mRNA_15697 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353673
Unique NamemRNA_15697
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|353673 vs. uniprot
Match: A0A835Z716_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z716_9STRA)

HSP 1 Score: 331 bits (849), Expect = 5.670e-115
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1 
Query:    1 MVQNLEPEPPPGCVQMSNIEQDLASALKRLQKLVALDQRGQMQELRSPEGAGIMCWFAAAHPDLFLDPTNHSFVVPPYVLRWGVCGRAKFNGLDLVQFDTSVVQNGRDFIGTVTELRLRLGALRWLFDACVSNAKYFRLVETDADVPRHISSSPDSAIAKSAAL 492
            MVQNLEPEPPPGCVQMSNIEQDLASALKRLQKLVALDQRGQMQELRSPEGAGIMCWFAAAHPDLFLDPTNHSFVVPPYVLRWGVCGRAKFNGLDLVQFDTSVVQNGRDFIGTVTELRLRLGALRWLFDACVSNAKYFRLVETDADVPRHISSSPDSAIAKSAAL
Sbjct:    1 MVQNLEPEPPPGCVQMSNIEQDLASALKRLQKLVALDQRGQMQELRSPEGAGIMCWFAAAHPDLFLDPTNHSFVVPPYVLRWGVCGRAKFNGLDLVQFDTSVVQNGRDFIGTVTELRLRLGALRWLFDACVSNAKYFRLVETDADVPRHISSSPDSAIAKSAAL 164
[Close]
BLAST of jgi.p|Trimin1|353673 vs. uniprot
Match: A0A835Z606_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z606_9STRA)

