mRNA_15534 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|8851
Unique Name	mRNA_15534
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|8851 vs. uniprot
Match: A0A836CM63_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM63_9STRA)

HSP 1 Score: 170 bits (430), Expect = 3.020e-50
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 2

Query:   65 MTGMPMIPIGVMTPGQLAAIKAKKQEEXXRANSPPPAEDTPAPAAPEAEAPAAGSIAIAHANLARPTQGRKRPPAMAKRAFASPVPLPSAAVEA 346
            MTGMPMIPIGVMTPGQLAAIKAKKQEE  RANSPPPAEDTPAPAAPEAEAPAAGSIAIAHANLARPTQGRKRPPAMAKRAFASPVPLPSAAVEA
Sbjct:    1 MTGMPMIPIGVMTPGQLAAIKAKKQEEEQRANSPPPAEDTPAPAAPEAEAPAAGSIAIAHANLARPTQGRKRPPAMAKRAFASPVPLPSAAVEA 94

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|8851 vs. uniprot

BLAST of jgi.p|Trimin1|8851 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CM63_9STRA	3.020e-50	97.87	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_112	contig	Contig_112:366534..370471 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|8851\|CE8850_20
Hectar predicted targeting category	other localisation
TranscriptId	9173
Track	FilteredModels1
ProteinId	8851

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|8851	gene_15534	Tribonema minus UTEX_B_3156	gene	Contig_112 366534..370471 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|8851	Trimin1\|8851\|CE8850_20	Tribonema minus UTEX_B_3156	polypeptide	Contig_112 366598..370345 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_15534_1	exon_15534_1	Tribonema minus UTEX_B_3156	exon	Contig_112 366534..366606 +
exon_15534_2	exon_15534_2	Tribonema minus UTEX_B_3156	exon	Contig_112 367477..367530 +
exon_15534_3	exon_15534_3	Tribonema minus UTEX_B_3156	exon	Contig_112 368704..368924 +
exon_15534_4	exon_15534_4	Tribonema minus UTEX_B_3156	exon	Contig_112 370141..370471 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_15534	UTR5_15534	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_112 366534..366597 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_15534	CDS_15534	Tribonema minus UTEX_B_3156	CDS	Contig_112 366598..366606 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_15534	UTR3_15534	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_112 370346..370471 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_112:366534..370471+
coding sequence from alignment at Contig_112:366534..370471+

spliced messenger RNA

>mRNA_15534 ID=mRNA_15534|Name=jgi.p|Trimin1|8851|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=679bp|location=Sequence derived from alignment at Contig_112:366534..370471+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCGGCGTCATCGGAGGATCTCGACGCGGATGGGGAGAAGGAAAAGAACA
TCAGGAAACTCAAGATGACGGGGATGCCCATGATTCCCATCGGCGTCATG
ACCCCTGGCCAGCTCGCGGCCATCAAAGCCAAGAAGCAGGAAGAGGAGCA
GAGGGCCAACTCCCCCCCTCCCGCAGAGGACACCCCTGCCCCCGCCGCCC
CCGAAGCTGAAGCGCCTGCGGCCGGCAGCATTGCGATTGCGCACGCCAAC
CTTGCGCGCCCAACGCAGGGGCGCAAGCGGCCACCGGCCATGGCCAAGCG
CGCCTTCGCGTCGCCCGTTCCGCTGCCTAGTGCCGCAGTTGAGGCCAGCG
TGCCGGCAGAAGCGACCGCCGCCGCCGACAGCGCCGCCGCGCCCGCCGCC
GACAGCGAGCCGAGCGACGCTACCGCTGCTGCGGCTGCAGCTGCGGCCGT
CATCAATGCAGCGGTGGACGCCGCCACCAACGAAGCCAGCACCAAGGCTG
ACGTGGAGGCTGTTGCAGGCGCTGAGAGTGGCGACGGTGGTGGCGATGCA
TAGCCTTGAGCGCCGAGTCGTGCATGCGTGCGCATCTGCGGCGGCGGCCA
CCTGTTTCGGCCGTGCCACAGTCAGGTGTTGTCGGCGGCGGCAGGCGTTG
GCGGCACGAATGTCGAAGAACGTGTACGT

