mRNA_15537 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174283
Unique NamemRNA_15537
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|174283 vs. uniprot
Match: A0A835ZEQ8_9STRA (NLI interacting factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEQ8_9STRA)

HSP 1 Score: 195 bits (496), Expect = 1.870e-63
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:    1 MQVIVFTASLPQYANPLLDLLDPKGHITGRLFRHHCTFQEGYFIKDLTRLRNNQNLMNTIIVDNSPIAYKFQPENAIDCTTWLGVRPSQHLL 276
            MQVIVFTASLPQYANPLLDLLDPKGHITGRLFRHHCTFQEGYFIKDLTRLRNNQNLMNTIIVDNSPIAYKFQPENAIDCTTWLGVRPSQHLL
Sbjct:    1 MQVIVFTASLPQYANPLLDLLDPKGHITGRLFRHHCTFQEGYFIKDLTRLRNNQNLMNTIIVDNSPIAYKFQPENAIDCTTWLGVRPSQHLL 92
[Close]
BLAST of jgi.p|Trimin1|174283 vs. uniprot
Match: A0A836CEE7_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEE7_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.480e-41
Identity = 67/82 (81.71%), Postives = 77/82 (93.90%), Query Frame = 1 
Query:    4 QVIVFTASLPQYANPLLDLLDPKGHITGRLFRHHCTFQEGYFIKDLTRLRNNQNLMNTIIVDNSPIAYKFQPENAIDCTTWL 249
            +VI+FTASLPQYANPLLD+LDPKG+ITGRLFR HCTF EGYF+KDLT LRNN+NL +TIIVDNSP+AY FQP+NAIDCT+WL
Sbjct:  356 EVIIFTASLPQYANPLLDMLDPKGYITGRLFREHCTFHEGYFVKDLTLLRNNKNLSDTIIVDNSPMAYMFQPDNAIDCTSWL 437
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BLAST of jgi.p|Trimin1|174283 vs. uniprot
Match: A0A6H5JYB3_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB3_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.910e-37
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 1 
Query:    4 QVIVFTASLPQYANPLLDLLDPKGHITGRLFRHHCTFQEGYFIKDLTRLRNNQNLMNTIIVDNSPIAYKFQPENAIDC 237
            +VI+FTASLPQYANPLLD+LDPKG IT RLFR HCTF EGYF+KDLT LR+ Q+L +TIIVDNSP+AY FQPENAIDC
Sbjct:   32 EVIIFTASLPQYANPLLDMLDPKGTITSRLFREHCTFHEGYFVKDLTLLRH-QSLESTIIVDNSPMAYMFQPENAIDC 108
[Close]
BLAST of jgi.p|Trimin1|174283 vs. uniprot
Match: D7FHQ5_ECTSI (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHQ5_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 3.460e-36
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:    4 QVIVFTASLPQYANPLLDLLDPKGHITGRLFRHHCTFQEGYFIKDLTRLRNNQNLMNTIIVDNSPIAYKFQPENAIDCTTWLGVRPSQHL 273
            +VI+FTASLPQYANPLLD+LDPKG IT RLFR HCTF EGYF+KDLT LR+ Q+L +TIIVDNSP+AY FQPENAIDC +W+  R    L
Sbjct:  359 EVIIFTASLPQYANPLLDVLDPKGTITSRLFREHCTFHEGYFVKDLTLLRH-QSLESTIIVDNSPMAYMFQPENAIDCISWIDDREDTEL 447
[Close]
BLAST of jgi.p|Trimin1|174283 vs. uniprot
Match: A0A835YRL6_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRL6_9STRA)

