mRNA_15527 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|352218
Unique Name	mRNA_15527
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|352218 vs. uniprot
Match: A0A835ZJ42_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ42_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 7.600e-16
Identity = 261/264 (98.86%), Postives = 261/264 (98.86%), Query Frame = 1

Query:    1 MVYTRTLATVAAALALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANRTFSKAGRYFDNVVTDLTDRAQHAKENVQDAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFGGKVKHAAVDIKDAVGDGINNVKDAVKDVFRD 792
            MVYTRTLATVAAALALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANRTFSKAGRYFDNVVTDLTDRAQHAKENVQDAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   GKVKHAAVDIKDAVGDGINNVKDAVKDVFRD
Sbjct:    1 MVYTRTLATVAAALALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANRTFSKAGRYFDNVVTDLTDRAQHAKENVQDAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKVKHAAVDIKDAVGDGINNVKDAVKDVFRD 264

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352218 vs. uniprot

BLAST of jgi.p|Trimin1|352218 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZJ42_9STRA	7.600e-16	98.86	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_112	contig	Contig_112:306930..310716 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|352218\|estExt_Genemark1.C_Ctg_1120037
Hectar predicted targeting category	chloroplast
TranscriptId	352540
Track	FilteredModels1
ProteinId	352218

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352218	gene_15527	Tribonema minus UTEX_B_3156	gene	Contig_112 306930..310716 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352218	Trimin1\|352218\|estExt_Genemark1.C_Ctg_1120037	Tribonema minus UTEX_B_3156	polypeptide	Contig_112 307211..310716 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_15527_4	exon_15527_4	Tribonema minus UTEX_B_3156	exon	Contig_112 306930..307300 -
exon_15527_3	exon_15527_3	Tribonema minus UTEX_B_3156	exon	Contig_112 307900..308274 -
exon_15527_2	exon_15527_2	Tribonema minus UTEX_B_3156	exon	Contig_112 309244..309410 -
exon_15527_1	exon_15527_1	Tribonema minus UTEX_B_3156	exon	Contig_112 310554..310716 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_15527	UTR3_15527	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_112 306930..307210 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_15527	CDS_15527	Tribonema minus UTEX_B_3156	CDS	Contig_112 310554..310716 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_112:306930..310716-
coding sequence from alignment at Contig_112:306930..310716-

spliced messenger RNA

>mRNA_15527 ID=mRNA_15527|Name=jgi.p|Trimin1|352218|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1076bp|location=Sequence derived from alignment at Contig_112:306930..310716- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTACACAAGGACTCTCGCCACCGTCGCCGCCGCCCTCGCGCTGAT
CAGCGCTTCGTCGGGCTTCGTGATCGCTGGCAGCAGGGCAGGCCTCACCA
CCAGCAGGCCTGCGTCGACACTGCGCATGAGCAGCGATGTGGAGAGGGAT
GTGAAGAGGACAGCCCGTGACGCCTCCGAGACGGCCAGCGACCTGGGCAA
TCAGGCGGAGGGCGCGGCGCGTGATGCTGGTGACTCTGCCAACAGGACCT
TCAGCAAGGCCGGCAGATACTTTGACAATGTCGTGACGGATCTTACCGAC
AGGGCACAGCACGCCAAGGAGAATGTCCAGGATGCCGTCAACCATGGCAC
CAATGATGCCCGCGACTATGCGCGCAAGGCCAAGGCGTCCGCCGAAGACA
TCGCGCACCGCGCCGAAGACCAGTACAACAACATCACCGGCGAGGCGAAG
GACCGCATCAATGATCTCAGCCGCAGCACGCGCAACGCCGCAGACAGCGC
TCAGCAGCGGGCCGCAGAATTCGGCGACAAGGCCAAGAGCTATGAGAAGA
AGTCTGAGGCGTCTGCGCGGGAGGTTAGCGAGAGGGCGCGCAGGGAGGCA
GATGGAATTGCGAGTGAGGCGAGCGACAGGGCCAATGAGCTGGCGCGCAA
TAGCAAGAAGGGCGCGGAGGAGGCTCAGCGCAAGGCGGAGGGCTTTGGCG
GGAAGGTCAAGCATGCCGCGGTGGACATCAAAGACGCCGTTGGCGATGGC
ATCAACAATGTCAAGGATGCCGTCAAGGACGTCTTCAGGGACTGAGCGGC
AGTTACAGCGCGTGTAACAGCTCATGTAGCTGACATGCGGCCGCATCCTG
CACACCGCATGCCGTCAAGGACATCTTCAGGGACTGAGCGGCAGTTACAG
CGCGTGTAACAGCTCATGTAGCTGACATGCGGCCGCATCCTGCACACCGC
GCAGTGCGTAGAGCCGCTGTGTAGATTAGCAGTGCAAGTAGAGGATGGAT
GGGAACATTGGTGATACCCCAATACCCTGGGTGGTTGGTGTTTGAAGTGT
GAGAGGGTACACCCTGTAGACATCGC

