mRNA_15640 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Match: A0A836CLA3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLA3_9STRA) HSP 1 Score: 327 bits (837), Expect = 3.160e-113 Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 Query: 1 PEQECVAAALVRMTERALLPGGGSLEDVFTDGLDFLVLVPRFTTLQQQTAARVQKMGLADGAGGSIGQRVIMYQARSGSGTSKMFQRFKSESETHSKRLFCIIADECHWGATKTGAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQPDNVLKW 486 PEQECVAAALVRMTERALLPGGGSLEDVFTDGLDFLVLVPRFTTLQQQTAARVQKMGLADGAGGSIGQRVIMYQARSGSGTSKMFQRFKSESETHSKRLFCIIADECHWGATKTGAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQPDNVLKW Sbjct: 1 PEQECVAAALVRMTERALLPGGGSLEDVFTDGLDFLVLVPRFTTLQQQTAARVQKMGLADGAGGSIGQRVIMYQARSGSGTSKMFQRFKSESETHSKRLFCIIADECHWGATKTGAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQPDNVLKW 162
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Match: R1D1D9_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D1D9_EMIHU) HSP 1 Score: 107 bits (268), Expect = 4.200e-24 Identity = 74/166 (44.58%), Postives = 102/166 (61.45%), Query Frame = 1 Query: 4 EQECVAAALVRMTERALLPGGGSLEDVFTDGLDFLVLVPRFTTLQQQTAARVQKMGLAD-GAGGSIGQRVIMYQARSGSGTSKMFQRFKSES-ETHSKRLFCIIADECHWGATKTGAYSQFVNQFGDGDKRQ---KNVVILLVSATPYNCLTRDSRVTQPDNVLKW 486 EQ VA AL+R T RA+L GG D FTD + FL+LVP FTTL+ QTA RV++ GL + G+ +VIM+ ++K F++FK+++ + + LF IIADECH+ T+ G S +VN D + N+V+LL SATP+NCLTR SR+T P W Sbjct: 502 EQAKVAEALLRRT-RAML--GGEAFDKFTD-MQFLILVPAFTTLKAQTAYRVRRAGLTERGSNDDEFSKVIMHSCGD---SAKYFEKFKAKAIKDNGTTLFVIIADECHYSPTRGGYQSVYVN-----DAKLLGLPNLVVLLNSATPFNCLTRKSRITGPLTSDSW 655
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Match: A0A2P6MUX9_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MUX9_9EUKA) HSP 1 Score: 84.3 bits (207), Expect = 6.560e-16 Identity = 55/133 (41.35%), Postives = 76/133 (57.14%), Query Frame = 1 Query: 91 DGLDFLVLVPRFTTLQQQTAARVQKMGLADGAGGSIGQRVIMYQARSGSGTSKM-FQRFKSESETHSKRLFCIIADECHWGATKTGAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQPDNVLKW 486 DGL V RF +L +QT+ R+++MGL +RVIMY + G SK F F + E + KRLF + DECHWG GA +VN + KNVV+LL++ATP+N T SR+ + +NV+KW Sbjct: 1741 DGLK-RVQTARFRSLMEQTSQRLREMGLEHE------RRVIMYCKK---GQSKADFDLFIDKVEKNEKRLFIFVVDECHWGINSKGANDTYVND--PRILKAKNVVVLLITATPWNMYTTGSRLKE-ENVVKW 1860
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Match: A0A2R5GIV1_9STRA (GREB1-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GIV1_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 1.680e-15 Identity = 66/164 (40.24%), Postives = 84/164 (51.22%), Query Frame = 1 Query: 1 PEQECVAAALVRMTERALLPGGGSLEDVFT-DGLDFLVLVPRFTTLQQQTAARVQKMGLADGAGGSIGQRVIMYQARSGSGTSKMFQRFKSESETHSKR-LFCIIADECHWGATKTGAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQPDNVLKW 486 PEQ VA L R RAL P + + V D + F+VL P F +LQ QTA RV++ L +G RV+ + S R E+E R L IIADECH+ TK GA+ +N + KNV+ LLVSATP N LT SR+ P NV+ W Sbjct: 2541 PEQRDVAEELFRKAGRALFPEQETPDWVSRFDKVSFVVLTPNFNSLQSQTADRVRRAMLENG-------RVLKHTKVPHSVMED--HRAWMEAEARDPRTLLVIIADECHYAPTKNGAHDWLLN---NKHLNGKNVLRLLVSATPQNVLTNKSRIA-PQNVVCW 2691
