mRNA_15644 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176655
Unique NamemRNA_15644
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|176655 vs. uniprot
Match: A0A835ZAQ1_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ1_9STRA)

HSP 1 Score: 271 bits (692), Expect = 9.820e-92
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 
Query:    1 MSQAGVPANLTTYNLAFNACRNSEAVQQADRILASIAAAGVAPNRRTFARVLRACRYSRDWRRAIDVFRDMEANHPVFVDAGMWNCLLEVLSAYPAAESTLDAAAQMAESGFAPTTTTYMVLLQAHATLGDGAAIESVLSSMH 429
            MSQAGVPANLTTYNLAFNACRNSEAVQQADRILASIAAAGVAPNRRTFARVLRACRYSRDWRRAIDVFRDMEANHPVFVDAGMWNCLLEVLSAYPAAESTLDAAAQMAESGFAPTTTTYMVLLQAHATLGDGAAIESVLSSMH
Sbjct:    1 MSQAGVPANLTTYNLAFNACRNSEAVQQADRILASIAAAGVAPNRRTFARVLRACRYSRDWRRAIDVFRDMEANHPVFVDAGMWNCLLEVLSAYPAAESTLDAAAQMAESGFAPTTTTYMVLLQAHATLGDGAAIESVLSSMH 143
[Close]
BLAST of jgi.p|Trimin1|176655 vs. uniprot
Match: A0A835ZBY4_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY4_9STRA)

HSP 1 Score: 199 bits (506), Expect = 4.490e-63
Identity = 111/143 (77.62%), Postives = 113/143 (79.02%), Query Frame = 1 
Query:    1 MSQAGVPANLTTYNLAFNACRNSEAVQQADRILASIAAAGVAPNRRTFARVLRACRYSRDWRRAIDVFRDMEANHPVFVDAGMWNCLLEVLSAYPAAESTLDAAAQMAESGFAPTTTTYMVLLQAHATLGDGAAIESVLSSMH 429
            MSQ GVP NLTTYNLA  ACRNSEAVQQADRILAS+AAAG                  RDWRRAIDVFRDMEANH  FVDAGMWNCLLEVLSA  A +STLDAAAQMAE GFAPTTTTYM L QAHATLGDGAAIESVLSSMH
Sbjct:    1 MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMH 143
[Close]
BLAST of jgi.p|Trimin1|176655 vs. uniprot
Match: A0A835Z7V6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7V6_9STRA)

HSP 1 Score: 174 bits (440), Expect = 2.240e-52
Identity = 96/142 (67.61%), Postives = 113/142 (79.58%), Query Frame = 1 
Query:    1 MSQAGVPANLTTYNLAFNACRNSEAVQQADRILASIAAAGVAPNRRTFARVLRACRYSRDWRRAIDVFRDMEANHPVFVDAGMWNCLLEVLSAYPAAESTLDAAAQMAESGFAPTTTTYMVLLQAHATLGDGAAIESVLSSM 426
            MSQ G+P NL  YN+A +ACR+SEAVQQADRILAS+AAA VAPN RTFA +LRAC+ ++DWRRA++VF DMEA HP F +  MW+ L++VL A  A ESTLDAAA MAE G  PTT TY ++L AHA LGDG AIESVLSSM
Sbjct:    1 MSQTGLPPNLAAYNVALHACRSSEAVQQADRILASMAAASVAPNGRTFAGLLRACKMAKDWRRAVNVFFDMEAKHPEFANVYMWSRLVQVLYACAAPESTLDAAALMAELGVTPTTATYNMVLWAHARLGDGDAIESVLSSM 142
[Close]
BLAST of jgi.p|Trimin1|176655 vs. uniprot
Match: A0A835Z0W7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0W7_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.710e-43
Identity = 87/138 (63.04%), Postives = 104/138 (75.36%), Query Frame = 1 
Query:   13 GVPANLTTYNLAFNACRNSEAVQQADRILASIAAAGVAPNRRTFARVLRACRYSRDWRRAIDVFRDMEANHPVFVDAGMWNCLLEVLSAYPAAESTLDAAAQMAESGFAPTTTTYMVLLQAHATLGDGAAIESVLSSM 426
            G+P ++ ++NLA  A  +  A+Q ADRILAS+AAAGVAP+R+TF  VL+AC Y+RDW RAIDVF DMEANHP F DA MWN LL+V+ A  A ESTL+ AA MAE G  P T TY  +LQA+A LGDG AIESVL SM
Sbjct:    1 GLPPDVKSHNLALYAWCSDGAMQNADRILASMAAAGVAPDRQTFEGVLQACWYARDWHRAIDVFFDMEANHPEFADAQMWNRLLKVVYACAAPESTLEVAALMAELGVVPITATYTFILQAYARLGDGDAIESVLLSM 138
[Close]
BLAST of jgi.p|Trimin1|176655 vs. uniprot
Match: A0A835Z7U6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U6_9STRA)