protein sequence of jgi.p|Trimin1|8851

>Trimin1|8851|CE8850_20 ID=Trimin1|8851|CE8850_20|Name=jgi.p|Trimin1|8851|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=163bp
MTGMPMIPIGVMTPGQLAAIKAKKQEEEQRANSPPPAEDTPAPAAPEAEA
PAAGSIAIAHANLARPTQGRKRPPAMAKRAFASPVPLPSAAVEASVPAEA
TAAADSAAAPAADSEPSDATAAAAAAAAVINAAVDAATNEASTKADVEAV
AGAESGDGGGDA*

mRNA from alignment at Contig_112:366534..370471+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_15534 ID=mRNA_15534|Name=jgi.p|Trimin1|8851|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3938bp|location=Sequence derived from alignment at Contig_112:366534..370471+ (Tribonema minus UTEX_B_3156 )
GTCGGCGTCATCGGAGGATCTCGACGCGGATGGGGAGAAGGAAAAGAACA
TCAGGAAACTCAAGATGACGGGGGTGAGTGAGGGCTTTTGAACTTTAACA
TGAACTTCATATCAGCACACTCAACACGGCCGCAAAGTGTGAAACAGAAA
GTGTGATGGAGGTCGGGTTTGTGCGTTTGCAGTAGTGTGCGTTTGCTGTG
CGGCTCATCACTTGAACTTCGTTCGGGCCAACAACGTGTCCGTGGCCTAA
CCTAGTCTTCTCGCTGGTTTGCAACAAAACGGACGCTGAAGATGGTCACA
GAAGTGGACACAGCACCTTAAAGCGCAAGTGCAACACAGGTCATGCATCT
GCCATGGACTCGCGTTGGGGTTAGGTTGGGTCTAACTGCAGCGCACGTCA
TCACTTTAGCTTTGTGCGGGCAAACAAAACGTCCGGGCTGTGCTGTACCC
TGGTGTATGACGAGCTGCACCGTAATCTGACGATATGTACGGTATGCATC
GAATGTAGGGCATGTTTGCAGTTTTATTGCACTGTAGTCCGATCGTGTAA
GCTGTGCTGCGCGCCGCACCACAGTGTGATGGTGTGTAATTTAGGTGGGG
TATTCACGCATTCGCCATTGACACACACACAGTGCCTGTTTGTCCAAGTT
TAATGTAGCGGCCGTCACCTAACCCTAACCCTAATCATTTCTGACTTCAT
AATATGAAGTTCATAATGTAACATATTATTGTAACACCGGACTCTGAGTC
GACAGCAATGCTTAGAGACGGCACACACCCCTGATCGTCACTGTTTGTTG
CAGGTGCTCAGCATGGCTAGTTGGTGTTGAAGACAAAGTTGAAGTTAAAG
AATCGTTTTTTATACACTACGCTCACTGGACAAATGCACCACACTCACAG
TTAGCAATCACCCGTTGCTCGTCGACGCACGCTCTCTGTGCAGATGCCCA
TGATTCCCATCGGCGTCATGACCCCTGGCCAGCTCGCGGCCATCAAAGTG
AGCATGAATTCATGAATTCATGCAACGTTGAATGAGTTTCATCAACACCG
CTAGCGGAAGCATATAGTCATCACCACCTTTACCATGGTGGTGCCCACCA
CAACTCTCGTGTTGCTCGCACAATAGTGGGATGAGGATCATAATTGCACC
AATTTGCTTCCTCAGCATCAAGTGTAGAACACCGTACGCTTCTGTTCATG
CCGTGACCTGAGTGTCTCTTGTACTTCAAAGTAGATCAAAATTGGTGGTC
AGGCTGACTACTAGTAGCTGATTTGGCACCATCAGCAGAGCTGCAATACT
GCCCCCAGGCAGCATTCAACAACGCCTGTGTACCCAGCAAACCAAGACTT
GCTGTTAGCACACGCCGGGCGTGTCGTTCGTGTTGCATTGCTCAGCACAT
ATCTGAGGCCAAAAGCGGGGATCAAATTACTACTACAGAGAAGACGCCAA
GCCTGCAGTCGAGGCTCAGCCGCCTGCCTCCGATTATCAAGATCCGCTTG
GCGCATTTGCATTAGAAAGTGACGGTGCGACGACACATGTACACTGCCAC
GCCTTGCGGCTGATAAACATGAGACACCAATCACCTGTCGTCAAGCGAGG
CCAAACGGGGGGTCCAAGTTACTGCAGGGGGGACGTTGAGCTGCGGTGGA
