mRNA_15550 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133702
Unique NamemRNA_15550
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|133702 vs. uniprot
Match: A0A836CNQ0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNQ0_9STRA)

HSP 1 Score: 224 bits (571), Expect = 3.490e-74
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1
Query:    1 VIVAVGVIIALILVLALSNNLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTLEISDFNDNPVAEAFHYIFGWILVGVGVLYFFMGLARLHKVR 345
            VIVAVGVIIALILVLALSNNLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTLEISDFNDNPVAEAFHYIFGWILVGVGVLYFFMGLARLHKVR
Sbjct:    1 VIVAVGVIIALILVLALSNNLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTLEISDFNDNPVAEAFHYIFGWILVGVGVLYFFMGLARLHKVR 115          
BLAST of jgi.p|Trimin1|133702 vs. uniprot
Match: D8LMH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMH6_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.410e-17
Identity = 49/117 (41.88%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    1 VIVAVGVIIALILVLALSNNLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTLEISDFNDNPVAEAFHYI--FGWILVGVGVLYFFMGLARLHKVR 345
            VI A+GV +A  +VL    +LS    AVR Y I+FC+ II+AELEW + ++   +L  W  RG++Y+FVG+L LE  D     +     YI    WI+VG+G LYF +GL  + ++R
Sbjct:   27 VIAALGVGVAQGMVLGYHKDLSPESVAVRCYNILFCMLIIMAELEWTTTVREMFVLHSWIPRGVVYSFVGVLVLEEEDEKGLDLGGFGLYITIIAWIMVGIGALYFLLGLCCVKRIR 143          
BLAST of jgi.p|Trimin1|133702 vs. uniprot
Match: A0A6H5JBP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBP3_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.570e-17
Identity = 50/117 (42.74%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    1 VIVAVGVIIALILVLALSNNLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTLEISDFNDNPVAEAFHYI--FGWILVGVGVLYFFMGLARLHKVR 345
            VI A+GV +A  +VLA   +LS    AVR Y I+FC+ II+AELEW + ++   +L  W  RG++Y+FVG+L LE  D     +     YI    WI+VG+G LYF +GL  + ++R
Sbjct:   82 VIAALGVGVAQGMVLAYHKDLSPESVAVRCYNILFCMLIIMAELEWTTTVREMFVLHSWIPRGVVYSFVGVLVLEEEDEKGLDLGGFGLYITIVAWIMVGIGALYFLLGLCCVKRIR 198          
BLAST of jgi.p|Trimin1|133702 vs. uniprot
Match: A0A7S1FP16_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FP16_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.060e-16
Identity = 41/109 (37.61%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   58 NLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTLEISDFNDNPVAEAFHY-------------IFGWILVGVGVLYFFMGLARLHKVR 345
            N   +E A++ Y +VFC+ I+LAELEWP  +K + +L++WP RG+LY+F+G+L +E S      +AE   +             +   +LV  G LYF MGL  ++K+R
Sbjct:  282 NRDLIEVAIQCYLVVFCLTIVLAELEWPGPIKRSNILQFWPFRGILYSFIGVLGMEESIVKPRTLAEGTTWSSSPVFIAHMALKVSAMVLVVTGCLYFIMGLLCINKIR 390          
BLAST of jgi.p|Trimin1|133702 vs. uniprot
Match: A0A4D9D1W9_9STRA (Cryptochrome DASH n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1W9_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.250e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = 1
Query:   55 NNLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTL--EISDFNDNPVAEAFHYIFGWILVGVGVLYFFMGLARLHKVR 345
            + LS +  A+RVY IVF IG++  EL W   +++  LL+ W  RG +YTFVGLL++  E+       +  AF Y  G  L+G+GVLYF MG+  L  VR
Sbjct:  606 HGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQEVEHEARINIVNAFIYCAGLGLIGLGVLYFVMGVFCLKGVR 704          
BLAST of jgi.p|Trimin1|133702 vs. uniprot
Match: W7TYB2_9STRA (Golgi apparatus membrane protein TVP15 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYB2_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.150e-14
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 1
