mRNA_15609 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175103
Unique NamemRNA_15609
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175103 vs. uniprot
Match: A0A835Z1W0_9STRA (Uncharacterized protein n=8 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1W0_9STRA)

HSP 1 Score: 562 bits (1448), Expect = 3.160e-201
Identity = 292/310 (94.19%), Postives = 295/310 (95.16%), Query Frame = 1 
Query:    1 MGSVLDVIRLVNPEIPSNQASSTFKRLATELPDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVEVSRELPAELQLATPEQRTLFVTSWMHGRRLALIDREKTQQLALIITN----ECFGVADARDRIAFGDLVRHVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR 918
            MGSVLDVIRLVNPEIPSNQASSTFKRLA ELPDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLV+EIEGRCRALQATEVGRAAQDFLIGDGSV+VSRELPAELQLATPEQRTLFV SWMH RRLALIDREKTQQLALI         FGVADARDRIAFGDLVR VVQPPAHD GALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRT T+LNR
Sbjct:   18 MGSVLDVIRLVNPEIPSNQASSTFKRLALELPDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVNEIEGRCRALQATEVGRAAQDFLIGDGSVQVSRELPAELQLATPEQRTLFVASWMHERRLALIDREKTQQLALIKNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDAGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTATLLNR 327
[Close]
BLAST of jgi.p|Trimin1|175103 vs. uniprot
Match: A0A835ZAN0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAN0_9STRA)

HSP 1 Score: 483 bits (1244), Expect = 1.370e-160
Identity = 256/306 (83.66%), Postives = 265/306 (86.60%), Query Frame = 1 
Query:    1 MGSVLDVIRLVNPEIPSNQASSTFKRLATELPDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVEVSRELPAELQLATPEQRTLFVTSWMHGRRLALIDREKTQQLALIITNECFGVADARDRIAFGDLVRHVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR 918
            MGSVLDVIRLVNPEIPSNQASSTFKR+ATELPD+ASSC QLRINGNGKLTPCADARTLVEIV SLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATE+GRAAQDFLIGDGS +VSR+LPAELQLATPEQRT F                              GVADARDRIAFGDLVR VVQPPAHDDGALIVARPMSEDDPSVATP A VAHRGPEISM SVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRN+ FRG++FAENTYWKR+QD MEEAI TVTMLNR
Sbjct:  150 MGSVLDVIRLVNPEIPSNQASSTFKRVATELPDMASSCCQLRINGNGKLTPCADARTLVEIVGSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEMGRAAQDFLIGDGSDQVSRDLPAELQLATPEQRTFF------------------------------GVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPSAHVAHRGPEISMQSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNITFRGQIFAENTYWKRNQDHMEEAISTVTMLNR 425
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BLAST of jgi.p|Trimin1|175103 vs. uniprot
Match: A0A835YN01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN01_9STRA)

HSP 1 Score: 382 bits (982), Expect = 1.110e-131
Identity = 212/306 (69.28%), Postives = 216/306 (70.59%), Query Frame = 1 
Query:    1 MGSVLDVIRLVNPEIPSNQASSTFKRLATELPDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVEVSRELPAELQLATPEQRTLFVTSWMHGRRLALIDREKTQQLALIITNECFGVADARDRIAFGDLVRHVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR 918
            MGSVLDVIRLVNPEIPSNQAS TFKRLATELPDVASSCRQLRI GNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATE                                                                                      PPAHDDGALIVARPMSEDDPSV TPLAQVAH+GPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRN+PFRG++FAENTYWKRDQDLMEEAI TVTMLNR
Sbjct:   18 MGSVLDVIRLVNPEIPSNQASFTFKRLATELPDVASSCRQLRIYGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATE--------------------------------------------------------------------------------------PPAHDDGALIVARPMSEDDPSVPTPLAQVAHQGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNIPFRGQIFAENTYWKRDQDLMEEAIHTVTMLNR 237
[Close]
BLAST of jgi.p|Trimin1|175103 vs. uniprot
Match: A0A836CKR7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKR7_9STRA)