GGCTCATCCGCCTCCCTCTGACTACTCACATTCACTTGGCGCATGTGCAT
TACAAAGTGACAGTGCGACGACACATGTTCATTGCCTCATCTCGCGGCTG
AAACAATGTGAAAAACAAATCACCTGTGGTCAATGCGAGGCCGAAAGCGG
GGGCAACTTACTACTGGGGTGGCGCCTGTGGTGGAGGCTCAGCAGCTTGA
AGTTCTCTCCGACTGCATCGAGCACATGCACTGTGTGGGGCACTCGTTTC
AAGCAGCGATAACGCCGCGCCGCATGTGCGTCTTTTCACTTCGCGGCTGA
CACATGAATCATGATGCCAAAATGACAAAAAAAAAGTGATCAGCCTCTGT
ACGCCCCCCTGGTTGCCCCTCAATTGGAAACACTGGCTGGAACATGAGTT
CAGGTCAGCTCAGACCCCTCCCCCCCCCCCCCCACAGGCCACCTTTCGAT
CACAAGCACTGACATTGCCACGCCACATCTCCCCCCCCCCCTTCTCCATC
TCCCATCGCGCCATCCTCAGGCCAAGAAGCAGGAAGAGGAGCAGAGGGCC
AACTCCCCCCCTCCCGCAGAGGACACCCCTGCCCCCGCCGCCCCCGAAGC
TGAAGCGCCTGCGGCCGGCAGCATTGCGATTGCGCACGCCAACCTTGCGC
GCCCAACGCAGGGGCGCAAGCGGCCACCGGCCATGGCCAAGCGCGCCTTC
GCGTCGCCCGTTCCGCTGCCTAGTGCCGCAGTTGAGGCCAGGTACGTCAG
TGCTTTCATGATACTGCGCGTAAGCGCCGTGTGCGTGGCATATTCACTGC
AGCAAGGTCGCTGGCGTGGCAAGCGCGCCTTCGCGTCGCCCGTGCCGCTG
CCCACTGCCGCAACCGAGGCCAGGTGCGTTGTTGCTCTTATGATGATGCT
TGTACAGGTTACCCTAGCCCTCGGCAAACAGCCGTAATCCCCCCTGTATC
TCGCACTTGAGCAGGGCAGCGCGCGTTCGCATCCCCCGTGCCGCTTCCCA
CCGCTGCAGTCGAGGCCAGGTACTTCAATTCTTTCATGATGGCGATTGTA
CAGGTTGCCCTAACCCTCAGCAAACAGCCGTAATGCCTATATCCGCTTGA
CCTGTGGCCAAGCGCGCCTTCGCGTAGCCCGTGCCGCTGCCCACTGCCGC
AGCTGACGCCAGGTGCGCCAGTGCTCTCGTAGTCCTGCTGTAAGGGTTAC
TCGTGTTGACTCTAGAATTCGCCAGGCCTATGGCCAAGCGCGCATTCGCA
TCGCCCGTGCCGCTGCCCGCTGGCGCAACCGACGGCAGGTGCGTCTGCGC
TCTTATGATGATGCTTGTACAGGTTACTCTGATCCGCGGCAAACGGCCGT
AATCCCTCCTGTATCTGGCACTTTAAGTTCCGAATTCGCCAGGCCTAGGG
CCAGGCGCGCATTTGCGTCGCCTGAGCCATTCCCTGCCCACTGCCGAAGC
CGACGCCAGGCACTTGAGCGCTTCTTCGGTATTTGCGGAAGGTCTAGGGT
CAGGGTTAGGGTTAGGGCTGACACGATTTTGGGCAGGGCCCCCTTGCTGC
GTTGGTGCAACGCTAACACTAACCCTAGCCCTGACTTTAGCCCTGTGAGT
GCTCCCATAATTCTGCTCGCAATGCGCCAGGTACTACTGGCAGCTGGGGC
CCACCCGCCGCACTTCTACGCTTCCTGTCCCTGGCACTTGCACTCAGAAA
CTGCATGGCATATACGTCCACATTTTATTTCTTGTGTGTTGCCGCCTGTG
CCGCTGCCCGCTGCCGCAACCGCCACCCAACAATAGATAGACAGCGCTCT
GCACATTGCAGCTCAACTTAAAGTTGAAGCCTGCTGGCGGGCCGTGAAGG
TTGCTGTGCCCCTCACTTTTTGCCGCAACATGGCGCCACTTTGTCTGTGC
CTCTTACTCTTTGCCGCAACATGGCGCCACTTCCGCCACTTTTGCCTGTC
ACCGCAGCGTGCCGGCAGAAGCGACCGCCGCCGCCGACAGCGCCGCCGCG
CCCGCCGCCGACAGCGAGCCGAGCGACGCTACCGCTGCTGCGGCTGCAGC
TGCGGCCGTCATCAATGCAGCGGTGGACGCCGCCACCAACGAAGCCAGCA
CCAAGGCTGACGTGGAGGCTGTTGCAGGCGCTGAGAGTGGCGACGGTGGT
GGCGATGCATAGCCTTGAGCGCCGAGTCGTGCATGCGTGCGCATCTGCGG
CGGCGGCCACCTGTTTCGGCCGTGCCACAGTCAGGTGTTGTCGGCGGCGG
CAGGCGTTGGCGGCACGAATGTCGAAGAACGTGTACGT

