mRNA_15513 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352213
Unique NamemRNA_15513
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352213 vs. uniprot
Match: A0A835ZI17_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI17_9STRA)

HSP 1 Score: 204 bits (520), Expect = 2.960e-66
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 
Query:    1 MEANRLVKPRGHQTGENVYNFMSREAELREARRAVEENNRIMAVSKWAQSSEAKVQRAKLLREAKSRAAELRDLSRELKARRTARLRDLYDRETLEVQAELHSRGLAFATHNV 339
            MEANRLVKPRGHQTGENVYNFMSREAELREARRAVEENNRIMAVSKWAQSSEAKVQRAKLLREAKSRAAELRDLSRELKARRTARLRDLYDRETLEVQAELHSRGLAFATHNV
Sbjct:    1 MEANRLVKPRGHQTGENVYNFMSREAELREARRAVEENNRIMAVSKWAQSSEAKVQRAKLLREAKSRAAELRDLSRELKARRTARLRDLYDRETLEVQAELHSRGLAFATHNV 113
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352213 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZI17_9STRA2.960e-66100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_112contigContig_112:153120..155325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352213|estExt_Genemark1.C_Ctg_1120021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF4558
Ec32 orthologEc-17_004120.1
TranscriptId352535
TrackFilteredModels1
ProteinId352213
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352213gene_15513Tribonema minus UTEX_B_3156 geneContig_112 153120..155325 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15513_3exon_15513_3Tribonema minus UTEX_B_3156 exonContig_112 153120..153269 -
exon_15513_2exon_15513_2Tribonema minus UTEX_B_3156 exonContig_112 154772..154917 -
exon_15513_1exon_15513_1Tribonema minus UTEX_B_3156 exonContig_112 155245..155325 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15513UTR3_15513Tribonema minus UTEX_B_3156 three_prime_UTRContig_112 153120..153154 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15513CDS_15513Tribonema minus UTEX_B_3156 CDSContig_112 155245..155325 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352213Trimin1|352213|estExt_Genemark1.C_Ctg_1120021Tribonema minus UTEX_B_3156 polypeptideContig_112 153155..155325 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15513 ID=mRNA_15513|Name=jgi.p|Trimin1|352213|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=377bp|location=Sequence derived from alignment at Contig_112:153120..155325- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCGAACAGGCTGGTGAAGCCACGGGGGCACCAAACTGGCGAGAA
TGTTTACAACTTCATGAGCAGGGAAGCTGAGTTGAGGGAGGCACGGCGAG
CGGTGGAGGAGAACAACAGGATCATGGCAGTTTCAAAATGGGCGCAGTCC
AGTGAGGCCAAGGTGCAGCGCGCAAAGCTCCTGAGAGAGGCCAAATCGCG
CGCGGCAGAGCTCAGGGACCTGTCGAGGGAGCTGAAAGCGCGGCGCACAG
CGCGGCTTCGGGACCTGTACGACCGCGAGACGCTGGAAGTTCAGGCGGAA
CTCCATTCAAGAGGACTCGCATTTGCCACCCACAACGTGTAAAGGGTAAC
TAAACTAAATATGAAACTGAAACATTG
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protein sequence of jgi.p|Trimin1|352213

