mRNA_15532 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|352221 vs. uniprot
Match: A0A836CNB5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB5_9STRA) HSP 1 Score: 699 bits (1805), Expect = 2.140e-251 Identity = 379/379 (100.00%), Postives = 379/379 (100.00%), Query Frame = 2
Query: 44 MTPLRALALACGVASCATAFQVPSSGAAATKQGRRWGNVSGGCRRSADGVALAAKKRVRKRTTKEDVPFEPEDGVEYIKLPPLPSELSRSASLAEIENEANANLIELLQGKVAPVGSLLDSEMGSAVGREGAGEVKSKKYSFDLDIELPVESESKDGEDTKDSSATAAPRIDFKADLKPTTEGVMPLPDLKELGKKIAKRQAEVSAQPAKSKIGRGDTKSFTKLLELDPEADSDMSLFNQEGYDYMSAALGEGQPFVGLPNSYLQSGHTVLAVLCVLCGFVVYPGFPLTELPYDLRSFLQRGLMITYVINAAMAAAAFGKAKSVGQPPVFWAVKTLVLGGLAYNELAQXXXXXXXXXXXXXQIEPPKLKKKGKGGRRNS 1180
MTPLRALALACGVASCATAFQVPSSGAAATKQGRRWGNVSGGCRRSADGVALAAKKRVRKRTTKEDVPFEPEDGVEYIKLPPLPSELSRSASLAEIENEANANLIELLQGKVAPVGSLLDSEMGSAVGREGAGEVKSKKYSFDLDIELPVESESKDGEDTKDSSATAAPRIDFKADLKPTTEGVMPLPDLKELGKKIAKRQAEVSAQPAKSKIGRGDTKSFTKLLELDPEADSDMSLFNQEGYDYMSAALGEGQPFVGLPNSYLQSGHTVLAVLCVLCGFVVYPGFPLTELPYDLRSFLQRGLMITYVINAAMAAAAFGKAKSVGQPPVFWAVKTLVLGGLAYNELAQXXXXXXXXXXXXXQIEPPKLKKKGKGGRRNS
Sbjct: 1 MTPLRALALACGVASCATAFQVPSSGAAATKQGRRWGNVSGGCRRSADGVALAAKKRVRKRTTKEDVPFEPEDGVEYIKLPPLPSELSRSASLAEIENEANANLIELLQGKVAPVGSLLDSEMGSAVGREGAGEVKSKKYSFDLDIELPVESESKDGEDTKDSSATAAPRIDFKADLKPTTEGVMPLPDLKELGKKIAKRQAEVSAQPAKSKIGRGDTKSFTKLLELDPEADSDMSLFNQEGYDYMSAALGEGQPFVGLPNSYLQSGHTVLAVLCVLCGFVVYPGFPLTELPYDLRSFLQRGLMITYVINAAMAAAAFGKAKSVGQPPVFWAVKTLVLGGLAYNELAQXXXXXXXXXXXXXQIEPPKLKKKGKGGRRNS 379
BLAST of jgi.p|Trimin1|352221 vs. uniprot
Match: D8LNR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNR0_ECTSI) HSP 1 Score: 226 bits (576), Expect = 1.960e-65 Identity = 143/309 (46.28%), Postives = 180/309 (58.25%), Query Frame = 2
Query: 281 LPPLPSELSRSASLAEIENEANANLIELLQGKVAPVGSLLDSEMGSAVGREG-------AGEVKSKKYS-FDLDIELPVESES-KDGEDTKDSSATAAPRIDFKADLKPTTEGVMPLPDLKELGKKIAKRQAEVSAQPAK--SKIGRGDTKSFTKLLELDPEADSDMSLFNQEGYDYMSAALGEGQPFVGLPNSYLQSGHTVLAVLCVLCGFVVYPGFPLTELPYDLRSFLQRGLMITYVINAAMAAAAFGKAKSVGQPPVFWAVKTLVLGGLAYNELAQXXXXXXXXXXXXXQIEPPKLKKKGKGGRR 1174
+PP+PSEL A + + + L P + D EM G G + E K KYS FDLD+ELP+ESES K G+ S + +GVMPLPD +EL KK K+ E A +K+ RG+ +FTKLLELDPEADS+ +LF E YD S+ LGEG+PFVG+ NSYLQSGHTVL L +LCGFV PGFPLT LPYD+R FL+ GL++TYVINA +A ++ +AK +GQP FWAVK VLGGL++NEL+Q IEP K+K G RR
Sbjct: 124 MPPMPSELGVDAVMTAQKFQGEDMLSP---AAFQPKPEVSDLEMAGGGGLSGRDLLDEPSTERKRSKYSGFDLDVELPMESESRKSGKGGLGSVMSP--------------DGVMPLPDFRELAKKPRKKDREQKATKVDEANKVERGNMAAFTKLLELDPEADSEEALFTTESYDAFSSVLGEGKPFVGIANSYLQSGHTVLLALVLLCGFVEIPGFPLTSLPYDVREFLKTGLLVTYVINAGIAYLSYLEAKRIGQPAGFWAVKGFVLGGLSFNELSQ--------------IEPVKVKPTGGRERR 401