HSP 1 Score: 128 bits (322), Expect = 5.140e-33
Identity = 65/107 (60.75%), Postives = 73/107 (68.22%), Query Frame = 1 
Query:    4 QVIVFTASLPQYANPLLDLLDPKGHITGRLFRHHCTFQEGYFIKD----------------------LTRLRNNQNLMNTIIVDNSPIAYKFQPENAIDCTTWLGVR 258
            +VI+FTASLPQYANPLLD LDPKG IT RLFR HCTF EGYF+                        LT LRNN NL +TIIVDNSP+AY FQP+NAIDCT+WL +R
Sbjct:  345 EVIIFTASLPQYANPLLDRLDPKGLITARLFREHCTFHEGYFVXXXXXXXXXXXXXXXXXXXXXXXXLTLLRNNTNLSDTIIVDNSPMAYMFQPDNAIDCTSWLELR 451
[Close]
BLAST of jgi.p|Trimin1|174283 vs. uniprot
Match: A0A836C8A4_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8A4_9STRA)

HSP 1 Score: 113 bits (282), Expect = 6.590e-30
Identity = 54/87 (62.07%), Postives = 67/87 (77.01%), Query Frame = 1 
Query:    4 QVIVFTASLPQYANPLLDLLDPKGHITGRLFRHHCT----FQEGYFIKDLTRLRNNQNLMNTIIVDNSPIAYKFQPENAIDCTTWLG 252
            +VIVFTASLP+YANPLLDLLDPKG+ITGRLFR HCT    F   +++K+LT LR++ +L N IIV+N+  AY  QP N  +CTTW G
Sbjct:   54 EVIVFTASLPEYANPLLDLLDPKGYITGRLFREHCTRVGGFSGDFYLKNLTLLRDDMDLSNIIIVENNRDAYMLQPTNGNECTTWRG 140
[Close]
BLAST of jgi.p|Trimin1|174283 vs. uniprot
Match: A0A507FIH8_9FUNG (FCP1 homology domain-containing protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FIH8_9FUNG)

HSP 1 Score: 100 bits (248), Expect = 6.970e-23
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:    4 QVIVFTASLPQYANPLLDLLDPKGHITGRLFRHHCTFQEGYFIKDLTRLRNNQNLMNTIIVDNSPIAYKFQPENAIDCTTWLGVRPSQHLL 276
            +V+VFTASL  YANP+LD+LD K  I  RLFR HCT+ +G ++KDL+ L   + + +TII+DNSP AY FQP NAI CT+W      + LL
Sbjct:  299 EVMVFTASLSNYANPVLDMLDTKRVIQHRLFREHCTYYQGNYVKDLSLL--GRPMDSTIIIDNSPAAYLFQPSNAIPCTSWFDDPNDEELL 387
[Close]
BLAST of jgi.p|Trimin1|174283 vs. uniprot
Match: B6AJU4_CRYMR (NLI interacting factor-like phosphatase family protein n=1 Tax=Cryptosporidium muris (strain RN66) TaxID=441375 RepID=B6AJU4_CRYMR)

HSP 1 Score: 99.8 bits (247), Expect = 1.730e-22
Identity = 48/83 (57.83%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:    4 QVIVFTASLPQYANPLLDLLDPKGHITGRLFRHHCTFQEGYFIKDLTRLRNNQNLMNTIIVDNSPIAYKFQPENAIDCTTWLG 252
            +V++FTASL +YANPLLD LDP+G    RLFR +CT +   FIKDL++L   +NL + II+DNSPI+Y FQPENAI  T+W  
Sbjct:  399 EVVIFTASLSKYANPLLDKLDPRGLCPYRLFRENCTVEGNSFIKDLSKL--GRNLEDVIIIDNSPISYLFQPENAIPITSWFN 479
[Close]
BLAST of jgi.p|Trimin1|174283 vs. uniprot
Match: D2VJS3_NAEGR (NLI interacting factor domain-containing protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VJS3_NAEGR)

