mRNA_15540 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|352225 vs. uniprot
Match: A0A835ZEY4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEY4_9STRA) HSP 1 Score: 726 bits (1874), Expect = 8.940e-265 Identity = 357/357 (100.00%), Postives = 357/357 (100.00%), Query Frame = 1
Query: 1 MIHIIGFVQRKAAPATRSLPAAAVMMQQRCFQPRARLVAYGLDYGKSDVQPAIPPPAVETVKGESPPAEARRDKWAHALAAPEKGCLLLARDGMFGESQKYFKNAVILVIEHGATGSVGLILNQPTVRSMGEVTGGDSGLAHLPGLERNRLYFGGDVGKRRDDGLDVVNFMHGRDDCEGIEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQYTDESQPAALWTEVLARMGGKYKTLAENGRLGARHNAVGVWGWLSVLCALLRWGPGQLARKVKLGAWSAAACDMGTVLNQYTDESQPAALWTEVLARMGGKYKALAEMWGGHR 1071
MIHIIGFVQRKAAPATRSLPAAAVMMQQRCFQPRARLVAYGLDYGKSDVQPAIPPPAVETVKGESPPAEARRDKWAHALAAPEKGCLLLARDGMFGESQKYFKNAVILVIEHGATGSVGLILNQPTVRSMGEVTGGDSGLAHLPGLERNRLYFGGDVGKRRDDGLDVVNFMHGRDDCEGIEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQYTDESQPAALWTEVLARMGGKYKTLAENGRLGARHNAVGVWGWLSVLCALLRWGPGQLARKVKLGAWSAAACDMGTVLNQYTDESQPAALWTEVLARMGGKYKALAEMWGGHR
Sbjct: 1 MIHIIGFVQRKAAPATRSLPAAAVMMQQRCFQPRARLVAYGLDYGKSDVQPAIPPPAVETVKGESPPAEARRDKWAHALAAPEKGCLLLARDGMFGESQKYFKNAVILVIEHGATGSVGLILNQPTVRSMGEVTGGDSGLAHLPGLERNRLYFGGDVGKRRDDGLDVVNFMHGRDDCEGIEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQYTDESQPAALWTEVLARMGGKYKTLAENGRLGARHNAVGVWGWLSVLCALLRWGPGQLARKVKLGAWSAAACDMGTVLNQYTDESQPAALWTEVLARMGGKYKALAEMWGGHR 357
BLAST of jgi.p|Trimin1|352225 vs. uniprot
Match: A0A836CDX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDX0_9STRA) HSP 1 Score: 376 bits (965), Expect = 8.590e-129 Identity = 192/216 (88.89%), Postives = 192/216 (88.89%), Query Frame = 1
Query: 424 HLPGLERNRLYFGGDVGKRRDDGLDVVNFMHGRDDCEGIEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQYTDESQPAALWTEVLARMGGKYKTLAENGRLGARHNAVGVWGWLSVLCALLRWGPGQLARKVKLGAWSAAACDMGTVLNQYTDESQPAALWTEVLARMGGKYKALAEMWGGHR 1071
HL GLERNRLYFGGDVGKRRDDGLDVVNFMHGRDDCEGIEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQYTDESQPAALWTEVLARMGGKYKTLAEN LCA GP QLARKVKLGAWSAAACDMGTVLNQYTDESQPAALWTEVLARMGGKYKALAEMWGGHR
Sbjct: 7 HL-GLERNRLYFGGDVGKRRDDGLDVVNFMHGRDDCEGIEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQYTDESQPAALWTEVLARMGGKYKTLAENS-----------------LCASAV-GPRQLARKVKLGAWSAAACDMGTVLNQYTDESQPAALWTEVLARMGGKYKALAEMWGGHR 203
BLAST of jgi.p|Trimin1|352225 vs. uniprot
Match: A0A836CG07_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG07_9STRA) HSP 1 Score: 344 bits (882), Expect = 2.950e-116 Identity = 172/198 (86.87%), Postives = 176/198 (88.89%), Query Frame = 1
Query: 502 VNFMHGRDDCEGIEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQYTDESQPAALWTEVLARMGGKYKTLAENGRLGARHNAVGVW--------GWLSVLCALLRWGPGQLARKVKLGAWSAAACDMGTVLNQYTDESQPAALWTEVLARMGGKYKALAEMWGGHR 1071
VNFMHGRDDCEGIEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQYTDESQPAALWTEVLARMGGKYKTLAE + G + + + LCALLRWGPGQLARKVKLGAWSAAACDMGTVLNQYTDESQPAALWTEVLARMGGKYKALAEMWGGHR
Sbjct: 3 VNFMHGRDDCEGIEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQYTDESQPAALWTEVLARMGGKYKTLAE--KWGGADDLDSSYFNSYLNGNSGVPFLCALLRWGPGQLARKVKLGAWSAAACDMGTVLNQYTDESQPAALWTEVLARMGGKYKALAEMWGGHR 198
BLAST of jgi.p|Trimin1|352225 vs. uniprot
Match: A0A835YX41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX41_9STRA) HSP 1 Score: 253 bits (645), Expect = 8.480e-80 Identity = 124/197 (62.94%), Postives = 144/197 (73.10%), Query Frame = 1
Query: 220 KWAHALAAPEKGCLLLARDGMFGESQKYFKNAVILVIEHGATGSVGLILNQPTVRSMGEVTGGDSGLAHLPGLERNRLYFGGDVGKRRDDGLDVVNFMHGRDDCEGIEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQYTDESQPAALWTEVLARMGGKYKTLA 810
+WAHALAAPEKGCLL+A +GMF Q YF+ AV+L+IEHGA G+ GLILNQPT +M EVT G A + G E N LYFGGDV DG D VN MHGR+D EG E++KGVKLGGL +ALA VA+G A P EFKFF R+CGW PGQL EVK G WY AACDV T+LD Y + QP LW++VL RMGGKY +A
Sbjct: 36 RWAHALAAPEKGCLLIANEGMFDVGQIYFRRAVVLIIEHGARGTAGLILNQPTTSTMVEVTEGQD--AQIAGFEDNTLYFGGDVVSGTGDGTDAVNLMHGREDVEGTEILKGVKLGGLEEALARVAEGTAQPQEFKFFCRYCGWAPGQLQEEVKAGIWYLAACDVPTILDNYI-QGQPDGLWSDVLRRMGGKYADVA 229
BLAST of jgi.p|Trimin1|352225 vs. uniprot
Match: A0A6H5JA69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA69_9PHAE) HSP 1 Score: 233 bits (594), Expect = 2.060e-70 Identity = 129/241 (53.53%), Postives = 159/241 (65.98%), Query Frame = 1
Query: 67 AVMMQQRCFQPRARLVAYGLD-YGKSDVQPAIPPPAVETVKGESPPAEARRDKWAHALAAPEKGCLLLARDGMFGESQKYFKNAVILVIEHGATGSVGLILNQPTVRSMGEVTGGDSGLAHLPGLERNRLYFGGDVGKRRDDGLDVVNFMHGRDDCEGIEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQYTDESQPAALWTEVLARM 786
A M+ R F RARL++ GLD +G Q + AV T G A A R WAH L PE GCL++A+ GMF Q+YF AV LVI+HG G+V LILN+PT +MG+V GD L +PG+E N LY GGDV RDDGLDVVN MHGR+D G+EV+KG++LGGL +ALALVAQG+A P EFKFF R+ GWGPGQL EV GAW AACD+ +VL+ QP W E++ R+
Sbjct: 113 AESMELRDF--RARLMSKGLDGWGGGGEQARV---AVVTAAGGG--ARALRGGWAHPLVRPELGCLVIAKQGMFVTQQQYFYKAVALVIQHGDDGTVALILNRPTTFTMGDVCKGD--LQSVPGMEDNVLYMGGDVTGARDDGLDVVNLMHGREDVPGMEVVKGLRLGGLKEALALVAQGRAQPEEFKFFSRYSGWGPGQLEAEVLAGAWELAACDLESVLESQNHPDQPGHFWGEIMGRL 344
BLAST of jgi.p|Trimin1|352225 vs. uniprot
Match: A0A1Y5IDK1_OSTTA (Uncharacterized protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IDK1_OSTTA) HSP 1 Score: 170 bits (431), Expect = 1.170e-46 Identity = 109/240 (45.42%), Postives = 140/240 (58.33%), Query Frame = 1