HSP 1 Score: 374 bits (959), Expect = 5.170e-128
Identity = 194/231 (83.98%), Postives = 204/231 (88.31%), Query Frame = 1 
Query:    1 MGSVLDVIRLVNPEIPSNQASSTFKRLATELPDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVEVSRELPAELQLATPEQRTLFVTSWMHGRRLALIDREKTQQLALIITN----ECFGVADARDRIAFGDLVRHVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPE 681
            MGSVLDVIRLVNPE PSNQ  STFKRLATELPDVASSC QLR+N NGKLTPCADARTLV+ VWSLPGKPA AFRRTSATTVCR++GGDVSLVDEIEGRCRALQATEVGRAA+DFLIGDG V+VSRELP ELQL T EQRTL V +WMH RRLALID EKTQQLALI         FGVADARDR+AFGDL R VVQPPAHDD ALIVARPMSEDDP+VATPLAQVAHRGP+
Sbjct:   18 MGSVLDVIRLVNPETPSNQVPSTFKRLATELPDVASSCCQLRMNRNGKLTPCADARTLVQNVWSLPGKPACAFRRTSATTVCRIVGGDVSLVDEIEGRCRALQATEVGRAARDFLIGDGGVQVSRELPPELQLGTREQRTLCVANWMHERRLALIDHEKTQQLALIKNGFDLVGSFGVADARDRMAFGDLARRVVQPPAHDDSALIVARPMSEDDPTVATPLAQVAHRGPK 248
[Close]
BLAST of jgi.p|Trimin1|175103 vs. uniprot
Match: A0A836CBT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT4_9STRA)

HSP 1 Score: 383 bits (984), Expect = 1.930e-122
Identity = 209/261 (80.08%), Postives = 216/261 (82.76%), Query Frame = 1 
Query:  148 TPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVEVSRELPAELQLATPEQRTLFVTSWMHGRRLALIDREKTQQLALIITN----ECFGVADARDRIAFGDLVRHVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR 918
            TPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIE  CRALQATEVGR AQDFLIGDGSV+VSRELPAELQLATPEQRTLFV SW+H RRLALIDREKTQQLALI         FGVADARDRIAFGDLVR VVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGT          ++  + G                ++ AENTYWKRDQDLMEEAIRTVTMLNR
Sbjct:    4 TPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEWWCRALQATEVGRTAQDFLIGDGSVKVSRELPAELQLATPEQRTLFVASWIHERRLALIDREKTQQLALIKNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGT----------VFDREEGEGFV----------HHQICAENTYWKRDQDLMEEAIRTVTMLNR 244
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BLAST of jgi.p|Trimin1|175103 vs. uniprot
Match: A0A836CN02_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN02_9STRA)

HSP 1 Score: 286 bits (733), Expect = 6.200e-95
Identity = 151/164 (92.07%), Postives = 152/164 (92.68%), Query Frame = 1 
Query:  439 MHGRRLALIDREKTQQLALIITN----ECFGVADARDRIAFGDLVRHVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR 918
            MH RRLALIDREKTQQLALI         FGVADARDRIAFGDLVR VVQPPAHDDGALIVARPM EDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAG+ECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR
Sbjct:    1 MHERRLALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLNR 164
[Close]
BLAST of jgi.p|Trimin1|175103 vs. uniprot
Match: A0A835YX96_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX96_9STRA)

