprot
Match: A0A835Z606_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z606_9STRA)

HSP 1 Score: 411 bits (1057), Expect = 1.810e-145
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 1 
Query:    1 MEVNREDEWAESGTGAVAHSYKDGNSTAVFRAAIQSNIEQDLASALKRLQKLVALDQRGQMQELRSPEGAGIMCWFAAAHPDLFLDSTNHSFVVPPYVLRWGVCGRAKFNGFDLVQFDTSVVQNGRDFTGAVTELRLRLGALRWPFDECMSEAKYFRYVELTGRVFVRPEDDVSAGRRELGSSYRDWGFELVAETTKTLHR 603
            MEVNREDEWAESGTGAVAHSYKDGNSTAVFRAAIQSNIEQDLASALKRLQKLVALDQRGQMQELRSPEGAGIMCWFAAAHPDLFLDSTNHSFVVPPYVLRWGVCGRAKFNGFDLVQFDTSVVQNGRDFTGAVTELRLRLGALRWPFDECMSEAKYFRYVELTGRVFVRPEDDVSAGRRELGSSYRDWGFELVAETTKTLHR
Sbjct:    1 MEVNREDEWAESGTGAVAHSYKDGNSTAVFRAAIQSNIEQDLASALKRLQKLVALDQRGQMQELRSPEGAGIMCWFAAAHPDLFLDSTNHSFVVPPYVLRWGVCGRAKFNGFDLVQFDTSVVQNGRDFTGAVTELRLRLGALRWPFDECMSEAKYFRYVELTGRVFVRPEDDVSAGRRELGSSYRDWGFELVAETTKTLHR 201
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BLAST of jgi.p|Trimin1|353674 vs. uniprot
Match: A0A835Z716_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z716_9STRA)

HSP 1 Score: 239 bits (609), Expect = 9.100e-78
Identity = 117/130 (90.00%), Postives = 118/130 (90.77%), Query Frame = 1 
Query:  106 SNIEQDLASALKRLQKLVALDQRGQMQELRSPEGAGIMCWFAAAHPDLFLDSTNHSFVVPPYVLRWGVCGRAKFNGFDLVQFDTSVVQNGRDFTGAVTELRLRLGALRWPFDECMSEAKYFRYVELTGRV 495
            SNIEQDLASALKRLQKLVALDQRGQMQELRSPEGAGIMCWFAAAHPDLFLD TNHSFVVPPYVLRWGVCGRAKFNG DLVQFDTSVVQNGRDF G VTELRLRLGALRW FD C+S AKYFR VE    V
Sbjct:   17 SNIEQDLASALKRLQKLVALDQRGQMQELRSPEGAGIMCWFAAAHPDLFLDPTNHSFVVPPYVLRWGVCGRAKFNGLDLVQFDTSVVQNGRDFIGTVTELRLRLGALRWLFDACVSNAKYFRLVETDADV 146
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BLAST of jgi.p|Trimin1|353674 vs. uniprot
Match: A0A835YTF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTF1_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.420e-60
Identity = 98/156 (62.82%), Postives = 119/156 (76.28%), Query Frame = 1 
Query:  106 SNIEQDLASALKRLQKLVALDQRGQMQELRSPEGAGIMCWFAAAHPDLFLDSTNHSFVVPPYVLRWGVCGRAKFNGFDLVQFDTSVVQNGRDFTGAVTELRLRLGALRWPFDECMSEAKYFRYVELTGRVFVRPEDDVSAGRRELGSSYRDWGFEL 573
            S  + +LA AL RL +L ALD++GQ+QELRS +GAGIMCWFA AHP+L+LD TN  F  PP++L+WG+CG+A+FNG    +FDT+VVQ+ RDF GAV ELRLRLGAL W F ECM +A YF  V L GRVFV  ++DVS GRREL  S  DWGFEL
Sbjct:  118 STSDPNLADALARLCRLEALDEQGQLQELRSDKGAGIMCWFATAHPNLYLDETNKVFTAPPFMLKWGLCGKAEFNGCYSARFDTAVVQHRRDFEGAVAELRLRLGALSWLF-ECMPDATYFYSVTLMGRVFVGHKNDVSEGRRELAWSLSDWGFEL 272