HSP 1 Score: 238 bits (608), Expect = 1.060e-77
Identity = 116/125 (92.80%), Postives = 117/125 (93.60%), Query Frame = 1 
Query:   49 SNIEQDLASALKRLQKLVALDQRGQMQELRSPEGAGIMCWFAAAHPDLFLDPTNHSFVVPPYVLRWGVCGRAKFNGLDLVQFDTSVVQNGRDFIGTVTELRLRLGALRWLFDACVSNAKYFRLVE 423
            SNIEQDLASALKRLQKLVALDQRGQMQELRSPEGAGIMCWFAAAHPDLFLD TNHSFVVPPYVLRWGVCGRAKFNG DLVQFDTSVVQNGRDF G VTELRLRLGALRW FD C+S AKYFR VE
Sbjct:   36 SNIEQDLASALKRLQKLVALDQRGQMQELRSPEGAGIMCWFAAAHPDLFLDSTNHSFVVPPYVLRWGVCGRAKFNGFDLVQFDTSVVQNGRDFTGAVTELRLRLGALRWPFDECMSEAKYFRYVE 160
[Close]
BLAST of jgi.p|Trimin1|353673 vs. uniprot
Match: A0A835YTF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTF1_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.730e-44
Identity = 74/121 (61.16%), Postives = 95/121 (78.51%), Query Frame = 1 
Query:   49 SNIEQDLASALKRLQKLVALDQRGQMQELRSPEGAGIMCWFAAAHPDLFLDPTNHSFVVPPYVLRWGVCGRAKFNGLDLVQFDTSVVQNGRDFIGTVTELRLRLGALRWLFDACVSNAKYF 411
            S  + +LA AL RL +L ALD++GQ+QELRS +GAGIMCWFA AHP+L+LD TN  F  PP++L+WG+CG+A+FNG    +FDT+VVQ+ RDF G V ELRLRLGAL WLF+ C+ +A YF
Sbjct:  118 STSDPNLADALARLCRLEALDEQGQLQELRSDKGAGIMCWFATAHPNLYLDETNKVFTAPPFMLKWGLCGKAEFNGCYSARFDTAVVQHRRDFEGAVAELRLRLGALSWLFE-CMPDATYF 237
[Close]
BLAST of jgi.p|Trimin1|353673 vs. uniprot
Match: A0A836CPA1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPA1_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.360e-34
Identity = 72/128 (56.25%), Postives = 87/128 (67.97%), Query Frame = 1 
Query:   49 SNIEQDLASALKRLQKLVALDQRGQMQELRSPEGAGIMCWFAAAHPDLFLDPTNHSFVVPPYVLRWGVCGRAKFNGLD----LVQFDTSVVQNGRDFIGTVTELRLRLGALRWLFDACVSNAKYFRLV 420
            S  EQ LA AL+ L  LV LDQ+GQ+QELRS  GAGIMCW+AAAHP L+LD  N  F+VPP  L W + G A F   D      +FDT+VVQ GRD    VTELRLRLGAL+WLF AC+  +  +++V
Sbjct:  662 STSEQYLARALELLLNLVVLDQQGQVQELRSDSGAGIMCWYAAAHPQLYLDAANEDFLVPPISLLWMLPGSATFTLYDRRPVAARFDTAVVQKGRDLAAAVTELRLRLGALKWLFAACLPRSTPYQVV 789
[Close]
BLAST of jgi.p|Trimin1|353673 vs. uniprot
Match: A0A835YUB2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUB2_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.410e-20
Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = 1 
Query:  127 QELRSPEGAGIMCWFAAAHPDLFLD----PTNHSFVVPPYVLRWGVCGRAKF-NGLDLVQFDTSVVQNGRDFIGTVTELRLRLGALRWLFDACVSNA 402
            QELRS +GAGIMCW+AAAHP L+LD    P + + + PP  LRW + GRA         +FD +V+Q+GR +   V EL LRLGAL+WLF ACV  A
Sbjct:  277 QELRSADGAGIMCWYAAAHPALYLDDAAAPCDDAPLAPPTALRWYMRGRADLARDGSAARFDAAVIQDGRRYDAAVQELGLRLGALKWLFAACVRPA 373
[Close]
BLAST of jgi.p|Trimin1|353673 vs. uniprot
Match: A0A835YV49_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV49_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.180e-6
