mRNA_15640 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|143593
Unique NamemRNA_15640
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Match: A0A836CLA3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLA3_9STRA)

HSP 1 Score: 327 bits (837), Expect = 3.160e-113
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1
Query:    1 PEQECVAAALVRMTERALLPGGGSLEDVFTDGLDFLVLVPRFTTLQQQTAARVQKMGLADGAGGSIGQRVIMYQARSGSGTSKMFQRFKSESETHSKRLFCIIADECHWGATKTGAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQPDNVLKW 486
            PEQECVAAALVRMTERALLPGGGSLEDVFTDGLDFLVLVPRFTTLQQQTAARVQKMGLADGAGGSIGQRVIMYQARSGSGTSKMFQRFKSESETHSKRLFCIIADECHWGATKTGAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQPDNVLKW
Sbjct:    1 PEQECVAAALVRMTERALLPGGGSLEDVFTDGLDFLVLVPRFTTLQQQTAARVQKMGLADGAGGSIGQRVIMYQARSGSGTSKMFQRFKSESETHSKRLFCIIADECHWGATKTGAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQPDNVLKW 162          
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Match: R1D1D9_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D1D9_EMIHU)

HSP 1 Score: 107 bits (268), Expect = 4.200e-24
Identity = 74/166 (44.58%), Postives = 102/166 (61.45%), Query Frame = 1
Query:    4 EQECVAAALVRMTERALLPGGGSLEDVFTDGLDFLVLVPRFTTLQQQTAARVQKMGLAD-GAGGSIGQRVIMYQARSGSGTSKMFQRFKSES-ETHSKRLFCIIADECHWGATKTGAYSQFVNQFGDGDKRQ---KNVVILLVSATPYNCLTRDSRVTQPDNVLKW 486
            EQ  VA AL+R T RA+L  GG   D FTD + FL+LVP FTTL+ QTA RV++ GL + G+      +VIM+       ++K F++FK+++ + +   LF IIADECH+  T+ G  S +VN     D +     N+V+LL SATP+NCLTR SR+T P     W
Sbjct:  502 EQAKVAEALLRRT-RAML--GGEAFDKFTD-MQFLILVPAFTTLKAQTAYRVRRAGLTERGSNDDEFSKVIMHSCGD---SAKYFEKFKAKAIKDNGTTLFVIIADECHYSPTRGGYQSVYVN-----DAKLLGLPNLVVLLNSATPFNCLTRKSRITGPLTSDSW 655          
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Match: A0A2P6MUX9_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MUX9_9EUKA)

HSP 1 Score: 84.3 bits (207), Expect = 6.560e-16
Identity = 55/133 (41.35%), Postives = 76/133 (57.14%), Query Frame = 1
Query:   91 DGLDFLVLVPRFTTLQQQTAARVQKMGLADGAGGSIGQRVIMYQARSGSGTSKM-FQRFKSESETHSKRLFCIIADECHWGATKTGAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQPDNVLKW 486
            DGL   V   RF +L +QT+ R+++MGL         +RVIMY  +   G SK  F  F  + E + KRLF  + DECHWG    GA   +VN       + KNVV+LL++ATP+N  T  SR+ + +NV+KW
Sbjct: 1741 DGLK-RVQTARFRSLMEQTSQRLREMGLEHE------RRVIMYCKK---GQSKADFDLFIDKVEKNEKRLFIFVVDECHWGINSKGANDTYVND--PRILKAKNVVVLLITATPWNMYTTGSRLKE-ENVVKW 1860          
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Match: A0A2R5GIV1_9STRA (GREB1-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GIV1_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.680e-15
Identity = 66/164 (40.24%), Postives = 84/164 (51.22%), Query Frame = 1
Query:    1 PEQECVAAALVRMTERALLPGGGSLEDVFT-DGLDFLVLVPRFTTLQQQTAARVQKMGLADGAGGSIGQRVIMYQARSGSGTSKMFQRFKSESETHSKR-LFCIIADECHWGATKTGAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQPDNVLKW 486
            PEQ  VA  L R   RAL P   + + V   D + F+VL P F +LQ QTA RV++  L +G       RV+ +     S       R   E+E    R L  IIADECH+  TK GA+   +N   +     KNV+ LLVSATP N LT  SR+  P NV+ W
Sbjct: 2541 PEQRDVAEELFRKAGRALFPEQETPDWVSRFDKVSFVVLTPNFNSLQSQTADRVRRAMLENG-------RVLKHTKVPHSVMED--HRAWMEAEARDPRTLLVIIADECHYAPTKNGAHDWLLN---NKHLNGKNVLRLLVSATPQNVLTNKSRIA-PQNVVCW 2691          
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Match: UPI00077AA744 (uncharacterized protein LOC107328714 n=2 Tax=Acropora TaxID=6127 RepID=UPI00077AA744)