protein sequence of jgi.p|Trimin1|352218

>Trimin1|352218|estExt_Genemark1.C_Ctg_1120037 ID=Trimin1|352218|estExt_Genemark1.C_Ctg_1120037|Name=jgi.p|Trimin1|352218|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=265bp
MVYTRTLATVAAALALISASSGFVIAGSRAGLTTSRPASTLRMSSDVERD
VKRTARDASETASDLGNQAEGAARDAGDSANRTFSKAGRYFDNVVTDLTD
RAQHAKENVQDAVNHGTNDARDYARKAKASAEDIAHRAEDQYNNITGEAK
DRINDLSRSTRNAADSAQQRAAEFGDKAKSYEKKSEASAREVSERARREA
DGIASEASDRANELARNSKKGAEEAQRKAEGFGGKVKHAAVDIKDAVGDG
INNVKDAVKDVFRD*

mRNA from alignment at Contig_112:306930..310716-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_15527 ID=mRNA_15527|Name=jgi.p|Trimin1|352218|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3787bp|location=Sequence derived from alignment at Contig_112:306930..310716- (Tribonema minus UTEX_B_3156 )
ATGGTCTACACAAGGACTCTCGCCACCGTCGCCGCCGCCCTCGCGCTGAT
CAGCGCTTCGTCGGGCTTCGTGATCGCTGGCAGCAGGGCAGGCCTCACCA
CCAGCAGGCCTGCGTCGACACTGCGCATGAGCAGCGATGTGGAGAGGGAT
GTGAAGAGGACAGGTGAGCTGTCATGAGACTAAAGATGGCGGCTCATGCA
ACGCTGAGGGACGGTATAGCTGGTATGGTTGCTAATGTACTTTCGGTTTG
CGCGCTGCAGCGAGCCGACAGTGGTACAGAAGTTCAGTGTCCATCCCCAC
AGCGTGTGCTTCTGGCAATCGGTTTTCACTGTGATGAGATGAGAAACGCT
CACCTCAGAGTCAGTTTGCGTGCAACTCTGCCTCACATTGGCTTGCTGTA
ACTTCAAGGTTCTGGTTTCATCAAATCACCCCCGCTGCCACAGCTGCCCT
TTCCGGCAGGACGCAAACTGTGGGTGCGCTTGATGTGTGATACGGCAGTG
TACACAATTAGCACCAATTTGGCAGTTGCTGGATATCACGACATGATGGC
AATTGCTGAACATCAGTACATGGCACATGCCGCTGCACTCCCTCCGGGTG
CAGCAAACAGTATTGCAATCATTCATACGCTGCAAACTGTTGATACCATT
TTCCATGGTCACCAGGCACTGTTGTCATGCGGTCAGCGGCGCAGAGGCAG
TGTAATGGGCACTGCCATGAGTCCTACCTCACGCATGTCATGCCAAAGCC
TGTCACGATGGCAGCGGCCTTGCCGCCAACACTTACCAACTGCTTCAAAT
ACTACATAAAAAAAACTGTACTCATAAGTACACATGATGTGTGGCTTCAT
TTCTTGCAGCCCGAGACGCCTCTGCTTCAAGTAGTACTGTAAAAAGACCT
TTACACTCACATATACTTCTTGAAGTACACGTTATATGTGGCTGCGTTGC
TTGCCGCCAACACCTACCACCTACTTCAAGTAGTCCTGAAGAATTTCATA
CCCACAGAGTACGCGTGATGTGTGCAAGCGACCCGAGACGCCTCTGCTTC
AAGTGATACTTGAAGAAAGTTTTCATACTTCTACTCACAAAGTGGAGGTA
CACGTGATGTGTGACTTTGTCGCTTTGCAGCCCGAGACGTCTCTGCTCCA
AGTAGTACTTGAAAAATTTCAGAACTCACAAAGTACACACGTGATGTGTG
TGGCTTCATCGCTTGCAGCCCGAGACGCCTCTGCCTCAAGTTGTACTTGA
AGAATTGTATACTTTTACTCACAAGTACACGTGATGTGTGGTTTCATCGC
TTGCAGCCCGTGACGCCTCCGAGACGGCCAGCGACCTGGGCAATCAGGCG
GAGGGCGCGGCGCGTGATGCTGGTGACTCTGCCAACAGGACCTTCAGCAA
GGCCGGCAGATACTTTGACAATGTCGTGACGGATCTTACCGACAGGGCAC
AGCACGCCAAGGAGAATGTCCAGGTGTGTATGACTCGAGATTTGGTGTGT