HSP 1 Score: 262 bits (670), Expect = 7.790e-83
Identity = 153/324 (47.22%), Postives = 196/324 (60.49%), Query Frame = 1 
Query:    1 MGSVLDVIRLVNPEIPSNQASSTFKRLATELPDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGD--------GSVEVSRELPAELQLATPEQRTLFVTSWMH--GRRLALIDREKTQQLALIITN-------------ECFGVADARDRIAFGDLVRHVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTV 903
            +GSV+DVIR+VNP      A+     L  +   +  S + +RING GK TPCA AR LVE+V+ LPGK AR FRR SATTVCRVLGGD+S+V E+E R  ALQ TE GRAAQ+FL+ D        G V   R LP EL LA+  +R+ +  +W         LI + K  + AL                    GVAD RDRI F D VR  V     D  A++ A  +  DDP+V TP  +  +RG EISMH+VA+EMGV+I   +E  IGKK++ALY  +YG AAAA+IPKR++ FRG++F  N YWKRD DLM  A+++V
Sbjct:   18 LGSVIDVIRMVNPNQERTAATKAVAYLTADDETLRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCRVLGGDLSIVGEVEARHHALQQTEGGRAAQEFLLRDDESSATGCGQVGQVRALPVELTLASQAERSAYFQAWSKRTNEEGDLILKRKRDEAALAAKKARAQFAVESYELLRTMGVADDRDRITFSDAVRRAVGDGGGDAEAVVEALAVGIDDPAVPTPECEPFYRGDEISMHTVASEMGVKIPHNSEGRIGKKMRALYRDRYGEAAAASIPKRSIEFRGQMFPANAYWKRDADLMRAAVQSV 341
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BLAST of jgi.p|Trimin1|175103 vs. uniprot
Match: A0A835YWG0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG0_9STRA)

HSP 1 Score: 253 bits (646), Expect = 2.100e-79
Identity = 156/318 (49.06%), Postives = 197/318 (61.95%), Query Frame = 1 
Query:    4 GSVLDVIRLVNPEIPSNQASSTFKRLATEL-PDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVEVSRELPAELQLATPEQRTLFVTSWMHGRR---LALIDREKTQQLALIITNEC--------------FGVADARDRIAFGDLVRHVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTV 903
            GSV+DVI++V     ++ AS+  KRL  ++   + + C QLRING GKLT CADA+TLVEIVWSLPGK AR FRRTSA TVCRVLGGD+S+V E+E R  ALQ+T  GRAAQDFL+GD S     E PAE       +RTL  T     RR    A +D  + +  A I T +                G AD RDRI F D VR +V       GA++ A  +  DDP+V T      +RG EISMHSV+++  +RI  G E  +G+ VKALY  +YG AAAA + KRNVPF G+++ ENTYW RD+DLM++AI  V
Sbjct:   19 GSVIDVIKIVQ-SCNASDASTYCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLLGDESS--GSEAPAE-------ERTLARTIGEVMRRNNKQAELDLSRMRDNASIATKKACAEFAVDSYEMLRSMGAADDRDRITFSDAVRRIVAEGGGAAGAIVEAGAVPADDPTVPTSDCDAYYRGEEISMHSVSSKYSLRIGNGREGAVGRAVKALYLKRYGEAAAAKMVKRNVPFHGQIYGENTYWARDEDLMKQAIVAV 326
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BLAST of jgi.p|Trimin1|175103 vs. uniprot
Match: A0A835Z3L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L4_9STRA)

HSP 1 Score: 251 bits (642), Expect = 7.010e-79
Identity = 152/310 (49.03%), Postives = 196/310 (63.23%), Query Frame = 1 
Query:    4 GSVLDVIRLVNPEIPSNQASSTFKRLATEL-PDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVEVSRE----LPAELQLATPEQRTLFVTSWMHGRRLALIDREKTQQLALIITNECF---GVADARDRIAFGDLVRHVVQPPAHDDG--ALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTV 903
            GSV+DVI++V     ++ AS+  KRL  ++  D+ + C QLRIN  G+LTPCADA+TLVEIVWSLPGK AR FRR SA  VCRVLGGD+S+V E+E R  ALQ TE GRAAQ FL+ D    V  E    LP EL LA   Q++ +  + M  R  A I  +K +    +   E     G AD RD I F D VR  V     D G  A++ AR ++ DDP++ TP     +RG EISMH+VA EM V+I    E  IGK++KALY  +YG AAAA IP RN+ FRG+++  N+YW RD DLM+ A+++V
Sbjct:   19 GSVIDVIKIVQ-SCNASDASTYCKRLLDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLLEDSESSVGGEMISGLPLELALANETQKSAYFEARM--REEAAIATKKARAQFAVEGYELLRSMGAADHRDCITFSDAVRRAVT----DGGGAAVVEARALAADDPTIPTPQCDPFYRGEEISMHTVAHEMRVKIPEQGEGRIGKRMKALYTERYGDAAAANIPTRNIEFRGQIWPANSYWARDADLMKRAVQSV 321
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BLAST of jgi.p|Trimin1|175103 vs. uniprot
Match: B5LWM4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM4_9PHYC)