Query: 100 RARLVAYGLDYGKSDVQPAIPPPAVETVKGESPPAEARRDKWAHALAAPEKGCLLLARDGMFGESQKYFKNAVILVIEHGATGSVGLILNQPTVRSMGEVTGGDSGLAHLPGLERNRLYFGGDVGKRRDDGLDVVNFMHGRDDCEG-IEVIKGVKLGGLPDALALVAQ--GKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQYTDESQPAALWTEVLARMGGKYKTLA 810
RARL+A + + AI ++ ++ ++P A+ WAH +AAPEKGCLL+A D F SQ+YF AVILV+EH GS+G+ILN+PT +MG V+G SG P E N LYFGGDVG DG V+F+HGR+D +G +EV+ GV LGG A LV Q P EFKFF R+CGW PGQL E + G WY A L Q +P LW E+L GG+ +A
Sbjct: 73 RARLLAREREATPEERASAISEENMKVLEAQNPRL-AQAKPWAHVIAAPEKGCLLVAADQEFRMSQQYFHQAVILVLEHHENGSMGIILNRPTQYNMGYVSGEPSG----PFAE-NALYFGGDVG----DG--TVSFLHGREDVKGSVEVLPGVYLGGYESACELVQQDGSTCHPDEFKFFARYCGWAPGQLESECERGVWYPIAAAKELSLKQVIQLPKP--LWREILELCGGELADIA 298
BLAST of jgi.p|Trimin1|352225 vs. uniprot
Match: A0A7S0PMA6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0PMA6_9CHLO) HSP 1 Score: 163 bits (413), Expect = 4.890e-44 Identity = 92/184 (50.00%), Postives = 114/184 (61.96%), Query Frame = 1
Query: 223 WAHALAAPEKGCLLLARDGMFGESQKYFKNAVILVIEHGATGSVGLILNQPTVRSMGEVTGGDSGLAHLPGLERNRLYFGGDVGKRRDDGLDVVNFMHGRDDCEG-IEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQYTDESQPAALWTE 771
WAH +AAPEKGCLL+A D F SQ+YF AVILV+EH GS+G+ILN+PT MG V+G G+ +N LYFGGDVG DG V+F+HGR+D +G +EV+ G+ LGG A ALV + A P EFKFF R+CGW PGQL E + G W+ A L Q +P LW E
Sbjct: 147 WAHVIAAPEKGCLLVAADHEFRMSQQYFHQAVILVLEHHENGSMGVILNRPTQYDMGYVSGDVDGV-----FAKNALYFGGDVG----DG--TVSFLHGREDVKGSVEVLPGMYLGGYDSACALVEEQGAKPDEFKFFARYCGWAPGQLESECERGVWFPVAGAKELALKQVIQLPKP--LWRE 317
BLAST of jgi.p|Trimin1|352225 vs. uniprot
Match: K8EAP8_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EAP8_9CHLO) HSP 1 Score: 157 bits (398), Expect = 2.030e-41 Identity = 91/200 (45.50%), Postives = 113/200 (56.50%), Query Frame = 1
Query: 199 PAEARRDKWAHALAAPEKGCLLLARDGMFGESQKYFKNAVILVIEHGATGSVGLILNQPTVRSMGEVTGGDSGLAHLPGLERNRLYFGGDVGKRRDDGLDVVNFMHGRDD-CEGIEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQYTDESQPAALWTEVLARMGGK 795
P A+ WAH +A PEKG L++A F SQ+YF VIL++EH GS+G+ILN+PT+ M +V ++G N LYFGGDVG DG V+F+HG D + EV GV +GG DA LV +GK DP EFKFF R+CGW PGQL E G WY AC L + P LW EVL GG+
Sbjct: 156 PGLAKDKAWAHVIAKPEKGSLIVAATDDFVTSQQYFNQCVILLLEHSKDGSMGVILNRPTMYKMADVVNDENGP-----FSENALYFGGDVG----DG--TVSFLHGSPDVADAEEVSPGVFIGGFNDAGRLVKEGKKDPREFKFFARYCGWAPGQLEDECARGVWYPVACSRQIALKPVI--ALPKPLWREVLELCGGE 342
BLAST of jgi.p|Trimin1|352225 vs. uniprot
Match: A0A7S0S201_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S201_9CHLO) HSP 1 Score: 150 bits (378), Expect = 1.040e-38 Identity = 93/203 (45.81%), Postives = 120/203 (59.11%), Query Frame = 1
Query: 223 WAHALAAPEKGCLLLARDGMFGESQKYFKNAVILVIEH-GATGSVGLILNQPTVRSMGEVTGGDSGLAH-LPGLERNRLYFGGDVGKRRDDGLDVVNFMHGRDDCE-GIEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQYTDESQPAALWTEVLARMGGKYKTLAENGR 822