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Match: UPI00077AA744 (uncharacterized protein LOC107328714 n=2 Tax=Acropora TaxID=6127 RepID=UPI00077AA744) HSP 1 Score: 81.6 bits (200), Expect = 5.620e-15 Identity = 52/143 (36.36%), Postives = 80/143 (55.94%), Query Frame = 1 Query: 91 DGLDFLVLVPRFTTLQQQTAARV--------QKMGLADGAGGSIGQRVIMYQARSGSGTSKMFQRFKSESETHSKRLFCIIADECHWGATKT-----GAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQPDNVL 480 D +DF+V R+ L QT R+ K L G++ +R+ MY RS T++ F++ K E + LF IIADECHWG TK A++ F+N++G + +NVV+L +SATP+N LT++SR+ + +L Sbjct: 242 DDVDFVVYTARYRMLSDQTEKRICHPHAGVLSKEELEARHEGNVQKRMFMY-IRSAE-TNEHFKQLKREIHEKPRTLFIIIADECHWGITKDKDQTLSAHNLFINEWGK-ENSPRNVVVLQISATPFNLLTQNSRLPEVKCIL 381
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Match: UPI001CF3DEF0 (uncharacterized protein LOC114976518 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF3DEF0) HSP 1 Score: 81.6 bits (200), Expect = 5.620e-15 Identity = 50/143 (34.97%), Postives = 79/143 (55.24%), Query Frame = 1 Query: 91 DGLDFLVLVPRFTTLQQQTAARV--------QKMGLADGAGGSIGQRVIMYQARSGSGTSKMFQRFKSESETHSKRLFCIIADECHWGATKT-----GAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQPDNVL 480 D +DF+V ++ L QT R+ K L G++ +R+ MY T+ F++ K + E + LF IIADECHWG TK A++ F+N++G +K +NVV+L +SATP+N LT++SR+ + +L Sbjct: 234 DDVDFVVYTAKYKMLSDQTEKRICHPHAGVLSKEELEARHEGNVKKRMFMYSRSEV--TNGHFKQLKRDIEDKPRTLFIIIADECHWGITKDKEQTPSAHNLFINEWGK-EKSPRNVVVLQISATPFNLLTQNSRLPEVKCIL 373
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Match: UPI00077A0145 (uncharacterized protein LOC107334600 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A0145) HSP 1 Score: 80.5 bits (197), Expect = 1.170e-14 Identity = 51/143 (35.66%), Postives = 79/143 (55.24%), Query Frame = 1 Query: 91 DGLDFLVLVPRFTTLQQQTAARV--------QKMGLADGAGGSIGQRVIMYQARSGSGTSKMFQRFKSESETHSKRLFCIIADECHWGATKT-----GAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQPDNVL 480 D +DF+V R+ L QT R+ K L G++ +R+ MY RS T F++ K + + + LF IIADECHWG TK A++ F+N++G + +NVV+L +SATP+N LT++SR+ + +L Sbjct: 29 DDVDFVVYTARYRMLSDQTEKRICHPHAGVLSKEELEARHEGNVQKRMFMY-VRSAE-TDGHFEQLKRDIQDKPRTLFIIIADECHWGITKDKDQTLSAHNLFINEWGK-ENSPRNVVVLQISATPFNLLTQNSRLPEVKCIL 168
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Match: UPI00077A1F9C (uncharacterized protein LOC107334601 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A1F9C) HSP 1 Score: 80.1 bits (196), Expect = 1.730e-14 Identity = 53/148 (35.81%), Postives = 82/148 (55.41%), Query Frame = 1 Query: 61 GGGSLEDVFTDGLDFLVLVPRFTTLQQQTAARV--------QKMGLADGAGGSIGQRVIMYQARSGSGTSKMFQRFKSESETHSKRLFCIIADECHWGATKT-----GAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQ 465 G L + F D +DF+V R+ L QT R+ K L G++ +R+ MY RS T F++ K + + + LF IIADECHWG TK A++ F+N++G ++ +NVV+L +SATP+N LT++SR+ + Sbjct: 174 GIDELSNAFDD-VDFVVYTARYRMLSDQTEKRICHPHAGVLSKEELEARHEGNVQKRMFMY-VRSAE-TDGHFEQLKRDIQDKPRTLFIIIADECHWGITKDKDQTPSAHNLFINEWGK-EQSPRNVVVLQISATPFNLLTQNSRLRE 317
