mRNA_15530 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|8833
Unique Name	mRNA_15530
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|8833 vs. uniprot
Match: A0A835ZGC4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC4_9STRA)

HSP 1 Score: 117 bits (292), Expect = 4.410e-27
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2

Query:   59 MKCTAVAFAALLAVASANSGANLNKWVAIRGGGWGNDVQQGADEASRGVKNAGRXXXXXXXXXXXXXXXXXXXXXXXXXXKFFGAGDKARD 331
            MKCTAVAFAALLAVASANSGANLNKWVAIRGGGWGNDVQQGADEASRGVKNAGRXXXXXXXXXXXXXXXXXXXXXXXXXXKFFGAGDKARD
Sbjct:    1 MKCTAVAFAALLAVASANSGANLNKWVAIRGGGWGNDVQQGADEASRGVKNAGRXXXXXXXXXXXXXXXXXXXXXXXXXXKFFGAGDKARD 91

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|8833 vs. uniprot

BLAST of jgi.p|Trimin1|8833 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZGC4_9STRA	4.410e-27	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_112	contig	Contig_112:342552..344512 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|8833\|CE8832_237
Hectar predicted targeting category	chloroplast
TranscriptId	9155
Track	FilteredModels1
ProteinId	8833

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|8833	gene_15530	Tribonema minus UTEX_B_3156	gene	Contig_112 342552..344512 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|8833	Trimin1\|8833\|CE8832_237	Tribonema minus UTEX_B_3156	polypeptide	Contig_112 342610..344436 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_15530_1	exon_15530_1	Tribonema minus UTEX_B_3156	exon	Contig_112 342552..342820 +
exon_15530_2	exon_15530_2	Tribonema minus UTEX_B_3156	exon	Contig_112 343429..343781 +
exon_15530_3	exon_15530_3	Tribonema minus UTEX_B_3156	exon	Contig_112 344155..344512 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_15530	UTR5_15530	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_112 342552..342609 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_15530	CDS_15530	Tribonema minus UTEX_B_3156	CDS	Contig_112 342610..342820 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_15530	UTR3_15530	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_112 344437..344512 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_112:342552..344512+
coding sequence from alignment at Contig_112:342552..344512+

spliced messenger RNA

>mRNA_15530 ID=mRNA_15530|Name=jgi.p|Trimin1|8833|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=980bp|location=Sequence derived from alignment at Contig_112:342552..344512+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCACTCAAACACCACGCTACCCAGCACATTCAACACCAACACACAACAC
CAGCAAACATGAAGTGCACCGCTGTAGCTTTCGCTGCGCTCCTGGCCGTC
GCCTCCGCCAACAGCGGCGCAAACCTGAACAAGTGGGTTGCCATCAGGGG
CGGAGGCTGGGGCAATGATGTGCAGCAAGGGGCGGACGAGGCATCTCGTG
GCGTGAAGAACGCTGGCCGCGATGCCTCACGTAATGCCAAGGGCCTCGGC
AGGGACATCAAGTCCAACGCCGACAACGCAGGGCAGACGCTCAAGCAGAA
GTTCTTCGGCGCCGGCGACAAGGCGCGCGACGCAGGCCGCTCCACCCGCG
ACAGCGCGCGCGGCGCCTCCCGCGACGCGCAGCGCACCGCCGACAACGCT
GGCCGCAACGCCCAGTCCTGGGCTGACGACGCGGGCAGCAGCACGCGCAA
CGCGGCGCGCAACGCCGGCGACTCCATCAAGGACGTGACGCGTGGCGCAC
GTGACAACCTGGGTGATGCGGGCCACGCCGTCGCGGAGAATGCGCGCAGC
GCGGGGCGCAACGTGCGCGACGGCGCGGGCAACATTGGCGACAAGGCGCG
CGATGTGGGCCGCAGCGCAAAGGACACCATCACCGGCAACGCGAACGCCG
CGGGCGACAAGGCGCGCGACACGGGCCGCGACGCCAAGCACAACGCGCGC
AACGCGGGTGACTCCGCCAAGCACCAGGCGCGCAACGTCGGCGACTCCGC
TCGCGACGCCGGCCGCAACATAAAGCACAGCGCCTCCAACACGGCGTCCA
ACGTGCAGGACGGCGTTGAGGACGTAGCACACAAGGGGCAGAACGCGTTC
TCGCGCGCCGTGGGGGGGATCCGCGACACCTTCAGGAACATCTTCAACGC
CTAAAGTGTAACTGCTTTGCAGTTGAAGTTGTCATTGGTAGGGGAGGGGG
TCAGCACAGCGGTCTTGGCACGTTGCCGTG

