mRNA_15641 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|176671
Unique Name	mRNA_15641
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|176671 vs. uniprot
Match: A0A836CK48_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK48_9STRA)

HSP 1 Score: 199 bits (507), Expect = 6.070e-65
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1

Query:    1 QVHDNSPASACGLRTDDFLLSFGPHSQATLASARDFKAAVQAAANTPTEIWVQRPGVGRLRLSLTPQAWSGQGLLGCTVHMNPQLGRSPSAAAPRPAG 294
            QVHDNSPASACGLRTDDFLLSFGPHSQATLASARDFKAAVQAAANTPTEIWVQRPGVGRLRLSLTPQAWSGQGLLGCTVHMNPQLGRSPSAAAPRPAG
Sbjct:    1 QVHDNSPASACGLRTDDFLLSFGPHSQATLASARDFKAAVQAAANTPTEIWVQRPGVGRLRLSLTPQAWSGQGLLGCTVHMNPQLGRSPSAAAPRPAG 98

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BLAST of jgi.p|Trimin1|176671 vs. uniprot
Match: A0A8K0P5C8_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0P5C8_LADFU)

HSP 1 Score: 64.7 bits (156), Expect = 1.770e-10
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1

Query:    4 VHDNSPASACGLRTDDFLLSFGPHSQATLASARDFKAAVQAAANTPTEIWVQRPGVG---RLRLSLTPQAWSGQGLLGCTV 237
            V  NSPAS  G++ DD ++ FG  +     S  D    V+A+ +TP E+ V R   G   +++L+LTP+ W GQGLLGC +
Sbjct:  132 VTPNSPASVAGVQEDDLIVQFGSVNSDNFRSLHDIGNVVKASVDTPVEVIVLRTMYGTVKKVKLTLTPRVWDGQGLLGCNI 212

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BLAST of jgi.p|Trimin1|176671 vs. uniprot
Match: UPI001ED891C5 (26S proteasome non-ATPase regulatory subunit 9 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED891C5)

HSP 1 Score: 60.8 bits (146), Expect = 4.530e-9
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 1

Query:    4 VHDNSPASACGLRTDDFLLSFGPHSQATLASARDFKAAVQAAANTPTEIWVQRPGVG---RLRLSLTPQAWSGQGLLGCTV 237
            V  NSPAS  G+  DD ++ FG  +     S +D    V+A+   P E+ V R  +G   +++L+LTP+ W GQGLLGC +
Sbjct:  125 VTPNSPASDAGVMEDDVIVQFGSVNADNFRSLQDIGNVVRASVGMPVEVIVLRKWLGTQKKVKLTLTPRKWDGQGLLGCNI 205

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BLAST of jgi.p|Trimin1|176671 vs. uniprot
Match: UPI0011EA3944 (26S proteasome non-ATPase regulatory subunit 9 n=1 Tax=Archocentrus centrarchus TaxID=63155 RepID=UPI0011EA3944)

HSP 1 Score: 60.5 bits (145), Expect = 6.030e-9
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 1

Query:    4 VHDNSPASACGLRTDDFLLSFGPHSQATLASARDFKAAVQAAANTPTEIWVQRPGVGRLRLSLTPQAWSGQGLLGCTV 237
            V + SPAS  GLR  D L+ FG  +       +D  + VQ +   P  + V R G  ++++SLTPQ WSG+GLLGC +
Sbjct:  131 VTEGSPASGAGLRVGDELIEFGSVNTENFQKLQDIASVVQHSEGKPLRVSVIRAGQ-KVQMSLTPQRWSGRGLLGCNI 207

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BLAST of jgi.p|Trimin1|176671 vs. uniprot
Match: A0A1B6F5D3_9HEMI (26S proteasome non-ATPase regulatory subunit 9 n=4 Tax=Proconiini TaxID=565685 RepID=A0A1B6F5D3_9HEMI)

HSP 1 Score: 60.1 bits (144), Expect = 8.310e-9
Identity = 33/83 (39.76%), Postives = 44/83 (53.01%), Query Frame = 1

Query:    4 VHDNSPASACGLRTDDFLLSFGPHSQATLASARDFKAAVQAAANTPTEIWVQRPGV-GRLRLSLTPQAWSGQGLLGCTVHMNP 249
            V   SPA  CGL+ +D LL FG  ++    S +D    V+ +      + V+R G    L L LTPQ WSGQGL+GC +   P
Sbjct:  123 VSAGSPADLCGLQANDQLLEFGSVNKGNFKSMQDIATVVRHSTGQMVNVTVKRKGRHSSLHLHLTPQTWSGQGLIGCKIDPLP 205

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BLAST of jgi.p|Trimin1|176671 vs. uniprot
Match: UPI000A2A772A (26S proteasome non-ATPase regulatory subunit 9 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A772A)

HSP 1 Score: 59.7 bits (143), Expect = 9.560e-9
Identity = 33/78 (42.31%), Postives = 43/78 (55.13%), Query Frame = 1