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Match: UPI0009E31437 (uncharacterized protein LOC110051160 isoform X1 n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E31437) HSP 1 Score: 79.3 bits (194), Expect = 3.580e-14 Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = 1 Query: 70 SLEDVFTDGLDFLVLVPRFTTLQQQTAARV----------QKMGLADGAGGSIGQRVIMYQARSGSGTSKMFQRFKSESETHSKRLFCIIADECHWGATKT-----GAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQ 465 SL DVF D ++F+V R+ L QT R+ +++ DG G +R+ MY + T K FQ K + LF IIADECHWG TK A++ F+N++ +K +NVV++ +SATP+N LT++SR+ + Sbjct: 229 SLSDVFND-VEFVVYTARYRMLSDQTEKRICHPNAGVLSKEELESRDGLHGK--KRMFMYVHSTE--TEKHFQELKRDVHEKPNTLFVIIADECHWGITKDKEEKPSAHNLFINEWCK-EKSPQNVVVVQISATPFNLLTQNSRLPE 369
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Match: UPI001CF29DE5 (LOW QUALITY PROTEIN: uncharacterized protein LOC114976514 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF29DE5) HSP 1 Score: 79.3 bits (194), Expect = 3.600e-14 Identity = 50/138 (36.23%), Postives = 78/138 (56.52%), Query Frame = 1 Query: 91 DGLDFLVLVPRFTTLQQQTAARV--------QKMGLADGAGGSIGQRVIMYQARSGSGTSKMFQRFKSESETHSKRLFCIIADECHWGATKT-----GAYSQFVNQFGDGDKRQKNVVILLVSATPYNCLTRDSRVTQ 465 D +DF+V R+ L QT R+ K L G++ +R+ MY RS T F++ K + + + LF IIADECHWG TK A++ F+N++G ++ +NVV+L +SATP+N LT++SR+ + Sbjct: 233 DDVDFVVYTARYRMLSDQTEKRICHPHAGVLSKEELEARHEGNVQKRMFMY-VRSAE-TDGHFEQLKRDIQDKPRTLFIIIADECHWGITKDKDQTPSAHNLFINEWGK-EQCPRNVVVLQISATPFNLLTQNSRLRE 367 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|143593 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15640 ID=mRNA_15640|Name=jgi.p|Trimin1|143593|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=486bp|location=Sequence derived from alignment at Contig_140:208428..208913- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CCCGAGCAGGAGTGTGTGGCAGCCGCACTGGTGCGCATGACCGAGCGTGCback to top protein sequence of jgi.p|Trimin1|143593 >Trimin1|143593|gw1.140.40.1 ID=Trimin1|143593|gw1.140.40.1|Name=jgi.p|Trimin1|143593|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=162bp PEQECVAAALVRMTERALLPGGGSLEDVFTDGLDFLVLVPRFTTLQQQTAback to top mRNA from alignment at Contig_140:208428..208913- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15640 ID=mRNA_15640|Name=jgi.p|Trimin1|143593|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=486bp|location=Sequence derived from alignment at Contig_140:208428..208913- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_140:208428..208913- >mRNA_15640 ID=mRNA_15640|Name=jgi.p|Trimin1|143593|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=486bp|location=Sequence derived from alignment at Contig_140:208428..208913- (Tribonema minus UTEX_B_3156 )back to top |