HSP 1 Score: 161 bits (408), Expect = 2.970e-43
Identity = 90/142 (63.38%), Postives = 110/142 (77.46%), Query Frame = 1 
Query:    1 MSQAGVPANLTTYNLAFNACRNSEAVQQADRILASIAAAGVAPNRRTFARVLRACRYSRDWRRAIDVFRDMEANHPVFVDAGMWNCLLEVLSAYPAAESTLDAAAQMAESGFAPTTTTYMVLLQAHATLGDGAAIESVLSSM 426
            MS++ +P ++TTY+LA   CR+S+AVQQADRILAS+AAA VA +  TFA  LR C+ ++DWRRAI+VFRD+EANHP FVD  MWN LL+ L A    +S L AAAQMAE G APT  T +VLL+AHATLGD AA+E VLSSM
Sbjct:   36 MSRSCLPLDITTYSLALRGCRSSDAVQQADRILASMAAARVALDGGTFAGALRTCKVAQDWRRAINVFRDIEANHPAFVDVNMWNRLLQALCASEVPQSALAAAAQMAERGVAPTRETRLVLLKAHATLGDTAAVERVLSSM 177
[Close]
BLAST of jgi.p|Trimin1|176655 vs. uniprot
Match: A0A835Z225_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z225_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.110e-36
Identity = 78/142 (54.93%), Postives = 100/142 (70.42%), Query Frame = 1 
Query:    1 MSQAGVPANLTTYNLAFNACRNSEAVQQADRILASIAAAGVAPNRRTFARVLRACRYSRDWRRAIDVFRDMEANHPVFVDAGMWNCLLEVLSAYPAAESTLDAAAQMAESGFAPTTTTYMVLLQAHATLGDGAAIESVLSSM 426
            M Q+G P +LT YNLA + C  S AV  AD+ILA +AA G+APNR TF  +LRAC+ ++D  RA+ VFR +EA++PV VDA MW CLL+ LS     ++ L AAA+MAE G  PT   Y+V+ +AHA LGDGAA E+ LSSM
Sbjct:  163 MEQSGTPPDLTAYNLALHTCCGSSAVLHADKILADMAAMGLAPNRHTFRGMLRACKQAQDCERALAVFRSVEAHYPVDVDADMWICLLDALSVCRQPQAVLTAAARMAERGLLPTAAIYVVIAKAHAELGDGAAAETALSSM 304
[Close]
BLAST of jgi.p|Trimin1|176655 vs. uniprot
Match: A0A835Z0G4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0G4_9STRA)