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:  277 LDLVQFDTSVVQNGRDFIGTVTELRLRLGALRWLFDACVSNAKYFRLV 420
            L+LV      +QNG +F G VTELRLR+GA++WLFD CVS A  F  V
Sbjct:  154 LNLVDDPEDPLQNGSNFTGAVTELRLRMGAIKWLFDNCVSEADLFAWV 201
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353673 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835Z716_9STRA5.670e-115100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z606_9STRA1.060e-7792.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTF1_9STRA2.730e-4461.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CPA1_9STRA1.360e-3456.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YUB2_9STRA1.410e-2052.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YV49_9STRA2.180e-656.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_177contigContig_177:252573..254483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353673|estExt_Genemark1.C_Ctg_1770028
Hectar predicted targeting categoryother localisation
TranscriptId353995
TrackFilteredModels1
ProteinId353673
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353673gene_15697Tribonema minus UTEX_B_3156 geneContig_177 252573..254483 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15697_1exon_15697_1Tribonema minus UTEX_B_3156 exonContig_177 252573..252622 +
exon_15697_2exon_15697_2Tribonema minus UTEX_B_3156 exonContig_177 253489..253567 +
exon_15697_3exon_15697_3Tribonema minus UTEX_B_3156 exonContig_177 254118..254483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15697CDS_15697Tribonema minus UTEX_B_3156 CDSContig_177 252573..252622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353673Trimin1|353673|estExt_Genemark1.C_Ctg_1770028Tribonema minus UTEX_B_3156 polypeptideContig_177 252573..254483 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15697 ID=mRNA_15697|Name=jgi.p|Trimin1|353673|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=495bp|location=Sequence derived from alignment at Contig_177:252573..254483+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCAGAATCTGGAGCCCGAGCCGCCGCCAGGTTGCGTGCAGATGAG
CAACATCGAGCAGGACTTGGCATCGGCATTGAAACGCCTGCAGAAACTGG
TGGCCCTTGACCAACGGGGCCAGATGCAGGAGCTGCGGAGCCCGGAGGGC
GCCGGCATCATGTGCTGGTTTGCCGCCGCGCACCCCGACCTGTTCTTGGA
CCCGACGAACCATTCTTTTGTAGTGCCGCCTTATGTGCTACGCTGGGGCG
TGTGCGGAAGGGCAAAGTTCAATGGGCTTGATCTGGTGCAGTTTGACACC
TCCGTAGTGCAGAACGGCCGCGATTTTATTGGCACGGTGACAGAGCTGAG
GCTGCGCCTGGGCGCGCTTCGATGGCTCTTCGATGCGTGCGTGTCCAATG
CCAAGTACTTTCGCCTCGTGGAGACTGATGCTGATGTCCCCAGGCACATC
TCAAGCAGTCCAGACTCAGCCATCGCGAAATCAGCCGCGCTGTGA
back to top