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BLAST of jgi.p|Trimin1|353674 vs. uniprot
Match: A0A836CPA1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPA1_9STRA)

HSP 1 Score: 154 bits (389), Expect = 7.470e-40
Identity = 83/161 (51.55%), Postives = 103/161 (63.98%), Query Frame = 1 
Query:  106 SNIEQDLASALKRLQKLVALDQRGQMQELRSPEGAGIMCWFAAAHPDLFLDSTNHSFVVPPYVLRWGVCGRAKFNGFD----LVQFDTSVVQNGRDFTGAVTELRLRLGALRWPFDECMSEAKYFRYVELTGRVFVRPEDDVSAGRRELGSSYRDWGFELV 576
            S  EQ LA AL+ L  LV LDQ+GQ+QELRS  GAGIMCW+AAAHP L+LD+ N  F+VPP  L W + G A F  +D      +FDT+VVQ GRD   AVTELRLRLGAL+W F  C+  +  ++ V L GR+FV     +S  +R       D GFEL+
Sbjct:  662 STSEQYLARALELLLNLVVLDQQGQVQELRSDSGAGIMCWYAAAHPQLYLDAANEDFLVPPISLLWMLPGSATFTLYDRRPVAARFDTAVVQKGRDLAAAVTELRLRLGALKWLFAACLPRSTPYQVVTLVGRIFVSRFTFIS--QRHSAPPLSDLGFELI 820
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BLAST of jgi.p|Trimin1|353674 vs. uniprot
Match: A0A835YV49_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV49_9STRA)

HSP 1 Score: 107 bits (267), Expect = 5.380e-25
Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:  337 DLVQFDTSVVQNGRDFTGAVTELRLRLGALRWPFDECMSEAKYFRYVELTGRVFVRPEDDVSAGRRELGSSYRDWGFELVAETTKTL 597
            +LV      +QNG +FTGAVTELRLR+GA++W FD C+SEA  F +V L GRVFVRPED++S+G  EL S+  +WGFELV E+   L
Sbjct:  155 NLVDDPEDPLQNGSNFTGAVTELRLRMGAIKWLFDNCVSEADLFAWVTLVGRVFVRPEDNISSGYPELSSTCAEWGFELVVESKALL 241
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BLAST of jgi.p|Trimin1|353674 vs. uniprot
Match: A0A835YUB2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUB2_9STRA)

HSP 1 Score: 101 bits (252), Expect = 9.380e-22
Identity = 64/158 (40.51%), Postives = 81/158 (51.27%), Query Frame = 1 
Query:  184 QELRSPEGAGIMCWFAAAHPDLFLDST----NHSFVVPPYVLRWGVCGRAKF-NGFDLVQFDTSVVQNGRDFTGAVTELRLRLGALRWPFDECMSEAKYFRY-----------------VELTGRVFVRPE--------DDVSAGRRELGSSYRDWGF 567
            QELRS +GAGIMCW+AAAHP L+LD      + + + PP  LRW + GRA         +FD +V+Q+GR +  AV EL LRLGAL+W F  C+  A                      V+LTGRVF+           D   A R+  G  YR WGF
Sbjct:  277 QELRSADGAGIMCWYAAAHPALYLDDAAAPCDDAPLAPPTALRWYMRGRADLARDGSAARFDAAVIQDGRRYDAAVQELGLRLGALKWLFAACVRPAAXXXXXXXXXXXXXXXXXXXXQVQLTGRVFMSERFVGRMHELDMAQAARQRDGQPYR-WGF 433