BLAST of jgi.p|Trimin1|352221 vs. uniprot
Match: A0A7S2V0V8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0V8_9STRA) HSP 1 Score: 149 bits (377), Expect = 1.520e-36 Identity = 94/223 (42.15%), Postives = 133/223 (59.64%), Query Frame = 2
Query: 449 KSKKYSFDLD------IELPVESESKDGEDTKDSSATAAPRIDFKADLKPTTEGVMPLPDLKELGKKIAKRQAEVSAQ-PAK-SKIGRGDTKSFTKLLELDPEADSDMSLFNQEGYDYMSAALGE-GQPFVG-LPNSYLQSGHTVLAVLCVLCGFVVYPGFPLTELPYDLRSFLQRGLMITYVINAAMAAAAFGKAKSVGQPPVFWAVKTLVLGGLAYNELAQ 1087
K KK F++D IELPV SE G +A D +A+ T GV LPDLK++ + K++A Q PAK +++ R D + F ++ E++P D S+F+ + YD +A LG +P G + YLQ+GHTVL + +LC + YPG PLTELP ++R FL+ GL++ Y INA +A + KA+++ QPP FW KTL+LGGLAYNEL Q
Sbjct: 195 KKKKKGFNIDEFDPDDIELPVPSERLAG------AADLTTSFDKQAE---ETTGVFSLPDLKDVSARPKKQEAPEPVQAPAKRARLTRSDVEEFRRMTEIEPGFDP--SMFDDDKYDLANAVLGTYARPMFGAIDQGYLQAGHTVLLAVVLLCANIEYPGNPLTELPTEIRDFLKTGLVVNYAINAVLAVFSIFKARNLSQPPQFWFGKTLLLGGLAYNELTQ 406
BLAST of jgi.p|Trimin1|352221 vs. uniprot
Match: A0A7S2UGS9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UGS9_9STRA) HSP 1 Score: 131 bits (329), Expect = 1.390e-31 Identity = 81/190 (42.63%), Postives = 110/190 (57.89%), Query Frame = 2
Query: 602 LPDLKELGKKIA-KRQAEVSA---QPAKSKIGRGDTKSFTKLLE-LDPEADSDMSLFNQEGYDYMSAALGEG-QPFVGLPNSYLQSGHTVLAVLCVLCGFVVYPGFPLTELPYDLRSFLQRGLMITYVINAAMAAAAFGKAKSVGQPPVFWAVKTLVLGGLAYNELAQXXXXXXXXXXXXXQIEPPKLKK 1153
+PD+KE+ K + K++ E A + ++KI RGD + +++E + P AD D S+F +GY +SA LGEG +PF+G+P+ LQ GH + A+ VLC FV YPGFPLT LP LR LQ GL Y IN M A KA Q P+ WAVKT +G +AY++L Q QIE K +K
Sbjct: 41 IPDMKEMLKNMERKKEKEREAYDFEKNQAKIQRGDKAALKEMMETMGPYADMDDSIFESDGYSTVSALLGEGSKPFLGIPSGPLQVGHFIGALGIVLCAFVEYPGFPLTNLPSPLRGALQGGLGTIYFINLGMGVMAGLKASERNQSPILWAVKTFSVGAIAYDQLMQLPTTD--------QIEQAKARK 222
BLAST of jgi.p|Trimin1|352221 vs. uniprot
Match: A0A7S2UEC7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEC7_9STRA) HSP 1 Score: 131 bits (329), Expect = 1.430e-30 Identity = 81/190 (42.63%), Postives = 110/190 (57.89%), Query Frame = 2
Query: 602 LPDLKELGKKIA-KRQAEVSA---QPAKSKIGRGDTKSFTKLLE-LDPEADSDMSLFNQEGYDYMSAALGEG-QPFVGLPNSYLQSGHTVLAVLCVLCGFVVYPGFPLTELPYDLRSFLQRGLMITYVINAAMAAAAFGKAKSVGQPPVFWAVKTLVLGGLAYNELAQXXXXXXXXXXXXXQIEPPKLKK 1153
+PD+KE+ K + K++ E A + ++KI RGD + +++E + P AD D S+F +GY +SA LGEG +PF+G+P+ LQ GH + A+ VLC FV YPGFPLT LP LR LQ GL Y IN M A KA Q P+ WAVKT +G +AY++L Q QIE K +K
Sbjct: 140 IPDMKEMLKNMERKKEKEREAYDFEKNQAKIQRGDKAALKEMMETMGPYADMDDSIFESDGYSTVSALLGEGSKPFLGIPSGPLQVGHFIGALGIVLCAFVEYPGFPLTNLPSPLRGALQGGLGTIYFINLGMGVMAGLKASERNQSPILWAVKTFSVGAIAYDQLMQLPTTD--------QIEQAKARK 321