HSP 1 Score: 183 bits (465), Expect = 1.080e-51
Identity = 127/329 (38.60%), Postives = 176/329 (53.50%), Query Frame = 1 
Query:    1 MGSVLDVIRLVNPEIPSNQASSTFKRLATELPDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVEV----------SRELPAELQLATPEQRTLFVTSWMHGRRLALIDREKTQQLALIITNECFGVADARDRIAFGDLVR----------HVVQPPAHDDGALI--VARPMSEDDPS-----VATPLAQVAHRGPEISMHSVAAEMGVRI-KAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTV 903
            +GSV+D IR+V  E  S+ A+++  RL    P +     QL++NG GK TP ADA+TL+EIVW LPG+ A AFR      +CR+LGGD SLV EIE R   L  TE GRA Q+F + D  V +          S E P+  + AT E++  F ++ ++    A++  E           E  G    RD I FGD VR          +++     DD  +I  VARP+ +   S     +ATP    + RG E S+ + AA++G+ + + G E  IGK++   Y  +YG  A   IPKR   +RGK F EN YW RD DL++EAIR V
Sbjct:   38 LGSVIDTIRMVL-ECDSSNANTSLGRLVLSHPGLGEKYTQLKVNGRGKPTPVADAKTLIEIVWLLPGRRAHAFRCQRVGKICRLLGGDTSLVSEIEARHATLTGTEEGRATQEFFLNDNHVTIDQPDQVKELRSGEEPSWFKNATAEEKRAFASTMVNK---AIVSEEVEMYDFCKAKLESVGQFTTRDMIEFGDRVRDAQRRALRAGNMMTSTPVDDTVVISAVARPVDDTIDSATGLPLATPECSESVRGVETSICNEAAKLGICVGEKGGE--IGKELIRRYTKRYGVEAGLNIPKRPTTYRGKPFNENCYWSRDADLVQEAIRIV 360
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175103 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1W0_9STRA3.160e-20194.19Uncharacterized protein n=8 Tax=Tribonema minus Ta... [more]
A0A835ZAN0_9STRA1.370e-16083.66Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YN01_9STRA1.110e-13169.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CKR7_9STRA5.170e-12883.98Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A836CBT4_9STRA1.930e-12280.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CN02_9STRA6.200e-9592.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YX96_9STRA7.790e-8347.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YWG0_9STRA2.100e-7949.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3L4_9STRA7.010e-7949.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B5LWM4_9PHYC1.080e-5138.60Uncharacterized protein n=1 Tax=Feldmannia species... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_121contigContig_121:373617..374556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175103|e_gw1.121.30.1
Max annot lvl2880.D8LP49|-
EggNOG OGs2EUDG@1|root,2SWJG@2759|Eukaryota
Evalue2.04e-44
Seed ortholog2880.D8LP49
Hectar predicted targeting categoryother localisation
TranscriptId175425
TrackFilteredModels1
ProteinId175103
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175103gene_15609Tribonema minus UTEX_B_3156 geneContig_121 373617..374556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175103Trimin1|175103|e_gw1.121.30.1Tribonema minus UTEX_B_3156 polypeptideContig_121 373617..374556 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15609_2exon_15609_2Tribonema minus UTEX_B_3156 exonContig_121 373617..374025 -
exon_15609_1exon_15609_1Tribonema minus UTEX_B_3156 exonContig_121 374045..374556 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15609CDS_15609Tribonema minus UTEX_B_3156 CDSContig_121 374045..374556 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15609 ID=mRNA_15609|Name=jgi.p|Trimin1|175103|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=921bp|location=Sequence derived from alignment at Contig_121:373617..374556- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAGCGTGCTTGATGTCATACGCCTCGTGAATCCTGAAATACCCTC
AAACCAGGCGTCTTCCACCTTCAAGAGGCTGGCAACAGAGTTGCCAGACG
TGGCGTCGTCCTGCCGCCAACTCCGAATCAACGGCAATGGCAAACTCACT
CCGTGCGCTGACGCACGAACACTGGTGGAAATTGTTTGGTCGCTGCCTGG
CAAGCCAGCACGTGCATTTCGGCGTACTTCGGCGACGACTGTATGCCGCG
TTCTTGGCGGGGATGTCAGCTTGGTCGATGAGATTGAGGGGCGGTGCCGT
GCGCTGCAGGCGACAGAAGTGGGTCGCGCCGCGCAAGACTTTCTGATCGG
TGACGGAAGCGTCGAAGTATCGAGGGAGCTGCCTGCGGAGCTACAGCTGG
CCACTCCCGAGCAGCGGACCTTGTTTGTTACGAGTTGGATGCATGGGCGC
AGACTGGCGCTGATTGACCGTGAGAAGACTCAGCAGCTGGCTTTGATCAT
CACGAATGAATGTTTCGGTGTCGCTGACGCGCGTGACAGGATCGCCTTCG
GAGACCTGGTGCGCCATGTTGTACAGCCCCCTGCACATGATGACGGCGCA
CTCATTGTCGCACGGCCGATGAGCGAGGATGACCCGAGCGTGGCGACGCC
CTTGGCGCAGGTTGCGCACCGAGGCCCCGAAATAAGCATGCACTCGGTCG
CAGCCGAGATGGGTGTCCGCATCAAGGCAGGCACCGAGTGTTTGATCGGG
AAGAAGGTGAAGGCTTTGTATGCCATCAAGTACGGCACGGCGGCGGCGGC
GGCGATCCCAAAGCGAAATGTTCCTTTTCGGGGCAAGGTATTCGCTGAAA
ACACATACTGGAAACGCGATCAGGACCTCATGGAGGAGGCGATCCGCACG
GTAACCATGCTTAACCGCTGA
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protein sequence of jgi.p|Trimin1|175103