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353674 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835Z606_9STRA1.810e-145100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z716_9STRA9.100e-7890.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTF1_9STRA1.420e-6062.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CPA1_9STRA7.470e-4051.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YV49_9STRA5.380e-2557.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YUB2_9STRA9.380e-2240.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_177contigContig_177:263067..266337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353674|estExt_Genemark1.C_Ctg_1770030
Hectar predicted targeting categoryother localisation
TranscriptId353996
TrackFilteredModels1
ProteinId353674
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353674gene_15699Tribonema minus UTEX_B_3156 geneContig_177 263067..266337 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15699_1exon_15699_1Tribonema minus UTEX_B_3156 exonContig_177 263067..263173 +
exon_15699_2exon_15699_2Tribonema minus UTEX_B_3156 exonContig_177 265291..265369 +
exon_15699_3exon_15699_3Tribonema minus UTEX_B_3156 exonContig_177 265918..266337 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15699CDS_15699Tribonema minus UTEX_B_3156 CDSContig_177 263067..263173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353674Trimin1|353674|estExt_Genemark1.C_Ctg_1770030Tribonema minus UTEX_B_3156 polypeptideContig_177 263067..266337 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15699 ID=mRNA_15699|Name=jgi.p|Trimin1|353674|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=606bp|location=Sequence derived from alignment at Contig_177:263067..266337+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGTCAACCGCGAGGACGAATGGGCCGAAAGCGGAACAGGGGCCGT
GGCTCACTCCTATAAGGACGGGAACTCCACTGCCGTGTTTAGGGCCGCCA
TCCAGAGCAATATCGAGCAGGACTTGGCATCGGCATTGAAACGCCTGCAG
AAACTGGTGGCCCTTGACCAACGGGGCCAGATGCAGGAGCTGCGGAGCCC
GGAGGGCGCCGGCATCATGTGCTGGTTTGCCGCCGCGCACCCCGACCTGT
TCTTGGACTCGACGAACCATTCTTTTGTAGTGCCGCCTTATGTGCTACGC
TGGGGCGTGTGCGGAAGGGCAAAGTTCAATGGGTTTGATCTGGTGCAGTT
TGACACCTCCGTAGTGCAGAATGGCCGCGATTTTACTGGCGCTGTGACAG
AGCTGAGGCTGCGCCTGGGCGCGCTTCGATGGCCCTTCGATGAGTGCATG
TCCGAAGCCAAGTACTTCCGTTACGTGGAGCTCACAGGGCGGGTCTTTGT
GCGTCCTGAAGACGATGTGTCAGCAGGACGCCGCGAGCTGGGGTCTAGTT
ACAGAGACTGGGGATTCGAGCTGGTGGCGGAGACTACAAAAACGCTACAC
AGATAA
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protein sequence of jgi.p|Trimin1|353674

>Trimin1|353674|estExt_Genemark1.C_Ctg_1770030 ID=Trimin1|353674|estExt_Genemark1.C_Ctg_1770030|Name=jgi.p|Trimin1|353674|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=202bp