Query:    4 VHDNSPASACGLRTDDFLLSFGPHSQATLASARDFKAAVQAAANTPTEIWVQRPGVGRLRLSLTPQAWSGQGLLGCTV 237
            V + SPAS  GL+ DD +L FG  S       ++    VQ +   P  + V R G  ++ LSLTP  WSG+GLLGC V
Sbjct:  116 VAEESPASKAGLQRDDLILKFGSLSSTNFKELKNVATVVQHSKGVPMHVTVLR-GEQQVYLSLTPNTWSGRGLLGCHV 192

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BLAST of jgi.p|Trimin1|176671 vs. uniprot
Match: A0A8C5DYK5_9TELE (26S proteasome non-ATPase regulatory subunit 9 n=2 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5DYK5_9TELE)

HSP 1 Score: 60.1 bits (144), Expect = 9.730e-9
Identity = 31/78 (39.74%), Postives = 44/78 (56.41%), Query Frame = 1

Query:    4 VHDNSPASACGLRTDDFLLSFGPHSQATLASARDFKAAVQAAANTPTEIWVQRPGVGRLRLSLTPQAWSGQGLLGCTV 237
            V   SPAS  GLR  D ++ FG  +     S ++  + VQ +   P  + V R G  ++ +SLTPQ WSG+GLLGC +
Sbjct:  144 VTSGSPASGAGLRVGDEVIEFGSVNTGNFQSLQNISSVVQHSEGKPLRVTVMRAGQ-KVNMSLTPQRWSGRGLLGCNI 220

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BLAST of jgi.p|Trimin1|176671 vs. uniprot
Match: UPI001BB19004 (26S proteasome non-ATPase regulatory subunit 9-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB19004)

HSP 1 Score: 59.7 bits (143), Expect = 1.160e-8
Identity = 32/78 (41.03%), Postives = 42/78 (53.85%), Query Frame = 1

Query:    4 VHDNSPASACGLRTDDFLLSFGPHSQATLASARDFKAAVQAAANTPTEIWVQRPGVGRLRLSLTPQAWSGQGLLGCTV 237
            V   SPA   G+   D +L FG  +     S +D    VQ + N P  + VQR    ++ LSLTPQ WSG+GLLGC +
Sbjct:  131 VSQGSPAEKAGVHVGDKILEFGSVTSMNFRSIKDIAPVVQHSQNKPIRVVVQRDE-DKVTLSLTPQTWSGRGLLGCNI 207

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BLAST of jgi.p|Trimin1|176671 vs. uniprot
Match: A0A8C9V5Z0_SCLFO (26S proteasome non-ATPase regulatory subunit 9 n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9V5Z0_SCLFO)

HSP 1 Score: 59.3 bits (142), Expect = 1.630e-8
Identity = 30/78 (38.46%), Postives = 44/78 (56.41%), Query Frame = 1

Query:    4 VHDNSPASACGLRTDDFLLSFGPHSQATLASARDFKAAVQAAANTPTEIWVQRPGVGRLRLSLTPQAWSGQGLLGCTV 237
            +   SPAS CGLR  D ++ FG  +     +  +  + VQ +   P  + V R G  +++L LTPQ WSG+GLLGC +
Sbjct:  131 ITQGSPASQCGLRVGDEIIEFGSVNTENFQNLHNIASVVQHSEGKPLSVTVVRSGQ-KVQLCLTPQQWSGRGLLGCNI 207

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BLAST of jgi.p|Trimin1|176671 vs. uniprot
Match: UPI000C04D60A (26S proteasome non-ATPase regulatory subunit 9-like isoform X1 n=3 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C04D60A)

HSP 1 Score: 58.5 bits (140), Expect = 2.780e-8
Identity = 31/78 (39.74%), Postives = 44/78 (56.41%), Query Frame = 1

Query:    4 VHDNSPASACGLRTDDFLLSFGPHSQATLASARDFKAAVQAAANTPTEIWVQRPGVGRLRLSLTPQAWSGQGLLGCTV 237
            V D SP+S  GL+  D++L FG  +     S  D  + VQ +   P  + V+R    ++ +SLTP  WSGQGLLGC +
Sbjct:  121 VADGSPSSQAGLKVGDYILKFGSINAGNFHSLVDIASVVQHSKGRPMSVTVKRGEKSQI-ISLTPNIWSGQGLLGCHI 197