HSP 1 Score: 81.6 bits (200), Expect = 5.620e-15
Identity = 52/143 (36.36%), Postives = 80/143 (55.94%), Query Frame = 1
Query:   91 DGLDFLVLVPRFTTLQQQTAARV--------QKMGLADGAGGSIGQRVIMYQARSGSGTSKMFQRFKSESETHSKRLFCIIADECHWGATKT-----GAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQPDNVL 480
            D +DF+V   R+  L  QT  R+         K  L     G++ +R+ MY  RS   T++ F++ K E     + LF IIADECHWG TK       A++ F+N++G  +   +NVV+L +SATP+N LT++SR+ +   +L
Sbjct:  242 DDVDFVVYTARYRMLSDQTEKRICHPHAGVLSKEELEARHEGNVQKRMFMY-IRSAE-TNEHFKQLKREIHEKPRTLFIIIADECHWGITKDKDQTLSAHNLFINEWGK-ENSPRNVVVLQISATPFNLLTQNSRLPEVKCIL 381          
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Match: UPI001CF3DEF0 (uncharacterized protein LOC114976518 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF3DEF0)

HSP 1 Score: 81.6 bits (200), Expect = 5.620e-15
Identity = 50/143 (34.97%), Postives = 79/143 (55.24%), Query Frame = 1
Query:   91 DGLDFLVLVPRFTTLQQQTAARV--------QKMGLADGAGGSIGQRVIMYQARSGSGTSKMFQRFKSESETHSKRLFCIIADECHWGATKT-----GAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQPDNVL 480
            D +DF+V   ++  L  QT  R+         K  L     G++ +R+ MY       T+  F++ K + E   + LF IIADECHWG TK       A++ F+N++G  +K  +NVV+L +SATP+N LT++SR+ +   +L
Sbjct:  234 DDVDFVVYTAKYKMLSDQTEKRICHPHAGVLSKEELEARHEGNVKKRMFMYSRSEV--TNGHFKQLKRDIEDKPRTLFIIIADECHWGITKDKEQTPSAHNLFINEWGK-EKSPRNVVVLQISATPFNLLTQNSRLPEVKCIL 373          
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Match: UPI00077A0145 (uncharacterized protein LOC107334600 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A0145)

HSP 1 Score: 80.5 bits (197), Expect = 1.170e-14
Identity = 51/143 (35.66%), Postives = 79/143 (55.24%), Query Frame = 1
Query:   91 DGLDFLVLVPRFTTLQQQTAARV--------QKMGLADGAGGSIGQRVIMYQARSGSGTSKMFQRFKSESETHSKRLFCIIADECHWGATKT-----GAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQPDNVL 480
            D +DF+V   R+  L  QT  R+         K  L     G++ +R+ MY  RS   T   F++ K + +   + LF IIADECHWG TK       A++ F+N++G  +   +NVV+L +SATP+N LT++SR+ +   +L
Sbjct:   29 DDVDFVVYTARYRMLSDQTEKRICHPHAGVLSKEELEARHEGNVQKRMFMY-VRSAE-TDGHFEQLKRDIQDKPRTLFIIIADECHWGITKDKDQTLSAHNLFINEWGK-ENSPRNVVVLQISATPFNLLTQNSRLPEVKCIL 168          
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Match: UPI00077A1F9C (uncharacterized protein LOC107334601 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A1F9C)

HSP 1 Score: 80.1 bits (196), Expect = 1.730e-14
Identity = 53/148 (35.81%), Postives = 82/148 (55.41%), Query Frame = 1
Query:   61 GGGSLEDVFTDGLDFLVLVPRFTTLQQQTAARV--------QKMGLADGAGGSIGQRVIMYQARSGSGTSKMFQRFKSESETHSKRLFCIIADECHWGATKT-----GAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQ 465
            G   L + F D +DF+V   R+  L  QT  R+         K  L     G++ +R+ MY  RS   T   F++ K + +   + LF IIADECHWG TK       A++ F+N++G  ++  +NVV+L +SATP+N LT++SR+ +
Sbjct:  174 GIDELSNAFDD-VDFVVYTARYRMLSDQTEKRICHPHAGVLSKEELEARHEGNVQKRMFMY-VRSAE-TDGHFEQLKRDIQDKPRTLFIIIADECHWGITKDKDQTPSAHNLFINEWGK-EQSPRNVVVLQISATPFNLLTQNSRLRE 317          
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Match: UPI0009E31437 (uncharacterized protein LOC110051160 isoform X1 n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E31437)