protein sequence of jgi.p|Trimin1|8833

>Trimin1|8833|CE8832_237 ID=Trimin1|8833|CE8832_237|Name=jgi.p|Trimin1|8833|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=282bp
MKCTAVAFAALLAVASANSGANLNKWVAIRGGGWGNDVQQGADEASRGVK
NAGRDASRNAKGLGRDIKSNADNAGQTLKQKFFGAGDKARDAGRSTRDSA
RGASRDAQRTADNAGRNAQSWADDAGSSTRNAARNAGDSIKDVTRGARDN
LGDAGHAVAENARSAGRNVRDGAGNIGDKARDVGRSAKDTITGNANAAGD
KARDTGRDAKHNARNAGDSAKHQARNVGDSARDAGRNIKHSASNTASNVQ
DGVEDVAHKGQNAFSRAVGGIRDTFRNIFNA*

mRNA from alignment at Contig_112:342552..344512+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_15530 ID=mRNA_15530|Name=jgi.p|Trimin1|8833|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1961bp|location=Sequence derived from alignment at Contig_112:342552..344512+ (Tribonema minus UTEX_B_3156 )
CTCACTCAAACACCACGCTACCCAGCACATTCAACACCAACACACAACAC
CAGCAAACATGAAGTGCACCGCTGTAGCTTTCGCTGCGCTCCTGGCCGTC
GCCTCCGCCAACAGCGGCGCAAACCTGAACAAGTGGGTTGCCATCAGGGG
CGGAGGCTGGGGCAATGATGTGCAGCAAGGGGCGGACGAGGCATCTCGTG
GCGTGAAGAACGCTGGCCGCGATGCCTCACGTAATGCCAAGGGCCTCGGC
AGGGACATCAAGTCCAACGGTGAGTGTGGCTTCGCAGGTCTTGAGTGATC
GCCGCGGGCACTACAAGCGCCTGCATTCGAATCTTCACCACGTACGTGCT
GATGTTGCACTAGGGCACAGCACACTGTCTGGCCTTGGTGCCTTTCTGTT
ACCCGCTTGTGTACTTCTGCAACCGCCACCTGCTGCGTCGGTGCCAGCGG
CTGGTCTAACATGCGCAAGCTTGAGCTGGGTGGAATCCTGCTGGGCTTGA
AGTAGGTCCATGCAGCGATGATCTTGCCTTCCATAGCTTGCCATATCTCA
CTGTGTATAGGACTGCTGACGTATAATAAGTACATCACGCTTACGCAGCA
TTCACATGTGGCTATGCACTCGCTGCACCACAGCGTCAGTTGGATGGTTT
TTAGCCATGAGAGCTGTTCCGCAATCCTTCACTGCTGTTATATGGTTGCT
GAAGTTGGTTGAAACCTCAAGAATGCCAGTGTCCAACGTACAGTGCTCTG
GACCACGGCGCCTGTCATCCATGTTACACACCCCCTTCACATGAACGCCG
CAGCACCACCATCCCCTCAATCGCATCCAGATTTCTATTTTCCCCTGACC
CCCCCCCCCCTTTCCTACACCCCACAGCCGACAACGCAGGGCAGACGCTC
AAGCAGAAGTTCTTCGGCGCCGGCGACAAGGCGCGCGACGCAGGCCGCTC
CACCCGCGACAGCGCGCGCGGCGCCTCCCGCGACGCGCAGCGCACCGCCG
ACAACGCTGGCCGCAACGCCCAGTCCTGGGCTGACGACGCGGGCAGCAGC
ACGCGCAACGCGGCGCGCAACGCCGGCGACTCCATCAAGGACGTGACGCG
TGGCGCACGTGACAACCTGGGTGATGCGGGCCACGCCGTCGCGGAGAATG
CGCGCAGCGCGGGGCGCAACGTGCGCGACGGCGCGGGCAACATTGGCGAC
AAGGCGCGCGATGTGGGCCGCAGCGCAAAGGTGCGCTTCTCTCTCTGCCG
CTCTGCGCGTGCTAGCTCCTCACCGCATGCTTCATTGAGGGTCGAGTGTG
AGTGGCTGCAGTCTAGAAATTGGCCTCATTGCAAGGAGCTGTGTACCAGT
TTCCGAGCCCTGGTGGCATCTGCTGTGTTTGCTCTCTGCGCCTGCACTGC
ATTGTGCCCTGTCCGCATCTCTTGCGAGCATGCACAACCGCTCAAAAAAT
GGTCTGATTGCAGTTTGTACAGCCACCACCTACATCGTCGAATGCACCTC
TGACCCCCATCGATCCCCTGCAAACATGCCCTGTGCCCACCTTCATTAAC
CTCTTCTAAACACCTCCCCCCCCCCCCCCCTCCCTTGTGCCCCCCATTTG
CAGGACACCATCACCGGCAACGCGAACGCCGCGGGCGACAAGGCGCGCGA
CACGGGCCGCGACGCCAAGCACAACGCGCGCAACGCGGGTGACTCCGCCA
AGCACCAGGCGCGCAACGTCGGCGACTCCGCTCGCGACGCCGGCCGCAAC
ATAAAGCACAGCGCCTCCAACACGGCGTCCAACGTGCAGGACGGCGTTGA
GGACGTAGCACACAAGGGGCAGAACGCGTTCTCGCGCGCCGTGGGGGGGA
TCCGCGACACCTTCAGGAACATCTTCAACGCCTAAAGTGTAACTGCTTTG
CAGTTGAAGTTGTCATTGGTAGGGGAGGGGGTCAGCACAGCGGTCTTGGC
ACGTTGCCGTG