WAH++ PEKG LLLA MF SQ+YF AVIL+++H + GS G+ILN+P++ ++G++ L H LP L+ GGDVG G DV +H R D EV+KGV LGG+ A LVA GKADP EFK++V++ GWGPGQL E K G W+ AA +L + S W EVL MGG Y L+ N R
Sbjct: 127 WAHSIPKPEKGSLLLAHPMMFTNSQEYFFQAVILLLDHDNSKGSWGIILNRPSMYTLGKLE-----LTHPLPEFASCPLHVGGDVG-----GGDVA-VLHARTDLPLSKEVVKGVHLGGVDAARELVAAGKADPLEFKWYVKYAGWGPGQLESECKAGVWFTAAASARVILGE-ARASDGCDRWHEVLGLMGGDYAELSMNVR 317
BLAST of jgi.p|Trimin1|352225 vs. uniprot
Match: A0A2J7ZXQ0_9CHLO (Uncharacterized protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZXQ0_9CHLO) HSP 1 Score: 145 bits (366), Expect = 2.640e-37 Identity = 89/223 (39.91%), Postives = 126/223 (56.50%), Query Frame = 1
Query: 184 KGESPPAEARRDKWAHALAAPEKGCLLLARDGMFGESQKYFKNAVILVIEHGATGSVGLILNQPTVRSMGEVTGGDSGLAHLPGLERN--RLYFGGDVGKRRDDGLDVVNFMHGRDDCEGIE-VIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQYTDESQPAALWTEVLARMGGKYKTLAENGRLGARHNA 843
KG+ + +WAHA++ PEKG +LLA MF +SQ YF AVIL++EHG +GS GLILN+P+ +G+V + P + RLY GGDVG + V MH + EG+E V+KGV LGG+ A V G+A+ +F++F + GW GQLA E K G W+ AA VL + E + A W ++L MGG Y+ L++ + H+A
Sbjct: 86 KGQGQAGPSTSGEWAHAISKPEKGAVLLAHPLMFRQSQPYFHRAVILLLEHGDSGSYGLILNRPSKLRIGDVP------LNRPQTQFADCRLYVGGDVGSGQ------VQVMHPHGELEGVEEVMKGVYLGGMDSARDAVEAGRAEAKDFRWFSAYAGWAAGQLAAECKRGVWFTAAASPKVVLQEVALE-EGADYWHKLLELMGGDYQGLSQAVKKHDSHDA 295 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352225 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15540 ID=mRNA_15540|Name=jgi.p|Trimin1|352225|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1074bp|location=Sequence derived from alignment at Contig_112:496818..508787+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGATCCACATCATCGGCTTCGTGCAGCGGAAAGCGGCGCCGGCGACTCGback to top protein sequence of jgi.p|Trimin1|352225 >Trimin1|352225|estExt_Genemark1.C_Ctg_1120052 ID=Trimin1|352225|estExt_Genemark1.C_Ctg_1120052|Name=jgi.p|Trimin1|352225|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=358bp MIHIIGFVQRKAAPATRSLPAAAVMMQQRCFQPRARLVAYGLDYGKSDVQback to top mRNA from alignment at Contig_112:496818..508787+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15540 ID=mRNA_15540|Name=jgi.p|Trimin1|352225|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=11970bp|location=Sequence derived from alignment at Contig_112:496818..508787+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_112:496818..508787+ >mRNA_15540 ID=mRNA_15540|Name=jgi.p|Trimin1|352225|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1074bp|location=Sequence derived from alignment at Contig_112:496818..508787+ (Tribonema minus UTEX_B_3156 )back to top |