HSP 1 Score: 79.3 bits (194), Expect = 3.580e-14
Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = 1
Query:   70 SLEDVFTDGLDFLVLVPRFTTLQQQTAARV----------QKMGLADGAGGSIGQRVIMYQARSGSGTSKMFQRFKSESETHSKRLFCIIADECHWGATKT-----GAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQ 465
            SL DVF D ++F+V   R+  L  QT  R+          +++   DG  G   +R+ MY   +   T K FQ  K +       LF IIADECHWG TK       A++ F+N++   +K  +NVV++ +SATP+N LT++SR+ +
Sbjct:  229 SLSDVFND-VEFVVYTARYRMLSDQTEKRICHPNAGVLSKEELESRDGLHGK--KRMFMYVHSTE--TEKHFQELKRDVHEKPNTLFVIIADECHWGITKDKEEKPSAHNLFINEWCK-EKSPQNVVVVQISATPFNLLTQNSRLPE 369          
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Match: UPI001CF29DE5 (LOW QUALITY PROTEIN: uncharacterized protein LOC114976514 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF29DE5)

HSP 1 Score: 79.3 bits (194), Expect = 3.600e-14
Identity = 50/138 (36.23%), Postives = 78/138 (56.52%), Query Frame = 1
Query:   91 DGLDFLVLVPRFTTLQQQTAARV--------QKMGLADGAGGSIGQRVIMYQARSGSGTSKMFQRFKSESETHSKRLFCIIADECHWGATKT-----GAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQ 465
            D +DF+V   R+  L  QT  R+         K  L     G++ +R+ MY  RS   T   F++ K + +   + LF IIADECHWG TK       A++ F+N++G  ++  +NVV+L +SATP+N LT++SR+ +
Sbjct:  233 DDVDFVVYTARYRMLSDQTEKRICHPHAGVLSKEELEARHEGNVQKRMFMY-VRSAE-TDGHFEQLKRDIQDKPRTLFIIIADECHWGITKDKDQTPSAHNLFINEWGK-EQCPRNVVVLQISATPFNLLTQNSRLRE 367          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A836CLA3_9STRA3.160e-113100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
R1D1D9_EMIHU4.200e-2444.58Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A2P6MUX9_9EUKA6.560e-1641.35Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A2R5GIV1_9STRA1.680e-1540.24GREB1-like protein n=1 Tax=Hondaea fermentalgiana ... [more]
UPI00077AA7445.620e-1536.36uncharacterized protein LOC107328714 n=2 Tax=Acrop... [more]
UPI001CF3DEF05.620e-1534.97uncharacterized protein LOC114976518 n=1 Tax=Acrop... [more]
UPI00077A01451.170e-1435.66uncharacterized protein LOC107334600 n=1 Tax=Acrop... [more]
UPI00077A1F9C1.730e-1435.81uncharacterized protein LOC107334601 n=1 Tax=Acrop... [more]
UPI0009E314373.580e-1436.05uncharacterized protein LOC110051160 isoform X1 n=... [more]
UPI001CF29DE53.600e-1436.23LOW QUALITY PROTEIN: uncharacterized protein LOC11... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_140contigContig_140:208428..208913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|143593|gw1.140.40.1
Descriptioninterleukin-8 biosynthetic process
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Evalue2.39e-07
Seed ortholog192875.XP_004364454.1
Hectar predicted targeting categoryother localisation
TranscriptId143915
TrackFilteredModels1
ProteinId143593
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143593gene_15640Tribonema minus UTEX_B_3156 geneContig_140 208428..208913 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15640_1exon_15640_1Tribonema minus UTEX_B_3156 exonContig_140 208428..208913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15640CDS_15640Tribonema minus UTEX_B_3156 CDSContig_140 208428..208913 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143593Trimin1|143593|gw1.140.40.1Tribonema minus UTEX_B_3156 polypeptideContig_140 208428..208913 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15640 ID=mRNA_15640|Name=jgi.p|Trimin1|143593|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=486bp|location=Sequence derived from alignment at Contig_140:208428..208913- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCCGAGCAGGAGTGTGTGGCAGCCGCACTGGTGCGCATGACCGAGCGTGC
GCTGCTGCCTGGAGGCGGATCCCTGGAGGATGTTTTCACAGATGGCTTGG
ACTTCCTGGTTCTGGTGCCACGCTTCACCACGCTTCAGCAACAGACGGCG
GCACGCGTGCAGAAGATGGGGCTCGCAGACGGTGCGGGGGGCAGCATTGG
CCAGCGTGTGATCATGTACCAGGCGCGGAGCGGCAGTGGCACCAGCAAGA
TGTTCCAGCGCTTCAAGAGTGAGAGCGAGACGCACAGCAAGAGGCTCTTC
TGCATCATTGCGGATGAGTGCCACTGGGGTGCGACAAAAACGGGTGCGTA
CAGTCAGTTCGTAAATCAGTTCGGGGACGGGGACAAGCGGCAGAAGAACG
TCGTCATATTGCTCGTCAGCGCCACACCCTACAACTGCCTCACGCGCGAC
AGCCGCGTGACACAGCCAGACAATGTGCTCAAGTGG
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protein sequence of jgi.p|Trimin1|143593