>Trimin1|175103|e_gw1.121.30.1 ID=Trimin1|175103|e_gw1.121.30.1|Name=jgi.p|Trimin1|175103|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=307bp
MGSVLDVIRLVNPEIPSNQASSTFKRLATELPDVASSCRQLRINGNGKLT
PCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCR
ALQATEVGRAAQDFLIGDGSVEVSRELPAELQLATPEQRTLFVTSWMHGR
RLALIDREKTQQLALIITNECFGVADARDRIAFGDLVRHVVQPPAHDDGA
LIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIG
KKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRT
VTMLNR*
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mRNA from alignment at Contig_121:373617..374556-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15609 ID=mRNA_15609|Name=jgi.p|Trimin1|175103|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=940bp|location=Sequence derived from alignment at Contig_121:373617..374556- (Tribonema minus UTEX_B_3156 )
ATGGGCAGCGTGCTTGATGTCATACGCCTCGTGAATCCTGAAATACCCTC
AAACCAGGCGTCTTCCACCTTCAAGAGGCTGGCAACAGAGTTGCCAGACG
TGGCGTCGTCCTGCCGCCAACTCCGAATCAACGGCAATGGCAAACTCACT
CCGTGCGCTGACGCACGAACACTGGTGGAAATTGTTTGGTCGCTGCCTGG
CAAGCCAGCACGTGCATTTCGGCGTACTTCGGCGACGACTGTATGCCGCG
TTCTTGGCGGGGATGTCAGCTTGGTCGATGAGATTGAGGGGCGGTGCCGT
GCGCTGCAGGCGACAGAAGTGGGTCGCGCCGCGCAAGACTTTCTGATCGG
TGACGGAAGCGTCGAAGTATCGAGGGAGCTGCCTGCGGAGCTACAGCTGG
CCACTCCCGAGCAGCGGACCTTGTTTGTTACGAGTTGGATGCATGGGCGC
AGACTGGCGCTGATTGACCGTGAGAAGACTCAGCAGCTGGCTTTGATCAT
CACGAATGAATGGTTTTGACCTCCTCGGCAGTTTCGGTGTCGCTGACGCG
CGTGACAGGATCGCCTTCGGAGACCTGGTGCGCCATGTTGTACAGCCCCC
TGCACATGATGACGGCGCACTCATTGTCGCACGGCCGATGAGCGAGGATG
ACCCGAGCGTGGCGACGCCCTTGGCGCAGGTTGCGCACCGAGGCCCCGAA
ATAAGCATGCACTCGGTCGCAGCCGAGATGGGTGTCCGCATCAAGGCAGG
CACCGAGTGTTTGATCGGGAAGAAGGTGAAGGCTTTGTATGCCATCAAGT
ACGGCACGGCGGCGGCGGCGGCGATCCCAAAGCGAAATGTTCCTTTTCGG
GGCAAGGTATTCGCTGAAAACACATACTGGAAACGCGATCAGGACCTCAT
GGAGGAGGCGATCCGCACGGTAACCATGCTTAACCGCTGA
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Coding sequence (CDS) from alignment at Contig_121:373617..374556-