Query:   55 NNLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTL--EISDFNDNPVAEAFHYIFGWILVGVGVLYFFMGLARLHKVR 345
            + LS +  A+RVY IVF IG++  EL W   +++  LL+ W  RG +YTFVGLL++  E+       +   F Y  G  L+G+GVLYF MG+  L  VR
Sbjct:  138 HGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQEVEHEARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVR 236          
BLAST of jgi.p|Trimin1|133702 vs. uniprot
Match: A0A7R9WMH7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WMH7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.580e-13
Identity = 41/105 (39.05%), Postives = 60/105 (57.14%), Query Frame = 1
Query:   55 NNLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTLEISDFNDN---------PVAEAFHYIFGWILVGVGVLYFFMGLARLHKV 342
              LS V++ +RVY I  C  I++ ELEW S+++ + LLR W  RGL+Y FVG+L +E  + + +          VA  F  +   I+VGVG LYF MG+  +  V
Sbjct:   87 KTLSLVDYVLRVYIIALCAMIVMNELEWTSVIRESRLLRNWLTRGLIYAFVGVLGIEQYEASPSGRHDDSAHFDVAMNFIRVVSNIMVGVGGLYFVMGICCMQLV 191          
BLAST of jgi.p|Trimin1|133702 vs. uniprot
Match: A0A7S4NFG8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NFG8_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.020e-10
Identity = 34/110 (30.91%), Postives = 59/110 (53.64%), Query Frame = 1
Query:   58 NLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTLE--------------ISDFNDNPVAEAFHYIFGWILVGVGVLYFFMGLARLHKVR 345
             +  ++  +RVY I+F +  +LAE+E P I+K+   L+ W +RGL+Y+F+GL+  E              +    +  +   F  +  W +VGVG+LY  MG+  L K++
Sbjct:   94 KIGILQCCLRVYMILFTLVFVLAEVEMPFIVKHVASLQNWVLRGLMYSFIGLIGAEEARSVVVYKAVKGKLKTGMNTKMVSLFIEVASWAMVGVGLLYLLMGILCLKKIK 203          
BLAST of jgi.p|Trimin1|133702 vs. uniprot
Match: A0A7S2KE92_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KE92_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.810e-9
Identity = 38/113 (33.63%), Postives = 62/113 (54.87%), Query Frame = 1
Query:   52 SNNLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTLEIS-----DFN---DNPV-------AEAFHYIFGWILVGVGVLYFFMGLARLHKVR 345
               +  V+ A+RVY  +FC+G+I+AELE   ++    LL  W VRG++Y+F+G++ +E S     D N   D+ V       A  F  +  + +  +GVLYF MG   + ++R
Sbjct:  160 EGEIGPVQMALRVYMTLFCVGVIVAELEC-LLINRMPLLHSWLVRGIVYSFLGIVGMEESVAVKFDLNNDDDSSVPTTREGHASLFIKLSSYAMTALGVLYFLMGCLCMRRLR 271          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133702 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A836CNQ0_9STRA3.490e-74100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LMH6_ECTSI1.410e-1741.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBP3_9PHAE1.570e-1742.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1FP16_9STRA3.060e-1637.61Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A4D9D1W9_9STRA1.250e-1443.43Cryptochrome DASH n=1 Tax=Nannochloropsis salina C... [more]
W7TYB2_9STRA2.150e-1442.42Golgi apparatus membrane protein TVP15 n=1 Tax=Nan... [more]
A0A7R9WMH7_9STRA2.580e-1339.05Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S4NFG8_9STRA1.020e-1030.91Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2KE92_9STRA5.810e-933.63Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_108contigContig_108:106575..107516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133702|gw1.108.15.1
DescriptionCOPI associated protein
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2C5ZJ@1|root,2SE8F@2759|Eukaryota
Evalue2.3e-18
Seed ortholog2880.D8LMH6
Hectar predicted targeting categorysignal peptide
TranscriptId134024
TrackFilteredModels1
ProteinId133702