HSP 1 Score: 98.6 bits (244), Expect = 4.170e-22
Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:    4 QVIVFTASLPQYANPLLDLLDPKGHITGRLFRHHCTFQEGYFIKDLTRLRNNQNLMNTIIVDNSPIAYKFQPENAIDCTTW 246
            ++I+FTASL  YANPLLD+LD  G I GRLFR HCT     +IKDL+RL   ++L  TIIVDNSP  Y  QP+NA+ CTTW
Sbjct:  365 EIIIFTASLSLYANPLLDILDKHGVIEGRLFREHCTKVGDTYIKDLSRL--GRDLDQTIIVDNSPSCYAMQPQNALACTTW 443
[Close]
BLAST of jgi.p|Trimin1|174283 vs. uniprot
Match: A0A1J4MSR5_9CRYT (NLI interacting factor-like phosphatase family protein n=1 Tax=Cryptosporidium andersoni TaxID=117008 RepID=A0A1J4MSR5_9CRYT)

HSP 1 Score: 98.6 bits (244), Expect = 4.590e-22
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    4 QVIVFTASLPQYANPLLDLLDPKGHITGRLFRHHCTFQEGYFIKDLTRLRNNQNLMNTIIVDNSPIAYKFQPENAIDCTTWLG 252
            +V++FTASL +YANPLLD LDP G    RLFR +CT +   FIKDL++L   +NL + II+DNSPI+Y FQPENAI  T+W  
Sbjct:  408 EVVIFTASLSKYANPLLDKLDPHGLCPYRLFRENCTVEGNSFIKDLSKL--GRNLEDVIIIDNSPISYLFQPENAIPITSWFN 488
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174283 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZEQ8_9STRA1.870e-63100.00NLI interacting factor n=1 Tax=Tribonema minus Tax... [more]
A0A836CEE7_9STRA1.480e-4181.71HAD-like domain-containing protein n=1 Tax=Tribone... [more]
A0A6H5JYB3_9PHAE2.910e-3779.49FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
D7FHQ5_ECTSI3.460e-3672.22FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
A0A835YRL6_9STRA5.140e-3360.75HAD-like domain-containing protein n=1 Tax=Tribone... [more]
A0A836C8A4_9STRA6.590e-3062.07HAD-like domain-containing protein n=1 Tax=Tribone... [more]
A0A507FIH8_9FUNG6.970e-2353.85FCP1 homology domain-containing protein n=1 Tax=Ch... [more]
B6AJU4_CRYMR1.730e-2257.83NLI interacting factor-like phosphatase family pro... [more]
D2VJS3_NAEGR4.170e-2260.49NLI interacting factor domain-containing protein n... [more]
A0A1J4MSR5_9CRYT4.590e-2257.83NLI interacting factor-like phosphatase family pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_112contigContig_112:449921..450785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174283|e_gw1.112.39.1
BRITEko00000,ko01000,ko01009,ko03021
KEGG koko:K15731,ko:K17616
EC3.1.3.16
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008420,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1903506,GO:2000112,GO:2001141
Descriptionphosphoprotein phosphatase activity
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5190@1|root,KOG1605@2759|Eukaryota
Evalue5.66e-37
Seed ortholog2880.D7FHQ5
Hectar predicted targeting categoryother localisation
TranscriptId174605
TrackFilteredModels1
ProteinId174283
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174283gene_15537Tribonema minus UTEX_B_3156 geneContig_112 449921..450785 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15537_1exon_15537_1Tribonema minus UTEX_B_3156 exonContig_112 449921..450055 +
exon_15537_2exon_15537_2Tribonema minus UTEX_B_3156 exonContig_112 450642..450785 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15537CDS_15537Tribonema minus UTEX_B_3156 CDSContig_112 449921..450055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174283Trimin1|174283|e_gw1.112.39.1Tribonema minus UTEX_B_3156 polypeptideContig_112 449921..450785 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15537 ID=mRNA_15537|Name=jgi.p|Trimin1|174283|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=279bp|location=Sequence derived from alignment at Contig_112:449921..450785+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGTGATCGTGTTCACGGCTTCGCTGCCGCAGTATGCCAACCCCCT
GCTGGACCTTCTAGACCCCAAGGGTCACATCACCGGCAGACTGTTCCGCC
ATCACTGCACGTTTCAGGAAGGGTACTTTATCAAGGACCTCACCCGTCTA
CGCAACAACCAGAACCTCATGAACACCATTATCGTGGACAATTCGCCCAT
TGCGTACAAGTTTCAGCCCGAAAACGCCATCGACTGCACCACCTGGCTAG
GGGTACGTCCATCGCAACATTTGCTTTGA
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protein sequence of jgi.p|Trimin1|174283