MEVNREDEWAESGTGAVAHSYKDGNSTAVFRAAIQSNIEQDLASALKRLQ
KLVALDQRGQMQELRSPEGAGIMCWFAAAHPDLFLDSTNHSFVVPPYVLR
WGVCGRAKFNGFDLVQFDTSVVQNGRDFTGAVTELRLRLGALRWPFDECM
SEAKYFRYVELTGRVFVRPEDDVSAGRRELGSSYRDWGFELVAETTKTLH
R*
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mRNA from alignment at Contig_177:263067..266337+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15699 ID=mRNA_15699|Name=jgi.p|Trimin1|353674|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3271bp|location=Sequence derived from alignment at Contig_177:263067..266337+ (Tribonema minus UTEX_B_3156 )
ATGGAGGTCAACCGCGAGGACGAATGGGCCGAAAGCGGAACAGGGGCCGT
GGCTCACTCCTATAAGGACGGGAACTCCACTGCCGTGTTTAGGGCCGCCA
TCCAGAGGTCGTTGGGCTATCGAGGTCCATCGAGGCTCACGCAGTAGGCG
ACATGGTGTAAATGTTCGTGGAATATTTGCAGAAGCGCCTAGGAGTGATC
GACATGGAGTTATGGCAACGCTTGGCGGATCGGGGGAACGAGCGGCTTGC
ACAGGAAGAAGTGGGCCTTAAACTGCTCCGCTGCATCAGCGCCAAGCTTC
AGGTGTGTAACAAGAGTTTGAATCAGACACCTGCAAACAGCGACCTCAGC
CCACAAACGGGTATATCGGTATGTACACGCCCAGCTGTGCATCTCATGCC
CTTCATAATACCAGTTGGCATCCACCATTGCCTCTGTATTTGCCAAGGCG
CAACTGGCACATGATGCATGTTAGTAATCTAACATGCACCCGATCATCTG
GCATGCGCCCTTTGATCATGCGCACCAGCAGCAGCAGCGCGGTATGTATG
GACATGCACCAAGAAGTGGTCTCACTGACATCATTATAGCAGGGTCATGA
TGAGTTGATGCCGCAGTGCCTGACTGCGGAGTTAGACTCCTTCCCAAAAC
AACACGGCATGGGGTGGTCCCTGGTTGCCCATGGGGTCCCCTGGTTGCTC
GACATAGCCCGAAGACTCCTTGGTGATATGAAGGTTGGGAGGACAAGAGG
GGAGGGCTGGCAACCACAAGGGTACATTCCAGACCACACCCCACCACACG
TACATATGCTGTACCAGCTACCATGCTACCGCAACATCCCCCCCCCCCCC
TGTCACAAGTGCCGCTTCCACCACCGGCAGGCAGCATTGCCCCGCGGGCA
ACTCAGCACTGCCACTGCCCCCACCGTCACTCCCCCCCCCCCCGCCACGC
CACCCACTTGTCTACTAGTACCCGTCTCCATCACCCTCGGGCTCCATCCA
CGGGTGCCGGGATGATGTCCTCCACGCCGCAGACCACGCACATGCCATGC
ATGCCCATGTTGGTGGCGCGCTGCCGAGGTCAATGTCTGCAATATTGCAA
AGTTGCTTTTCAGGGCATGAGACCTCAGCCAGCACAGCACAGAGCCTGCT
GCTGCTGCTGTTGGCTGGTCTAGGAGCTGCAGGCGATAGAATGCTACATA
CAGCCTGAGGACAAGCACCCACCTGATACGCGTGTGATGTGTGCTGACAG
CACGTTGACGGTACGTCGTCCAGCAACACCGCCCAGGACGAACCAGCAGT
AGTACCAGCAGGCAAATGCTACAGCAATGCAGCTGCAGCAATTGTCCTGT
GCTGCTGATGCCTTATATTCTCTCAGATTTGTCTGACTGGCACACGTCTC
AGGTCAACCTAGACCCTTTTGGGTATATTGGGGATGGCATGCATCGGTGA
TGCGCGCGCAGTAACGCTGCTTTGTCAGCTCGGCGGTAATCAACGACGAG
CCAAGGGGGGCCTTGAAATGCGCACACCGTTTCTGCAGCTCATTGCGCCT
CGTGTGATGGACCTACTTACGCAGCAGAACCTTCAAGATCTCCAGTTGGC
ACAGCGCCTTGCGGCAAGTACAACTGGCCTGCAAGCAAGCCCCCATATCG
GCCAACGGAATACCACTGCCCGGGCCAGGCGCAACCGGTGCAGAGGTAGC
ACTGCTCGCCATCTCTGACATCCGTACATACTGGTGTATATGGGGGCGGT
GCATGACCGCATATATATGCCGCTGAGCATTCATGGGCAAGAATACAGCA
CAAGCGTCATGCCAGCGCACATTGTTGAGATGTTCATGCCTGCAGACGAG
