mRNA_15550 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|133702 vs. uniprot
Match: A0A836CNQ0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNQ0_9STRA) HSP 1 Score: 224 bits (571), Expect = 3.490e-74 Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 Query: 1 VIVAVGVIIALILVLALSNNLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTLEISDFNDNPVAEAFHYIFGWILVGVGVLYFFMGLARLHKVR 345 VIVAVGVIIALILVLALSNNLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTLEISDFNDNPVAEAFHYIFGWILVGVGVLYFFMGLARLHKVR Sbjct: 1 VIVAVGVIIALILVLALSNNLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTLEISDFNDNPVAEAFHYIFGWILVGVGVLYFFMGLARLHKVR 115
BLAST of jgi.p|Trimin1|133702 vs. uniprot
Match: D8LMH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMH6_ECTSI) HSP 1 Score: 82.8 bits (203), Expect = 1.410e-17 Identity = 49/117 (41.88%), Postives = 71/117 (60.68%), Query Frame = 1 Query: 1 VIVAVGVIIALILVLALSNNLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTLEISDFNDNPVAEAFHYI--FGWILVGVGVLYFFMGLARLHKVR 345 VI A+GV +A +VL +LS AVR Y I+FC+ II+AELEW + ++ +L W RG++Y+FVG+L LE D + YI WI+VG+G LYF +GL + ++R Sbjct: 27 VIAALGVGVAQGMVLGYHKDLSPESVAVRCYNILFCMLIIMAELEWTTTVREMFVLHSWIPRGVVYSFVGVLVLEEEDEKGLDLGGFGLYITIIAWIMVGIGALYFLLGLCCVKRIR 143
BLAST of jgi.p|Trimin1|133702 vs. uniprot
Match: A0A6H5JBP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBP3_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 1.570e-17 Identity = 50/117 (42.74%), Postives = 72/117 (61.54%), Query Frame = 1 Query: 1 VIVAVGVIIALILVLALSNNLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTLEISDFNDNPVAEAFHYI--FGWILVGVGVLYFFMGLARLHKVR 345 VI A+GV +A +VLA +LS AVR Y I+FC+ II+AELEW + ++ +L W RG++Y+FVG+L LE D + YI WI+VG+G LYF +GL + ++R Sbjct: 82 VIAALGVGVAQGMVLAYHKDLSPESVAVRCYNILFCMLIIMAELEWTTTVREMFVLHSWIPRGVVYSFVGVLVLEEEDEKGLDLGGFGLYITIVAWIMVGIGALYFLLGLCCVKRIR 198
BLAST of jgi.p|Trimin1|133702 vs. uniprot
Match: A0A7S1FP16_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FP16_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 3.060e-16 Identity = 41/109 (37.61%), Postives = 64/109 (58.72%), Query Frame = 1 Query: 58 NLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTLEISDFNDNPVAEAFHY-------------IFGWILVGVGVLYFFMGLARLHKVR 345 N +E A++ Y +VFC+ I+LAELEWP +K + +L++WP RG+LY+F+G+L +E S +AE + + +LV G LYF MGL ++K+R Sbjct: 282 NRDLIEVAIQCYLVVFCLTIVLAELEWPGPIKRSNILQFWPFRGILYSFIGVLGMEESIVKPRTLAEGTTWSSSPVFIAHMALKVSAMVLVVTGCLYFIMGLLCINKIR 390
BLAST of jgi.p|Trimin1|133702 vs. uniprot
Match: A0A4D9D1W9_9STRA (Cryptochrome DASH n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1W9_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 1.250e-14 Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = 1 Query: 55 NNLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTL--EISDFNDNPVAEAFHYIFGWILVGVGVLYFFMGLARLHKVR 345 + LS + A+RVY IVF IG++ EL W +++ LL+ W RG +YTFVGLL++ E+ + AF Y G L+G+GVLYF MG+ L VR Sbjct: 606 HGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQEVEHEARINIVNAFIYCAGLGLIGLGVLYFVMGVFCLKGVR 704
BLAST of jgi.p|Trimin1|133702 vs. uniprot