>Trimin1|174283|e_gw1.112.39.1 ID=Trimin1|174283|e_gw1.112.39.1|Name=jgi.p|Trimin1|174283|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=93bp
MQVIVFTASLPQYANPLLDLLDPKGHITGRLFRHHCTFQEGYFIKDLTRL
RNNQNLMNTIIVDNSPIAYKFQPENAIDCTTWLGVRPSQHLL*
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mRNA from alignment at Contig_112:449921..450785+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15537 ID=mRNA_15537|Name=jgi.p|Trimin1|174283|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=865bp|location=Sequence derived from alignment at Contig_112:449921..450785+ (Tribonema minus UTEX_B_3156 )
ATGCAGGTGATCGTGTTCACGGCTTCGCTGCCGCAGTATGCCAACCCCCT
GCTGGACCTTCTAGACCCCAAGGGTCACATCACCGGCAGACTGTTCCGCC
ATCACTGCACGTTTCAGGAAGGGTACTTTATCAAGGTGCGTGTGTGCTGC
TTTGCTGCTGCACCGGAAGTTGCACTTGAAGTTGCTATGTATCATCAATG
GCTGGTGCACGTGCTGCGTGCTGCCATGTACTGTGCACCCAGGTGTTGTT
GATGCAATGCGTCTTGGTACCTGCACGCCTACACTTGAAGTTGTACTTGA
AGTTGATATGTATAACCAAGGTGGCAGCAGCATATGTAGATAATGGGCAG
TTCAGGCACTGGTGTGTACTGTGGTGGCCTGGGAATAGCAGTGGGCATAC
ATGCCTACGCCACCTGCGTTCATGGTCCATGCTGCAAGCGTGACTCTGCC
ATGTGCTCTGAGTCTGAGTCTTTCATGTGCTGCTCATGCACAGAACAAGT
GGTTGCTGCTGTAGTTGTATACGTAAAGTATCATATCTTGCTAGGTATTA
TCAATGCAGTCGGGTGTACTGCCGCGCTACACTGCAAGTGCACTTCAGGC
AGGTGTGCAGTGGTACAGGTGCTTCCATGTGTGCTTCCTCAGCAGTTGAA
GTACTTCAAGGCTGCACTCACAGAATGTATCTGCCTTTCTGCTGCTGCTG
TCTTTATTGTTGTTATTACAGGACCTCACCCGTCTACGCAACAACCAGAA
CCTCATGAACACCATTATCGTGGACAATTCGCCCATTGCGTACAAGTTTC
AGCCCGAAAACGCCATCGACTGCACCACCTGGCTAGGGGTACGTCCATCG
CAACATTTGCTTTGA
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Coding sequence (CDS) from alignment at Contig_112:449921..450785+

>mRNA_15537 ID=mRNA_15537|Name=jgi.p|Trimin1|174283|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=279bp|location=Sequence derived from alignment at Contig_112:449921..450785+ (Tribonema minus UTEX_B_3156 )
ATGCAGGTGATCGTGTTCACGGCTTCGCTGCCGCAGTATGCCAACCCCCT
GCTGGACCTTCTAGACCCCAAGGGTCACATCACCGGCAGACTGTTCCGCC
ATCACTGCACGTTTCAGGAAGGGTACTTTATCAAGGACCTCACCCGTCTA
CGCAACAACCAGAACCTCATGAACACCATTATCGTGGACAATTCGCCCAT
TGCGTACAAGTTTCAGCCCGAAAACGCCATCGACTGCACCACCTGGCTAG
GGGTACGTCCATCGCAACATTTGCTTTGA
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