TGCACCAAAACATTTAAACATCAATACATCAATACATCGCTGCTCAACTC
GAGACACACTAGTGTGAAAAGGATCAGCAGGCAGCGCGGCAGCAGTGTGG
GAGCGCAAGAGATGTTCAAACACCGAGAACATATATTGGTATTCACAAGG
GTCAAGTGCACAGCAAGAGGGCACTGTAGTGCATGCATACATGTATATAT
GTATTGCCTAGAGAGGGTGAGGGTGAATCTGCACATGACTGACCTACGAA
TAACTCTAGCCACTCTTTGTCATCCGGTGCTTGTGCAGCACTGGCAGAAC
GGCTTTGTGGGCTGGTTCGATCAGCACGGACTTCTGGATCATGATGCTCT
GGCAAACTTCATCGCTGACCGCAGCAATATCGAGCAGGACTTGGCATCGG
CATTGAAACGCCTGCAGAAACTGGTGGCCCTTGACCAACGGGGCCAGATG
CAGGTGCATTTTCCAACAGATGAAAATATCAAAGGAAAAACTTACCTAGA
GAGGCGTTGCTGAGTGTATTCACAGTGTGGCATAGCCTGTCTTGGAGCGC
TGAACAGCCCATGTCCACTTGTCATGCGACTCGCATAGGCTTAGGCTTCC
GCGCAATATTTTTTTGCACGCCAACAACAGCAGCTCCAGCGTTTGATGGT
GGAAGACTTGAAAAACTGACATGTGAATGTGCGTTCTCGGTCGCTAGTAC
CTGTTGCCTTCATGATGAGGCGGCCACTTTTCAAAGATGTGTACTCTCGT
GTTCAAGCAGCAGAGTGGTTGCTCCAAAAGGGCATCTTCATGCCCCGAGT
CAATTCTGCAACTGCATGTGCCTAGGCTTCCTAACTTGTGTACTCAAAGC
AGTTGGCATCATCTGGCTTCTTCTCAGTCAGCAGGCTCGCTACGGGCGTA
CTTTGTATATGTACATTATTCACCTTCCTGCTTACACACCCTGCACCGCG
CCATCAACAGTCAACAGCGATCTGCTTTGATATTTCATTTTACGCGCACA
GGAGCTGCGGAGCCCGGAGGGCGCCGGCATCATGTGCTGGTTTGCCGCCG
CGCACCCCGACCTGTTCTTGGACTCGACGAACCATTCTTTTGTAGTGCCG
CCTTATGTGCTACGCTGGGGCGTGTGCGGAAGGGCAAAGTTCAATGGGTT
TGATCTGGTGCAGTTTGACACCTCCGTAGTGCAGAATGGCCGCGATTTTA
CTGGCGCTGTGACAGAGCTGAGGCTGCGCCTGGGCGCGCTTCGATGGCCC
TTCGATGAGTGCATGTCCGAAGCCAAGTACTTCCGTTACGTGGAGCTCAC
AGGGCGGGTCTTTGTGCGTCCTGAAGACGATGTGTCAGCAGGACGCCGCG
AGCTGGGGTCTAGTTACAGAGACTGGGGATTCGAGCTGGTGGCGGAGACT
ACAAAAACGCTACACAGATAA
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Coding sequence (CDS) from alignment at Contig_177:263067..266337+

>mRNA_15699 ID=mRNA_15699|Name=jgi.p|Trimin1|353674|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=606bp|location=Sequence derived from alignment at Contig_177:263067..266337+ (Tribonema minus UTEX_B_3156 )
ATGGAGGTCAACCGCGAGGACGAATGGGCCGAAAGCGGAACAGGGGCCGT
GGCTCACTCCTATAAGGACGGGAACTCCACTGCCGTGTTTAGGGCCGCCA
TCCAGAGCAATATCGAGCAGGACTTGGCATCGGCATTGAAACGCCTGCAG
AAACTGGTGGCCCTTGACCAACGGGGCCAGATGCAGGAGCTGCGGAGCCC
GGAGGGCGCCGGCATCATGTGCTGGTTTGCCGCCGCGCACCCCGACCTGT
TCTTGGACTCGACGAACCATTCTTTTGTAGTGCCGCCTTATGTGCTACGC
TGGGGCGTGTGCGGAAGGGCAAAGTTCAATGGGTTTGATCTGGTGCAGTT
TGACACCTCCGTAGTGCAGAATGGCCGCGATTTTACTGGCGCTGTGACAG
AGCTGAGGCTGCGCCTGGGCGCGCTTCGATGGCCCTTCGATGAGTGCATG
TCCGAAGCCAAGTACTTCCGTTACGTGGAGCTCACAGGGCGGGTCTTTGT
GCGTCCTGAAGACGATGTGTCAGCAGGACGCCGCGAGCTGGGGTCTAGTT
ACAGAGACTGGGGATTCGAGCTGGTGGCGGAGACTACAAAAACGCTACAC
AGATAA
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