BLAST of jgi.p|Trimin1|352221 vs. uniprot
Match: A0A7S1UFT4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UFT4_9STRA) HSP 1 Score: 125 bits (315), Expect = 2.380e-28 Identity = 68/170 (40.00%), Postives = 95/170 (55.88%), Query Frame = 2
Query: 590 GVMPLPDLKELGKKIAKRQAEVSAQPAKSKIGRGDTKSFTKLL---ELDPEADSDMSLFNQEGYDYMSAALGEG-QPFVGLPNSYLQSGHTVLAVLCVLCGFVVYPGFPLTELPYDLRSFLQRGLMITYVINAAMAAAAFGKAKSVGQPPVFWAVKTLVLGGLAYNELAQ 1087
G + LPD ++ KK + + I ++ LL ELDP AD+D F E YD ++A +GEG +PF+G+P YLQ+GH++L ++ ++C FV PG PLTELP +R FL GL++TY INA A A+ QP W +K LGGLA EL +
Sbjct: 187 GTLKLPDFEDFRKKQEAXXXXXXERGVTNPIAELQERTRDNLLSELELDPFADADFERFQAEEYDLIAALIGEGSRPFIGIPLPYLQTGHSMLFLITLVCAFVEVPGNPLTELPQPIRDFLSTGLLVTYAINAGTVLLALSAAEQRRQPKALWGIKCFFLGGLALKELTE 356
BLAST of jgi.p|Trimin1|352221 vs. uniprot
Match: A0A7R9ZMK0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZMK0_9STRA) HSP 1 Score: 125 bits (315), Expect = 2.550e-28 Identity = 65/139 (46.76%), Postives = 88/139 (63.31%), Query Frame = 2
Query: 674 SKIGRGDTKSFTKLLELDPEADSDMSLFNQEGYDYMSAALGE-GQPFVGLPNSYLQSGHTVLAVLCVLCGFVVYPGFPLTELPYDLRSFLQRGLMITYVINAAMAAAAFGKAKSVGQPPVFWAVKTLVLGGLAYNELAQ 1087
++I R DT +F +LLE P AD+D SLF +E Y ++A LGE + F+ +P+ LQ GH + A++ +L FV YPGFPLT LP LR LQ GL Y +NA +A + KAK GQP W VK +GG+AY++L Q
Sbjct: 215 NRIDRKDTDAFMRLLEQQPYADADDSLFEEEEYTIVNALLGERAKSFLAIPSGPLQVGHFIGALVIILMAFVEYPGFPLTNLPTQLRGALQGGLATVYFVNALIAVVSVFKAKERGQPVSLWIVKCFTVGGIAYDQLTQ 353
BLAST of jgi.p|Trimin1|352221 vs. uniprot
Match: W7TR79_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TR79_9STRA) HSP 1 Score: 122 bits (306), Expect = 6.220e-27 Identity = 82/209 (39.23%), Postives = 111/209 (53.11%), Query Frame = 2
Query: 467 FDLDIELPVESESKDGEDTKDSSATAAPRIDFKADLKPTTEGVMPLPDLKELGKK----IAKRQAEVSAQPAKSKIGRGDTKSFTKLLELDPEADSDMSLFNQEGYDYMSAALGEGQPFVGLPNSYLQSGHTVLAVLCVLCGFVVYPGFPLTELPYDLRSFLQRGLMITYVINAAMAAAAFGKAKSVGQPPVFWAVKTLVLGGLAYNEL 1081
+D +ELP+ SE T S + A + D + K T LP L ELGKK I +RQ E + K EL+P D YD SA LGEG+P +G+ YLQS HTV+ ++ +LC F+ +PGFPLT PY+LR FL++GL+ Y+INA +A + +A+ Q FWA+K VLG LA+NEL
Sbjct: 208 YDPTLELPIPSE------TVVSLSDLATKFDAAIETKGTA-----LPTLAELGKKAKVSILRRQLEEEEKATK---------------ELEPIDD----------YDLSSAILGEGRPVLGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNEL 380
BLAST of jgi.p|Trimin1|352221 vs. uniprot
Match: A0A0G4FEF3_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FEF3_VITBC) HSP 1 Score: 121 bits (304), Expect = 3.460e-26 Identity = 71/175 (40.57%), Postives = 106/175 (60.57%), Query Frame = 2