protein sequence of jgi.p|Trimin1|353673

>Trimin1|353673|estExt_Genemark1.C_Ctg_1770028 ID=Trimin1|353673|estExt_Genemark1.C_Ctg_1770028|Name=jgi.p|Trimin1|353673|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=165bp
MVQNLEPEPPPGCVQMSNIEQDLASALKRLQKLVALDQRGQMQELRSPEG
AGIMCWFAAAHPDLFLDPTNHSFVVPPYVLRWGVCGRAKFNGLDLVQFDT
SVVQNGRDFIGTVTELRLRLGALRWLFDACVSNAKYFRLVETDADVPRHI
SSSPDSAIAKSAAL*
back to top

mRNA from alignment at Contig_177:252573..254483+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15697 ID=mRNA_15697|Name=jgi.p|Trimin1|353673|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1911bp|location=Sequence derived from alignment at Contig_177:252573..254483+ (Tribonema minus UTEX_B_3156 )
ATGGTGCAGAATCTGGAGCCCGAGCCGCCGCCAGGTTGCGTGCAGATGAG
GTGCCGCGGAAACAGCGAACACTCCCGTGTGGTGGAGCACTATTCGAGAT
AGTACTTGACAGGTCAGCACCTGCCGAGATCAGCCATTGTGGTGGTGTGC
CAACCACAGAGGGTGAAGTGTGTGAGACTCAGTCTCAACCTTGACTTGAA
ACAGCCGGAAATGCCCACTGCCTGGTGCCGTGGGAGGTGGACCGGAGCGC
CCTCCCCAAGTGCAATATCACCCTGATATGCAAGCGTGGCTACACAGGTA
GAAGCAGAAGAAGCTGTGCCATGTTGAAGGTTAAAGTCGTGTCTGATTAC
TGCACAAAAGGCATTCGCAATGCAATCCCTACTTCAACTACTGCTCAGCC
TAGGGTTGCCTCACTACAGAAGTGACCAGCAGGCTAAGCTCCATGTGTCC
ACCCCAGCACACACCAGCTGCTGTTGCAGCAGAAATGCACCATTTGAAAG
CCCAGCAGCGTGAAGGTGAGCTGAATGCATCGAGTGCTCTAGCGTGCGGC
GGCGTTACGATGTGGTGCACTTTCTTGCTGGAGTGGAAGTTATGGAAACC
CTGTACGCAGGATTCGATCCCTCATCACCAGAGTTAGCTCACCGAGGATA
TTTTTGGATGTTCAATCGCCGATAATATCTTTAGTTGTTCGCAAGAGTCA
AGTGGCACGAGGGCACTGTAGTGCATGCATACATGTATATATGTGTTGCC
TAGAGAGGGTGAGGGTGGATCTGCTCATGACTGACCTATGCATACCTCTG
GCCACTCTTTGTCATCTGGTGCTTGTGCAGCACTGGCAGAACGGCTTTGT
GGGATGGTTTGATCAGGACGGGCTTCTGGATCATGATGCTCTGGCAAACT
TTATCGCTGACCGCAGCAACATCGAGCAGGACTTGGCATCGGCATTGAAA
CGCCTGCAGAAACTGGTGGCCCTTGACCAACGGGGCCAGATGCAGGTGCA
TTTTCCAACAGATAAAAATATCTCAAAGGAAAGACTTACCTAGAGAGGCG
TTGCTGAGTGTATTCACAGTGTGGCATAGCCTGTCTTGGAGCGCTGAACA
GCCCATGTACACTTGTCATGCGACTCGCATAGGCTTAGGCTTCCGCGCAA
TATTTTTTCGCACGCCAACAACAGCAGCTCCAGCGTTTGATGGTGGAAGA
CTTGAAAAACTGACATGTGAATGTGCGTTCTCGGTCGCTAGTACCTGTTG
CCTTCATGATGAGGCGGCCACTTTTCAAAGATGTGTACTCTCGTGTTCAA
GCAGCAGAGTGGTTGCTCCAAAAGGGCATCTTCATGCCCCGAGTCAATTC
TGCAACTGCATGTGCCTAGGCTTCCTAACTTGTGTGCTCAAAGCAGTTAG
CATCATCTGGCTTCTTCTCAGTCAGCAGGCTCGCTACGGGCGTACTTTGT
ATATGTACATTATTCACCTTCCTGCTTACACACCCTGCACCGCGCCATCA
ACAGTCAACAGCGATCTGCTTTGATATTTCATTTTACGCGCACAGGAGCT
GCGGAGCCCGGAGGGCGCCGGCATCATGTGCTGGTTTGCCGCCGCGCACC
CCGACCTGTTCTTGGACCCGACGAACCATTCTTTTGTAGTGCCGCCTTAT
GTGCTACGCTGGGGCGTGTGCGGAAGGGCAAAGTTCAATGGGCTTGATCT
GGTGCAGTTTGACACCTCCGTAGTGCAGAACGGCCGCGATTTTATTGGCA
CGGTGACAGAGCTGAGGCTGCGCCTGGGCGCGCTTCGATGGCTCTTCGAT
GCGTGCGTGTCCAATGCCAAGTACTTTCGCCTCGTGGAGACTGATGCTGA
TGTCCCCAGGCACATCTCAAGCAGTCCAGACTCAGCCATCGCGAAATCAG
CCGCGCTGTGA
back to top

Coding sequence (CDS) from alignment at Contig_177:252573..254483+

>mRNA_15697 ID=mRNA_15697|Name=jgi.p|Trimin1|353673|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=495bp|location=Sequence derived from alignment at Contig_177:252573..254483+ (Tribonema minus UTEX_B_3156 )
ATGGTGCAGAATCTGGAGCCCGAGCCGCCGCCAGGTTGCGTGCAGATGAG
CAACATCGAGCAGGACTTGGCATCGGCATTGAAACGCCTGCAGAAACTGG
TGGCCCTTGACCAACGGGGCCAGATGCAGGAGCTGCGGAGCCCGGAGGGC
GCCGGCATCATGTGCTGGTTTGCCGCCGCGCACCCCGACCTGTTCTTGGA
CCCGACGAACCATTCTTTTGTAGTGCCGCCTTATGTGCTACGCTGGGGCG
TGTGCGGAAGGGCAAAGTTCAATGGGCTTGATCTGGTGCAGTTTGACACC
TCCGTAGTGCAGAACGGCCGCGATTTTATTGGCACGGTGACAGAGCTGAG
GCTGCGCCTGGGCGCGCTTCGATGGCTCTTCGATGCGTGCGTGTCCAATG
CCAAGTACTTTCGCCTCGTGGAGACTGATGCTGATGTCCCCAGGCACATC
TCAAGCAGTCCAGACTCAGCCATCGCGAAATCAGCCGCGCTGTGA
back to top