>mRNA_15609 ID=mRNA_15609|Name=jgi.p|Trimin1|175103|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=921bp|location=Sequence derived from alignment at Contig_121:373617..374556- (Tribonema minus UTEX_B_3156 )
ATGGGCAGCGTGCTTGATGTCATACGCCTCGTGAATCCTGAAATACCCTC
AAACCAGGCGTCTTCCACCTTCAAGAGGCTGGCAACAGAGTTGCCAGACG
TGGCGTCGTCCTGCCGCCAACTCCGAATCAACGGCAATGGCAAACTCACT
CCGTGCGCTGACGCACGAACACTGGTGGAAATTGTTTGGTCGCTGCCTGG
CAAGCCAGCACGTGCATTTCGGCGTACTTCGGCGACGACTGTATGCCGCG
TTCTTGGCGGGGATGTCAGCTTGGTCGATGAGATTGAGGGGCGGTGCCGT
GCGCTGCAGGCGACAGAAGTGGGTCGCGCCGCGCAAGACTTTCTGATCGG
TGACGGAAGCGTCGAAGTATCGAGGGAGCTGCCTGCGGAGCTACAGCTGG
CCACTCCCGAGCAGCGGACCTTGTTTGTTACGAGTTGGATGCATGGGCGC
AGACTGGCGCTGATTGACCGTGAGAAGACTCAGCAGCTGGCTTTGATCAT
CACGAATGAATGTTTCGGTGTCGCTGACGCGCGTGACAGGATCGCCTTCG
GAGACCTGGTGCGCCATGTTGTACAGCCCCCTGCACATGATGACGGCGCA
CTCATTGTCGCACGGCCGATGAGCGAGGATGACCCGAGCGTGGCGACGCC
CTTGGCGCAGGTTGCGCACCGAGGCCCCGAAATAAGCATGCACTCGGTCG
CAGCCGAGATGGGTGTCCGCATCAAGGCAGGCACCGAGTGTTTGATCGGG
AAGAAGGTGAAGGCTTTGTATGCCATCAAGTACGGCACGGCGGCGGCGGC
GGCGATCCCAAAGCGAAATGTTCCTTTTCGGGGCAAGGTATTCGCTGAAA
ACACATACTGGAAACGCGATCAGGACCTCATGGAGGAGGCGATCCGCACG
GTAACCATGCTTAACCGCTGA
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