HSP 1 Score: 138 bits (347), Expect = 4.370e-35
Identity = 72/142 (50.70%), Postives = 99/142 (69.72%), Query Frame = 1 
Query:    1 MSQAGVPANLTTYNLAFNACRNSEAVQQADRILASIAAAGVAPNRRTFARVLRACRYSRDWRRAIDVFRDMEANHPVFVDAGMWNCLLEVLSAYPAAESTLDAAAQMAESGFAPTTTTYMVLLQAHATLGDGAAIESVLSSM 426
            M+Q+G P +LT YNLA + C    AV  AD+ILA +AA G+APNR TF  +LRACR ++DW RA+ VF  +EA++P ++D  +W CLL+ LS     ++ L+AAA+MAE G   T   ++V+ +AHA LGDGAA E+ LSSM
Sbjct:  442 MAQSGTPPDLTAYNLALHTCSGGSAVLHADKILADMAAMGLAPNRHTFRGMLRACRMAQDWERALAVFGSVEAHYPAYMDTDLWICLLDALSVCRQPQAVLEAAARMAERGLPTTAAVHVVIAKAHAELGDGAAAETALSSM 583
[Close]
BLAST of jgi.p|Trimin1|176655 vs. uniprot
Match: A0A835Z2Y9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Y9_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.080e-34
Identity = 85/142 (59.86%), Postives = 91/142 (64.08%), Query Frame = 1 
Query:    1 MSQAGVPANLTTYNLAFNACRNSEAVQQADRILASIAAAGVAPNRRTFARVLRACRYSRDWRRAIDVFRDMEANHPVFVDAGMWNCLLEVLSAYPAAESTLDAAAQMAESGFAPTTTTYMVLLQAHATLGDGAAIESVLSSM 426
            MSQAGVPA  TTYNLA  ACR+S AV QADRIL                      RY++DWRRAIDVF  MEAN P F D   WN LL VLSA  A  STL AAA MAE G AP   TYM++LQA+A LGDGAAIESVLS M
Sbjct:  211 MSQAGVPAISTTYNLALRACRDSAAVHQADRILXXXXXXXXXXXXXXXXXXXXXXRYAQDWRRAIDVFFAMEANLPAFADVYTWNRLLRVLSACSAPRSTLAAAALMAERGVAPIALTYMLILQAYAMLGDGAAIESVLSIM 352
[Close]
BLAST of jgi.p|Trimin1|176655 vs. uniprot
Match: A0A835Z2F3_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2F3_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.670e-31
Identity = 74/181 (40.88%), Postives = 96/181 (53.04%), Query Frame = 1 
Query:    1 MSQAGVPANLTTYNLAFNACRNSEAVQQADRILASIAAAGVAPNRRTFARVLRACRYSRDWRRAID---------------------------------------VFRDMEANHPVFVDAGMWNCLLEVLSAYPAAESTLDAAAQMAESGFAPTTTTYMVLLQAHATLGDGAAIESVLSSM 426
            MSQ G P +L  YNLA  ACR   AV  AD+ILA +AAAG+A +R TF  +L AC+ + +W RA+                                        VFRD E NHP FVDA MW CL++ L+        L AAA+MAE G AP+  T M +L+AHA LGD AA++++L S+
Sbjct:   13 MSQCGTPPDLAAYNLALRACRGGNAVLHADKILADMAAAGLAADRHTFRSMLHACKQAHNWERALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVFRDAETNHPAFVDADMWTCLVQALAMCGQPRRVLAAAARMAERGVAPSAVTSMAVLKAHAELGDAAAVDAMLPSV 193
[Close]
BLAST of jgi.p|Trimin1|176655 vs. uniprot
Match: A0A835Z021_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z021_9STRA)

HSP 1 Score: 118 bits (296), Expect = 6.800e-31
Identity = 66/107 (61.68%), Postives = 79/107 (73.83%), Query Frame = 1 
Query:  106 IAAAGVAPNRRTFARVLRACRYSRDWRRAIDVFRDMEANHPVFVDAGMWNCLLEVLSAYPAAESTLDAAAQMAESGFAPTTTTYMVLLQAHATLGDGAAIESVLSSM 426
            +AAAG+AP+ RTFA VL+ CR++RDWRRAI VF DMEA HP F DA  WN LL+VL  +PA +STL AAA MA+ G  P T TY  +L AHA  GD AAI+ VL+SM
Sbjct:    1 MAAAGIAPDGRTFAGVLQTCRHARDWRRAIYVFFDMEAKHPEFADAHTWNRLLQVLYVHPAPDSTLAAAALMAQRGVVPITATYNTVLWAHAMRGDSAAIKKVLTSM 107
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176655 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A835ZAQ1_9STRA9.820e-92100.00PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A835ZBY4_9STRA4.490e-6377.62PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A835Z7V6_9STRA2.240e-5267.61Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z0W7_9STRA1.710e-4363.04Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z7U6_9STRA2.970e-4363.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z225_9STRA1.110e-3654.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z0G4_9STRA4.370e-3550.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z2Y9_9STRA1.080e-3459.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z2F3_9STRA4.670e-3140.88PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z021_9STRA6.800e-3161.68Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_140contigContig_140:250226..250654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176655|e_gw1.140.43.1
BRITEko00000,ko03016,ko03029
KEGG koko:K17710
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
DescriptionPentatricopeptide repeat-containing protein At5g02830
COG categoryS
Max annot lvl33090|Viridiplantae
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota,37JEI@33090|Viridiplantae
Evalue0.000707
Seed ortholog248742.XP_005651727.1
Hectar predicted targeting categoryother localisation
TranscriptId176977
TrackFilteredModels1
ProteinId176655
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176655gene_15644Tribonema minus UTEX_B_3156 geneContig_140 250226..250654 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15644_1exon_15644_1Tribonema minus UTEX_B_3156 exonContig_140 250226..250654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15644CDS_15644Tribonema minus UTEX_B_3156 CDSContig_140 250226..250654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176655Trimin1|176655|e_gw1.140.43.1Tribonema minus UTEX_B_3156 polypeptideContig_140 250226..250654 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15644 ID=mRNA_15644|Name=jgi.p|Trimin1|176655|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=429bp|location=Sequence derived from alignment at Contig_140:250226..250654+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACAGGCCGGGGTGCCGGCGAATCTAACGACGTACAATCTGGCATT
TAATGCATGCCGCAACAGTGAAGCCGTGCAGCAGGCCGACAGGATTCTGG
CGAGCATAGCAGCTGCTGGCGTCGCCCCCAACAGGCGCACCTTTGCGCGC
GTGCTGCGGGCGTGCAGGTACTCGCGAGACTGGCGCCGCGCAATCGACGT
CTTCCGCGACATGGAGGCGAATCACCCCGTCTTTGTCGACGCGGGCATGT
GGAACTGCCTCCTAGAGGTGCTATCCGCGTACCCTGCGGCAGAAAGCACG
CTCGATGCGGCGGCTCAAATGGCGGAGAGTGGGTTTGCGCCCACCACTAC
CACGTACATGGTCCTCTTGCAGGCGCATGCCACGCTCGGCGATGGCGCCG
CGATTGAGAGCGTGCTGTCGAGCATGCAC
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protein sequence of jgi.p|Trimin1|176655