ATGACTCGAGATTTGTTGCTGAAATTTGGTGTCGGAACGTGTTCAGTGCG
CACTGTCTATGTGAAACAGCTGACCTCACTGACAAGATCTCTGAGTGCTT
GTCCACGAGTGCTGCAGGTATGCCAGGCTGTGGGCTTGTGATATGAATGC
ATGTACATTACCGTATGGCGCAGCTCAAGATATTGATGCAGTTCGCCATT
CGCACGCCGACAATTGATACAACCAACAAGAGTCACAGCCATTTCATGCT
CATGCAGCTCTCAGTCGACCCTGTTGTCCAATAGTTCAGTGCCAAGATAC
TTGCAGCGCTGTATTGGTGAGGTCTTCCTGCTCATTAATGATCATGCGTG
GGCATATGAGGCAAACGTCTGTTCCTGAGACAAGTTTGGACTGCTCATTA
ATGATCATGCACTGGCATTTGAGGCAAATGTCTGTACCTGAGACAAATTT
GGACTGCTGGCTTCAAACAGGTCATGTCAAAATGCAGTGACCAGGGTACA
CAAAGGCTGGATTAGCTAGTTGGAGCATGATTTCACTGTTGTTTTAAACA
TAACATGTGCCCGAAGACATTTCGTCTCCATCACAAGCAGTCATGTAATT
GCTCAAGCACTTTTAAAGCACTCATGGTGCTGGTTGACAAATACTCAAAT
CCCCTCAGACGACGTCAACCATGTTGGTACCATCTTGCATCTCATACATG
TACTGAAACATTTCACCTTTACATCAATCTTCAGGAGGCTGTGAACCACG
GCACCGACGATGCGCGCAGCTACGCGCCATATATACTTCTTCCACAGTGC
ACTGTGAAAGGAGAGGCATATCAGTACATAGATGTCAACCACGGCACCGA
CGACGCCCGCAGCTACACGCAGTATTTACTTGATTATATTCTTCATCTTA
CATGTACTGATACTATATCTCTACCGTTTGATCTCTTTTCAGGATGCCGT
CAACCATGGCACCAATGATGCCCGCGACTATGCGCGCAAGGCCAAGGCGT
CCGCCGAAGACATCGCGCACCGCGCCGAAGACCAGTACAACAACATCACC
GGCGAGGCGAAGGACCGCATCAATGATCTCAGCCGCAGCACGCGCAACGC
CGCAGACAGCGCTCAGCAGCGGGCCGCAGAATTCGGCGACAAGGCCAAGA
GCTATGAGAAGAAGTCTGAGGCGTCTGCGCGGGAGGTTAGCGAGAGGGCG
CGCAGGGAGGCAGATGGAATTGCGAGTGAGGCGAGCGACAGGGCCAATGA
GCTGGCGCGCAATAGCAAGAAGGGCGCGGAGGAGGCTCAGCGCAAGGCGG
AGGGCTTTGGCGGGAAGGTGGGGTTGAAGTTGGAGATTTGCGTTGCTGTA
CAAGAGCTTGAGAGGTTGTGTACTTGCTCCACTTCTTCTGCTGCTGTGAG
TTGTCACAAGACCTTCAGCTTCACGTAGATGCCTCACGATCCTTCAACTT
TTCTTCAAAGTACATCCATCTCGCACACTTGGTTGTAGGCACCATGACTG
CGAAGCACACACCTCTGCAATCACTCACCAAGTGGTGTGTTTATTGCTTG
AGGTTGAAGGTGCTTGTTGAGGGTAGTTCTTGAAGGCCAGAGTTTACTCT
GGTTTGTGGACATATGCGGCTTGATGCTGGAGGGTCGCCAGTGACTTGTG
CAATGACTCACTCACTTTGACTCACTCACCCTTGATTCTGGCAGCCACCC
AGACCTCGCACCCAAAACCCATCCCCCACGCATACATGCACATACATACG
TACATACACACAAACATGCGCATCGTAGCAAGTGTATTTATGCTGTGTGT
GACGCCTCGTGCCAAGTATCACCTTGCAGCTACGTGAATTATTTACTCTC
TTCCATACCGCCAAGTCGTACTCTCTTGGCCCTAACCTCAGTGCTCAACT
CTGACCCCCACTACAGGTCAAGCATGCCGCGGTGGACATCAAAGACGCCG
TTGGCGATGGCATCAACAATGTCAAGGATGCCGTCAAGGACGTCTTCAGG
GACTGAGCGGCAGTTACAGCGCGTGTAACAGCTCATGTAGCTGACATGCG
GCCGCATCCTGCACACCGCATGCCGTCAAGGACATCTTCAGGGACTGAGC
GGCAGTTACAGCGCGTGTAACAGCTCATGTAGCTGACATGCGGCCGCATC
CTGCACACCGCGCAGTGCGTAGAGCCGCTGTGTAGATTAGCAGTGCAAGT
AGAGGATGGATGGGAACATTGGTGATACCCCAATACCCTGGGTGGTTGGT
GTTTGAAGTGTGAGAGGGTACACCCTGTAGACATCGC