>Trimin1|143593|gw1.140.40.1 ID=Trimin1|143593|gw1.140.40.1|Name=jgi.p|Trimin1|143593|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=162bp
PEQECVAAALVRMTERALLPGGGSLEDVFTDGLDFLVLVPRFTTLQQQTA
ARVQKMGLADGAGGSIGQRVIMYQARSGSGTSKMFQRFKSESETHSKRLF
CIIADECHWGATKTGAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRD
SRVTQPDNVLKW
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mRNA from alignment at Contig_140:208428..208913-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15640 ID=mRNA_15640|Name=jgi.p|Trimin1|143593|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=486bp|location=Sequence derived from alignment at Contig_140:208428..208913- (Tribonema minus UTEX_B_3156 )
CCCGAGCAGGAGTGTGTGGCAGCCGCACTGGTGCGCATGACCGAGCGTGC GCTGCTGCCTGGAGGCGGATCCCTGGAGGATGTTTTCACAGATGGCTTGG ACTTCCTGGTTCTGGTGCCACGCTTCACCACGCTTCAGCAACAGACGGCG GCACGCGTGCAGAAGATGGGGCTCGCAGACGGTGCGGGGGGCAGCATTGG CCAGCGTGTGATCATGTACCAGGCGCGGAGCGGCAGTGGCACCAGCAAGA TGTTCCAGCGCTTCAAGAGTGAGAGCGAGACGCACAGCAAGAGGCTCTTC TGCATCATTGCGGATGAGTGCCACTGGGGTGCGACAAAAACGGGTGCGTA CAGTCAGTTCGTAAATCAGTTCGGGGACGGGGACAAGCGGCAGAAGAACG TCGTCATATTGCTCGTCAGCGCCACACCCTACAACTGCCTCACGCGCGAC AGCCGCGTGACACAGCCAGACAATGTGCTCAAGTGG
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Coding sequence (CDS) from alignment at Contig_140:208428..208913-

>mRNA_15640 ID=mRNA_15640|Name=jgi.p|Trimin1|143593|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=486bp|location=Sequence derived from alignment at Contig_140:208428..208913- (Tribonema minus UTEX_B_3156 )
CCCGAGCAGGAGTGTGTGGCAGCCGCACTGGTGCGCATGACCGAGCGTGC
GCTGCTGCCTGGAGGCGGATCCCTGGAGGATGTTTTCACAGATGGCTTGG
ACTTCCTGGTTCTGGTGCCACGCTTCACCACGCTTCAGCAACAGACGGCG
GCACGCGTGCAGAAGATGGGGCTCGCAGACGGTGCGGGGGGCAGCATTGG
CCAGCGTGTGATCATGTACCAGGCGCGGAGCGGCAGTGGCACCAGCAAGA
TGTTCCAGCGCTTCAAGAGTGAGAGCGAGACGCACAGCAAGAGGCTCTTC
TGCATCATTGCGGATGAGTGCCACTGGGGTGCGACAAAAACGGGTGCGTA
CAGTCAGTTCGTAAATCAGTTCGGGGACGGGGACAAGCGGCAGAAGAACG
TCGTCATATTGCTCGTCAGCGCCACACCCTACAACTGCCTCACGCGCGAC
AGCCGCGTGACACAGCCAGACAATGTGCTCAAGTGG
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