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133702gene_15550Tribonema minus UTEX_B_3156 geneContig_108 106575..107516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133702Trimin1|133702|gw1.108.15.1Tribonema minus UTEX_B_3156 polypeptideContig_108 106575..107516 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15550_2exon_15550_2Tribonema minus UTEX_B_3156 exonContig_108 106575..106807 -
exon_15550_1exon_15550_1Tribonema minus UTEX_B_3156 exonContig_108 107405..107516 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15550CDS_15550Tribonema minus UTEX_B_3156 CDSContig_108 107405..107516 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15550 ID=mRNA_15550|Name=jgi.p|Trimin1|133702|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=345bp|location=Sequence derived from alignment at Contig_108:106575..107516- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGATTGTGGCGGTTGGCGTCATCATCGCCCTCATACTGGTGCTTGCACT
TTCCAACAACCTGAGCCATGTGGAGTTTGCGGTGCGCGTGTATGCCATCG
TCTTCTGCATAGGCATCATACTGGCCGAACTGGAGTGGCCCTCTATCATG
AAGAACGCGGTACTGCTGAGGTGGTGGCCGGTGAGGGGCCTCCTGTACAC
GTTTGTGGGTCTGCTGACGCTGGAGATCTCAGACTTCAATGACAACCCCG
TGGCCGAGGCATTCCACTACATCTTCGGCTGGATACTGGTCGGCGTGGGC
GTGCTGTACTTCTTCATGGGCCTCGCGCGCCTGCACAAGGTACGC
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protein sequence of jgi.p|Trimin1|133702

>Trimin1|133702|gw1.108.15.1 ID=Trimin1|133702|gw1.108.15.1|Name=jgi.p|Trimin1|133702|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=115bp
VIVAVGVIIALILVLALSNNLSHVEFAVRVYAIVFCIGIILAELEWPSIM
KNAVLLRWWPVRGLLYTFVGLLTLEISDFNDNPVAEAFHYIFGWILVGVG
VLYFFMGLARLHKVR
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mRNA from alignment at Contig_108:106575..107516-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15550 ID=mRNA_15550|Name=jgi.p|Trimin1|133702|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=942bp|location=Sequence derived from alignment at Contig_108:106575..107516- (Tribonema minus UTEX_B_3156 )
GTGATTGTGGCGGTTGGCGTCATCATCGCCCTCATACTGGTGCTTGCACT TTCCAACAACCTGAGCCATGTGGAGTTTGCGGTGCGCGTGTATGCCATCG TCTTCTGCATAGGTGAGCGGCATGCCACTGCCAGCGCGGTCGTGACGTTG CTCATGAAAACATGATGTGGTGTTGAAGTACTATTGTGGACACCAACAGT GTGCTGGCTTCCATTCGCTTCTGCGTAGGCGTGCGATATTGTGGCAGGGC TCACAATGTTCAAGTTCCAGTGGTGTATCACCCTTCAAAGTATCAATGCG TTCATGCAGTAGATAGGGCTCAAATTGTTCAGCCACCCTTGAATGTTTGC GCTCAGCACTGTTGTAGATCTTCCTCCCGTGTCTATGCCATTGTGTTGAT AGGAGTCAACGAGATCTCGATGCGCGCTGCACAGTGCCTGTTCCGTAGCC ACCACAGCCTCATTACACAAGAGCGATGTCGCCTTTCGTTCTCCTTGCAG TTACTTGCGGCCCTGGACTGCACCACTTGGAGATCGGAGTAGCCTATTCA GACGTTGAACGCACCAGGAGCAGCCAACATGCTCTGCGTGACGCTTTGTT CAACTCCCATGCGCAGCCATGCGCAGGGCACATTTGCAGCGGCCTCGTCT TCAATTTCAGGGCAAGTTGCTAAATGAATGTCATGCCGTTACTGTTACTG CTGGTGCAGGCATCATACTGGCCGAACTGGAGTGGCCCTCTATCATGAAG AACGCGGTACTGCTGAGGTGGTGGCCGGTGAGGGGCCTCCTGTACACGTT TGTGGGTCTGCTGACGCTGGAGATCTCAGACTTCAATGACAACCCCGTGG CCGAGGCATTCCACTACATCTTCGGCTGGATACTGGTCGGCGTGGGCGTG CTGTACTTCTTCATGGGCCTCGCGCGCCTGCACAAGGTACGC
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Coding sequence (CDS) from alignment at Contig_108:106575..107516-

>mRNA_15550 ID=mRNA_15550|Name=jgi.p|Trimin1|133702|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=345bp|location=Sequence derived from alignment at Contig_108:106575..107516- (Tribonema minus UTEX_B_3156 )
GTGATTGTGGCGGTTGGCGTCATCATCGCCCTCATACTGGTGCTTGCACT
TTCCAACAACCTGAGCCATGTGGAGTTTGCGGTGCGCGTGTATGCCATCG
TCTTCTGCATAGGCATCATACTGGCCGAACTGGAGTGGCCCTCTATCATG
AAGAACGCGGTACTGCTGAGGTGGTGGCCGGTGAGGGGCCTCCTGTACAC
GTTTGTGGGTCTGCTGACGCTGGAGATCTCAGACTTCAATGACAACCCCG
TGGCCGAGGCATTCCACTACATCTTCGGCTGGATACTGGTCGGCGTGGGC
GTGCTGTACTTCTTCATGGGCCTCGCGCGCCTGCACAAGGTACGC
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