Coding sequence (CDS) from alignment at Contig_112:366534..370471+

>mRNA_15534 ID=mRNA_15534|Name=jgi.p|Trimin1|8851|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=489bp|location=Sequence derived from alignment at Contig_112:366534..370471+ (Tribonema minus UTEX_B_3156 )
ATGACGGGGATGCCCATGATTCCCATCGGCGTCATGACCCCTGGCCAGCT
CGCGGCCATCAAAGCCAAGAAGCAGGAAGAGGAGCAGAGGGCCAACTCCC
CCCCTCCCGCAGAGGACACCCCTGCCCCCGCCGCCCCCGAAGCTGAAGCG
CCTGCGGCCGGCAGCATTGCGATTGCGCACGCCAACCTTGCGCGCCCAAC
GCAGGGGCGCAAGCGGCCACCGGCCATGGCCAAGCGCGCCTTCGCGTCGC
CCGTTCCGCTGCCTAGTGCCGCAGTTGAGGCCAGCGTGCCGGCAGAAGCG
ACCGCCGCCGCCGACAGCGCCGCCGCGCCCGCCGCCGACAGCGAGCCGAG
CGACGCTACCGCTGCTGCGGCTGCAGCTGCGGCCGTCATCAATGCAGCGG
TGGACGCCGCCACCAACGAAGCCAGCACCAAGGCTGACGTGGAGGCTGTT
GCAGGCGCTGAGAGTGGCGACGGTGGTGGCGATGCATAG