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|176671 vs. uniprot

BLAST of jgi.p|Trimin1|176671 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836CK48_9STRA	6.070e-65	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A8K0P5C8_LADFU	1.770e-10	40.74	Uncharacterized protein n=1 Tax=Ladona fulva TaxID...	[more]
UPI001ED891C5	4.530e-9	39.51	26S proteasome non-ATPase regulatory subunit 9 n=1...	[more]
UPI0011EA3944	6.030e-9	41.03	26S proteasome non-ATPase regulatory subunit 9 n=1...	[more]
A0A1B6F5D3_9HEMI	8.310e-9	39.76	26S proteasome non-ATPase regulatory subunit 9 n=4...	[more]
UPI000A2A772A	9.560e-9	42.31	26S proteasome non-ATPase regulatory subunit 9 n=1...	[more]
A0A8C5DYK5_9TELE	9.730e-9	39.74	26S proteasome non-ATPase regulatory subunit 9 n=2...	[more]
UPI001BB19004	1.160e-8	41.03	26S proteasome non-ATPase regulatory subunit 9-lik...	[more]
A0A8C9V5Z0_SCLFO	1.630e-8	38.46	26S proteasome non-ATPase regulatory subunit 9 n=2...	[more]
UPI000C04D60A	2.780e-8	39.74	26S proteasome non-ATPase regulatory subunit 9-lik...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_140	contig	Contig_140:214140..214436 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|176671\|e_gw1.140.38.1
BRITE	ko00000,ko03051
KEGG ko	ko:K06693
Description	Domain present in PSD-95, Dlg, and ZO-1/2.
COG category	O
Max annot lvl	3041\|Chlorophyta
EggNOG OGs	COG0265@1\|root,KOG3129@2759\|Eukaryota,37R2T@33090\|Viridiplantae,34M2A@3041\|Chlorophyta
Evalue	1.38e-09
Seed ortholog	296587.XP_002504641.1
Hectar predicted targeting category	other localisation
TranscriptId	176993
Track	FilteredModels1
ProteinId	176671

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|176671	gene_15641	Tribonema minus UTEX_B_3156	gene	Contig_140 214140..214436 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_15641_1	exon_15641_1	Tribonema minus UTEX_B_3156	exon	Contig_140 214140..214436 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_15641	CDS_15641	Tribonema minus UTEX_B_3156	CDS	Contig_140 214140..214436 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|176671	Trimin1\|176671\|e_gw1.140.38.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_140 214140..214436 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_140:214140..214436-
coding sequence from alignment at Contig_140:214140..214436-

spliced messenger RNA

>mRNA_15641 ID=mRNA_15641|Name=jgi.p|Trimin1|176671|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=297bp|location=Sequence derived from alignment at Contig_140:214140..214436- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGTGCACGACAACTCCCCGGCGTCCGCTTGCGGCCTTCGCACAGACGA
CTTCCTCCTGTCCTTCGGCCCGCACTCGCAGGCCACGCTGGCCTCCGCCC
GCGACTTCAAAGCGGCAGTGCAGGCTGCTGCAAACACGCCCACGGAGATA
TGGGTGCAGCGACCTGGCGTCGGTCGTCTGCGGCTGTCGCTGACGCCTCA
GGCGTGGTCGGGCCAAGGCCTGCTGGGCTGCACTGTACACATGAACCCTC
AACTGGGGCGCAGTCCGTCTGCCGCTGCGCCACGCCCTGCTGGCTGA

protein sequence of jgi.p|Trimin1|176671

>Trimin1|176671|e_gw1.140.38.1 ID=Trimin1|176671|e_gw1.140.38.1|Name=jgi.p|Trimin1|176671|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=99bp
QVHDNSPASACGLRTDDFLLSFGPHSQATLASARDFKAAVQAAANTPTEI
WVQRPGVGRLRLSLTPQAWSGQGLLGCTVHMNPQLGRSPSAAAPRPAG*

mRNA from alignment at Contig_140:214140..214436-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_15641 ID=mRNA_15641|Name=jgi.p|Trimin1|176671|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=297bp|location=Sequence derived from alignment at Contig_140:214140..214436- (Tribonema minus UTEX_B_3156 )
CAGGTGCACGACAACTCCCCGGCGTCCGCTTGCGGCCTTCGCACAGACGA
CTTCCTCCTGTCCTTCGGCCCGCACTCGCAGGCCACGCTGGCCTCCGCCC
GCGACTTCAAAGCGGCAGTGCAGGCTGCTGCAAACACGCCCACGGAGATA
TGGGTGCAGCGACCTGGCGTCGGTCGTCTGCGGCTGTCGCTGACGCCTCA
GGCGTGGTCGGGCCAAGGCCTGCTGGGCTGCACTGTACACATGAACCCTC
AACTGGGGCGCAGTCCGTCTGCCGCTGCGCCACGCCCTGCTGGCTGA

Coding sequence (CDS) from alignment at Contig_140:214140..214436-

>mRNA_15641 ID=mRNA_15641|Name=jgi.p|Trimin1|176671|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=297bp|location=Sequence derived from alignment at Contig_140:214140..214436- (Tribonema minus UTEX_B_3156 )
CAGGTGCACGACAACTCCCCGGCGTCCGCTTGCGGCCTTCGCACAGACGA
CTTCCTCCTGTCCTTCGGCCCGCACTCGCAGGCCACGCTGGCCTCCGCCC
GCGACTTCAAAGCGGCAGTGCAGGCTGCTGCAAACACGCCCACGGAGATA
TGGGTGCAGCGACCTGGCGTCGGTCGTCTGCGGCTGTCGCTGACGCCTCA
GGCGTGGTCGGGCCAAGGCCTGCTGGGCTGCACTGTACACATGAACCCTC
AACTGGGGCGCAGTCCGTCTGCCGCTGCGCCACGCCCTGCTGGCTGA