>Trimin1|176655|e_gw1.140.43.1 ID=Trimin1|176655|e_gw1.140.43.1|Name=jgi.p|Trimin1|176655|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=143bp
MSQAGVPANLTTYNLAFNACRNSEAVQQADRILASIAAAGVAPNRRTFAR
VLRACRYSRDWRRAIDVFRDMEANHPVFVDAGMWNCLLEVLSAYPAAEST
LDAAAQMAESGFAPTTTTYMVLLQAHATLGDGAAIESVLSSMH
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mRNA from alignment at Contig_140:250226..250654+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15644 ID=mRNA_15644|Name=jgi.p|Trimin1|176655|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=429bp|location=Sequence derived from alignment at Contig_140:250226..250654+ (Tribonema minus UTEX_B_3156 )
ATGTCACAGGCCGGGGTGCCGGCGAATCTAACGACGTACAATCTGGCATT
TAATGCATGCCGCAACAGTGAAGCCGTGCAGCAGGCCGACAGGATTCTGG
CGAGCATAGCAGCTGCTGGCGTCGCCCCCAACAGGCGCACCTTTGCGCGC
GTGCTGCGGGCGTGCAGGTACTCGCGAGACTGGCGCCGCGCAATCGACGT
CTTCCGCGACATGGAGGCGAATCACCCCGTCTTTGTCGACGCGGGCATGT
GGAACTGCCTCCTAGAGGTGCTATCCGCGTACCCTGCGGCAGAAAGCACG
CTCGATGCGGCGGCTCAAATGGCGGAGAGTGGGTTTGCGCCCACCACTAC
CACGTACATGGTCCTCTTGCAGGCGCATGCCACGCTCGGCGATGGCGCCG
CGATTGAGAGCGTGCTGTCGAGCATGCAC
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Coding sequence (CDS) from alignment at Contig_140:250226..250654+

>mRNA_15644 ID=mRNA_15644|Name=jgi.p|Trimin1|176655|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=429bp|location=Sequence derived from alignment at Contig_140:250226..250654+ (Tribonema minus UTEX_B_3156 )
ATGTCACAGGCCGGGGTGCCGGCGAATCTAACGACGTACAATCTGGCATT
TAATGCATGCCGCAACAGTGAAGCCGTGCAGCAGGCCGACAGGATTCTGG
CGAGCATAGCAGCTGCTGGCGTCGCCCCCAACAGGCGCACCTTTGCGCGC
GTGCTGCGGGCGTGCAGGTACTCGCGAGACTGGCGCCGCGCAATCGACGT
CTTCCGCGACATGGAGGCGAATCACCCCGTCTTTGTCGACGCGGGCATGT
GGAACTGCCTCCTAGAGGTGCTATCCGCGTACCCTGCGGCAGAAAGCACG
CTCGATGCGGCGGCTCAAATGGCGGAGAGTGGGTTTGCGCCCACCACTAC
CACGTACATGGTCCTCTTGCAGGCGCATGCCACGCTCGGCGATGGCGCCG
CGATTGAGAGCGTGCTGTCGAGCATGCAC
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