Match: W7TYB2_9STRA (Golgi apparatus membrane protein TVP15 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYB2_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 2.150e-14 Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 1 Query: 55 NNLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTL--EISDFNDNPVAEAFHYIFGWILVGVGVLYFFMGLARLHKVR 345 + LS + A+RVY IVF IG++ EL W +++ LL+ W RG +YTFVGLL++ E+ + F Y G L+G+GVLYF MG+ L VR Sbjct: 138 HGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQEVEHEARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVR 236
BLAST of jgi.p|Trimin1|133702 vs. uniprot
Match: A0A7R9WMH7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WMH7_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 2.580e-13 Identity = 41/105 (39.05%), Postives = 60/105 (57.14%), Query Frame = 1 Query: 55 NNLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTLEISDFNDN---------PVAEAFHYIFGWILVGVGVLYFFMGLARLHKV 342 LS V++ +RVY I C I++ ELEW S+++ + LLR W RGL+Y FVG+L +E + + + VA F + I+VGVG LYF MG+ + V Sbjct: 87 KTLSLVDYVLRVYIIALCAMIVMNELEWTSVIRESRLLRNWLTRGLIYAFVGVLGIEQYEASPSGRHDDSAHFDVAMNFIRVVSNIMVGVGGLYFVMGICCMQLV 191
BLAST of jgi.p|Trimin1|133702 vs. uniprot
Match: A0A7S4NFG8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NFG8_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 1.020e-10 Identity = 34/110 (30.91%), Postives = 59/110 (53.64%), Query Frame = 1 Query: 58 NLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTLE--------------ISDFNDNPVAEAFHYIFGWILVGVGVLYFFMGLARLHKVR 345 + ++ +RVY I+F + +LAE+E P I+K+ L+ W +RGL+Y+F+GL+ E + + + F + W +VGVG+LY MG+ L K++ Sbjct: 94 KIGILQCCLRVYMILFTLVFVLAEVEMPFIVKHVASLQNWVLRGLMYSFIGLIGAEEARSVVVYKAVKGKLKTGMNTKMVSLFIEVASWAMVGVGLLYLLMGILCLKKIK 203
BLAST of jgi.p|Trimin1|133702 vs. uniprot
Match: A0A7S2KE92_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KE92_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 5.810e-9 Identity = 38/113 (33.63%), Postives = 62/113 (54.87%), Query Frame = 1 Query: 52 SNNLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYTFVGLLTLEIS-----DFN---DNPV-------AEAFHYIFGWILVGVGVLYFFMGLARLHKVR 345 + V+ A+RVY +FC+G+I+AELE ++ LL W VRG++Y+F+G++ +E S D N D+ V A F + + + +GVLYF MG + ++R Sbjct: 160 EGEIGPVQMALRVYMTLFCVGVIVAELEC-LLINRMPLLHSWLVRGIVYSFLGIVGMEESVAVKFDLNNDDDSSVPTTREGHASLFIKLSSYAMTALGVLYFLMGCLCMRRLR 271 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133702 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15550 ID=mRNA_15550|Name=jgi.p|Trimin1|133702|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=345bp|location=Sequence derived from alignment at Contig_108:106575..107516- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGATTGTGGCGGTTGGCGTCATCATCGCCCTCATACTGGTGCTTGCACTback to top protein sequence of jgi.p|Trimin1|133702 >Trimin1|133702|gw1.108.15.1 ID=Trimin1|133702|gw1.108.15.1|Name=jgi.p|Trimin1|133702|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=115bp VIVAVGVIIALILVLALSNNLSHVEFAVRVYAIVFCIGIILAELEWPSIMback to top mRNA from alignment at Contig_108:106575..107516- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15550 ID=mRNA_15550|Name=jgi.p|Trimin1|133702|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=942bp|location=Sequence derived from alignment at Contig_108:106575..107516- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_108:106575..107516- >mRNA_15550 ID=mRNA_15550|Name=jgi.p|Trimin1|133702|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=345bp|location=Sequence derived from alignment at Contig_108:106575..107516- (Tribonema minus UTEX_B_3156 )back to top |