Coding sequence (CDS) from alignment at Contig_112:306930..310716-

>mRNA_15527 ID=mRNA_15527|Name=jgi.p|Trimin1|352218|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=795bp|location=Sequence derived from alignment at Contig_112:306930..310716- (Tribonema minus UTEX_B_3156 )
ATGGTCTACACAAGGACTCTCGCCACCGTCGCCGCCGCCCTCGCGCTGAT
CAGCGCTTCGTCGGGCTTCGTGATCGCTGGCAGCAGGGCAGGCCTCACCA
CCAGCAGGCCTGCGTCGACACTGCGCATGAGCAGCGATGTGGAGAGGGAT
GTGAAGAGGACAGCCCGTGACGCCTCCGAGACGGCCAGCGACCTGGGCAA
TCAGGCGGAGGGCGCGGCGCGTGATGCTGGTGACTCTGCCAACAGGACCT
TCAGCAAGGCCGGCAGATACTTTGACAATGTCGTGACGGATCTTACCGAC
AGGGCACAGCACGCCAAGGAGAATGTCCAGGATGCCGTCAACCATGGCAC
CAATGATGCCCGCGACTATGCGCGCAAGGCCAAGGCGTCCGCCGAAGACA
TCGCGCACCGCGCCGAAGACCAGTACAACAACATCACCGGCGAGGCGAAG
GACCGCATCAATGATCTCAGCCGCAGCACGCGCAACGCCGCAGACAGCGC
TCAGCAGCGGGCCGCAGAATTCGGCGACAAGGCCAAGAGCTATGAGAAGA
AGTCTGAGGCGTCTGCGCGGGAGGTTAGCGAGAGGGCGCGCAGGGAGGCA
GATGGAATTGCGAGTGAGGCGAGCGACAGGGCCAATGAGCTGGCGCGCAA
TAGCAAGAAGGGCGCGGAGGAGGCTCAGCGCAAGGCGGAGGGCTTTGGCG
GGAAGGTCAAGCATGCCGCGGTGGACATCAAAGACGCCGTTGGCGATGGC
ATCAACAATGTCAAGGATGCCGTCAAGGACGTCTTCAGGGACTGA