Query: 602 LPDLKELGKKIAKRQ------AEVSAQPAKSKIGRGDTKSFTKLLELDPEADSDMSLF--NQEGYDYMSAALGEG----QPFVG-LPNSYLQSGHTVLAVLCVLCGFVVYPGFPLTELPYDLRSFLQRGLMITYVINAAMAAAAFGKAKSVGQPPVFWAVKTLVLGGLAYNELAQ 1087
+P+L+E+ ++ A+R+ A+++A A+ KI R DT+ + L DP AD+ F +++ D + A GEG QPF+G +P S+LQ+GH VL + LCG V PG PLT LP +R+F GL + + +N ++A + A + QP FWA KTL+LGGLAY+EL Q
Sbjct: 216 IPELEEVFEEAARRKLQQEKRADINAAKAREKIRRSDTERIREELLYDPFADTQFERFVEDRKPVDAVGAVFGEGLAPAQPFLGFIPTSFLQTGHLVLLFVVALCGLVEDPGNPLTNLPLPIRNFFVTGLGLVFAVNVVLSALSISPAIARKQPWYFWAFKTLLLGGLAYDELMQ 390
BLAST of jgi.p|Trimin1|352221 vs. uniprot
Match: A0A7S2PYH9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PYH9_9STRA) HSP 1 Score: 117 bits (292), Expect = 5.220e-25 Identity = 75/199 (37.69%), Postives = 97/199 (48.74%), Query Frame = 2
Query: 656 SAQPAKSKIGRGDTKSFTKLLELDPEADSDMSLFNQEG---YDYMSAALGEGQP----------------------FVGLPNSYLQSGHTVLAVLCVLCGFVVYPGFPLTELPYDLRSFLQRGLMITYVINAAMAAAAFGKAKSVGQPPVFWAVKTLVLGGLAYNELAQXXXXXXXXXXXXXQIEPPKLKKKGKGGRRN 1177
S P K+KI R D ++TKLLE+DP AD D S F E + A LG+ +P F+G+ + LQ GH + A+ VL FV YPGFPLT+LP LR LQ GL Y IN MA A A QP + W KT +GG+AY++L Q + E KL+ G+G RR+
Sbjct: 198 SVIPTKNKIKRSDVAAYTKLLEMDPLADEDSSYFEDENEGKIGIIQALLGDVEPGVGTDTDEASNMSGNRVQKKTSFLGIGSGPLQVGHFIGALGVVLMAFVEYPGFPLTDLPSQLRGALQGGLATIYGINLVMAVIAALSAPGRNQPALLWGAKTFAVGGIAYDQLMQIPTPKELEERAKKEAEMNKLR--GRGSRRS 394 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352221 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15532 ID=mRNA_15532|Name=jgi.p|Trimin1|352221|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1514bp|location=Sequence derived from alignment at Contig_112:350703..359351- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTTTCAAATCGTGCCATCTGAAGACTTTGCTTACCTCGCGCTCATGACGCback to top protein sequence of jgi.p|Trimin1|352221 >Trimin1|352221|estExt_Genemark1.C_Ctg_1120043 ID=Trimin1|352221|estExt_Genemark1.C_Ctg_1120043|Name=jgi.p|Trimin1|352221|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=380bp MTPLRALALACGVASCATAFQVPSSGAAATKQGRRWGNVSGGCRRSADGVback to top mRNA from alignment at Contig_112:350703..359351- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15532 ID=mRNA_15532|Name=jgi.p|Trimin1|352221|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=8649bp|location=Sequence derived from alignment at Contig_112:350703..359351- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_112:350703..359351- >mRNA_15532 ID=mRNA_15532|Name=jgi.p|Trimin1|352221|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1140bp|location=Sequence derived from alignment at Contig_112:350703..359351- (Tribonema minus UTEX_B_3156 )back to top |