Coding sequence (CDS) from alignment at Contig_112:342552..344512+

>mRNA_15530 ID=mRNA_15530|Name=jgi.p|Trimin1|8833|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=846bp|location=Sequence derived from alignment at Contig_112:342552..344512+ (Tribonema minus UTEX_B_3156 )
ATGAAGTGCACCGCTGTAGCTTTCGCTGCGCTCCTGGCCGTCGCCTCCGC
CAACAGCGGCGCAAACCTGAACAAGTGGGTTGCCATCAGGGGCGGAGGCT
GGGGCAATGATGTGCAGCAAGGGGCGGACGAGGCATCTCGTGGCGTGAAG
AACGCTGGCCGCGATGCCTCACGTAATGCCAAGGGCCTCGGCAGGGACAT
CAAGTCCAACGCCGACAACGCAGGGCAGACGCTCAAGCAGAAGTTCTTCG
GCGCCGGCGACAAGGCGCGCGACGCAGGCCGCTCCACCCGCGACAGCGCG
CGCGGCGCCTCCCGCGACGCGCAGCGCACCGCCGACAACGCTGGCCGCAA
CGCCCAGTCCTGGGCTGACGACGCGGGCAGCAGCACGCGCAACGCGGCGC
GCAACGCCGGCGACTCCATCAAGGACGTGACGCGTGGCGCACGTGACAAC
CTGGGTGATGCGGGCCACGCCGTCGCGGAGAATGCGCGCAGCGCGGGGCG
CAACGTGCGCGACGGCGCGGGCAACATTGGCGACAAGGCGCGCGATGTGG
GCCGCAGCGCAAAGGACACCATCACCGGCAACGCGAACGCCGCGGGCGAC
AAGGCGCGCGACACGGGCCGCGACGCCAAGCACAACGCGCGCAACGCGGG
TGACTCCGCCAAGCACCAGGCGCGCAACGTCGGCGACTCCGCTCGCGACG
CCGGCCGCAACATAAAGCACAGCGCCTCCAACACGGCGTCCAACGTGCAG
GACGGCGTTGAGGACGTAGCACACAAGGGGCAGAACGCGTTCTCGCGCGC
CGTGGGGGGGATCCGCGACACCTTCAGGAACATCTTCAACGCCTAA