>Trimin1|352213|estExt_Genemark1.C_Ctg_1120021 ID=Trimin1|352213|estExt_Genemark1.C_Ctg_1120021|Name=jgi.p|Trimin1|352213|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=114bp
MEANRLVKPRGHQTGENVYNFMSREAELREARRAVEENNRIMAVSKWAQS
SEAKVQRAKLLREAKSRAAELRDLSRELKARRTARLRDLYDRETLEVQAE
LHSRGLAFATHNV*
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mRNA from alignment at Contig_112:153120..155325-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15513 ID=mRNA_15513|Name=jgi.p|Trimin1|352213|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2206bp|location=Sequence derived from alignment at Contig_112:153120..155325- (Tribonema minus UTEX_B_3156 )
ATGGAGGCGAACAGGCTGGTGAAGCCACGGGGGCACCAAACTGGCGAGAA
TGTTTACAACTTCATGAGCAGGGAAGCTGAGGTGAGTGGTTCAGTGAATC
ACAGATCTGGATGCTGGCGTGTTGCTGTCTTGCAGCACACGCTGTGAACA
GCTGACAGTTATTTGCTGTGCCACCTTGTGCGTCAGCAGCGAATTTGCAG
GATGGCTTATCATCTGCCAAACTCTTTTGTTCAAGTGTGCCATTCTTGAA
GTATCAACCCATGTGTCCTCTGTCAGTCGTTGTTCATCATCTTCAGAAGT
TCAAGTTACATCAGATGTAAGCACATAGCTGAGCACGCGACCCACTGAGC
AGGCCCTCTACTCTTCTGACGCCTGCTTGCTGGCGTGCATGCTCCCATTA
AAATGCAGTTGAGGGAGGCACGGCGAGCGGTGGAGGAGAACAACAGGATC
ATGGCAGTTTCAAAATGGGCGCAGTCCAGTGAGGCCAAGGTGCAGCGCGC
AAAGCTCCTGAGAGAGGCCAAATCGCGCGCGGCAGAGCTCAGGGACCTGT
CGAGGTACGTACTTCAAGTAGACGTTTCAGTGAATCACCTGACTGAGAGA
GGCCAAGTCTCGCGCGGCAGAACTACTGGACCTGTTCAAGTACGTACTTC
AAGTAGAAGTTTCAGTGACTCACCTGACTGAGAGAGGCCGAATCGCGCGC
GGCAGAGCTCAGAGACATGTCCAAGTATGTACTTCAAGTAGAAGTATCAG
CACATCACCTTGCTCAGTGAAACAACTTGAGCCAATCAGCAAGAAGGGTC
ACACGGGCGGTGTCAAGAAAGAGCGTTGAGCAGCATGTACTTCAAGAAGC
AAGTATGAGTGAATGGCCTGACTCAGTGCACCAGCTCGAGGCAATTACGT
TGGAAGTGTCTACAGCAACTTGGCAACTTGAAGACTGGTCACACTTGCGG
CCTTGAAGAGGGCCGAGGTGCGTGTGACAGAGCACGGTTTGGCAGGTGTT
GTCAAACCGCATGATGCTGACGTGCTGTGTGCTTGGGTGGAGGTACCACG
TGATGCAGTGCCCTGAGCTCTGCACTGCAGAGTCTGGACGCTTCACTGCG
CTGCCCGCTGCGCTCTAAAAAAACTGTGAGGGCTCATGCTGCCTGGGCTC
GAGCCTCGTCAAGAAGTACGCGCAGTGCTGTCGGTCAAAGCTGAAGTCTG
AGATGTAATGTTGAAGTAGACGAGAAGTAACCCAACGAAGCACCTTGGCT
CCATTGGTGTTGTTGGTTGGCCAGATGCTTGTGCGTAATGCAGGGCGCTG
AAACCACCGCCGAGGTGCCACTGAACAGAACACTTCCAAAGTAGTGCATA
ATCAGCATTTGGGTAGCCTTGAAACAGTGTACGCGGCGAATATACTAGTA
TTCTCTCTCATGAGCAGTCCCTGCTATTGAAATGCAACGCTGCTTTTACT
CACACGGTTGAACTGAAGCCCACTCGTCACCTCGGTTAATGCACTGCCGT
TGAGCGACTGACCGTCTGCGCGCGGTGCAGGGAGCTGCACACACTGTCAT
TTGCGCCCCCGAGTCGGCTCAGCTCGTTGATCCCATTTGCGCCCCCGAGT
CGGCTCACCTCCTTGATCCCTGGCGCTTGGCCATCTTGTTTGAAACGCTT
GCGCCTGGTGCAGGGAGCCGCAAGCGTGGCGCACAGCGCGACCGCAGCAA
ATGCAACCAAACTAATGATTGCACACTTGACACCTCGGCTCATTGGTCGT
CGTTGTTTGACCAACTGCCTGCGCGCGCTGCAGGGAGCTGAAAGCGCGGC
GCACAGCGCATCTAGCCAAAGTATATTTGAGCAAAACCGACTACCGTATC
CAAATCCTCTTGCGCAACTCGCTTGTGGCATGCCTTGAATGGAAGAGTAA
GCAAACTCGAAGCAGTCTGTATTTTTGCCATACGTCGTTTCTTAGGCATA
GGGTTGAGGTTTGAGTCACATGCCTTCGACTGGAGAATAAGCCAACTCGA
TGCCTGGCTGATGGACCACGTGCTGTTGCTTGGCCCATTGCTTGCGTGCG
GTGCAGGGAGCTGAAAGCGCGGCGCACAGCGCGGCTTCGGGACCTGTACG
ACCGCGAGACGCTGGAAGTTCAGGCGGAACTCCATTCAAGAGGACTCGCA
TTTGCCACCCACAACGTGTAAAGGGTAACTAAACTAAATATGAAACTGAA
ACATTG
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Coding sequence (CDS) from alignment at Contig_112:153120..155325-

>mRNA_15513 ID=mRNA_15513|Name=jgi.p|Trimin1|352213|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=342bp|location=Sequence derived from alignment at Contig_112:153120..155325- (Tribonema minus UTEX_B_3156 )
ATGGAGGCGAACAGGCTGGTGAAGCCACGGGGGCACCAAACTGGCGAGAA
TGTTTACAACTTCATGAGCAGGGAAGCTGAGTTGAGGGAGGCACGGCGAG
CGGTGGAGGAGAACAACAGGATCATGGCAGTTTCAAAATGGGCGCAGTCC
AGTGAGGCCAAGGTGCAGCGCGCAAAGCTCCTGAGAGAGGCCAAATCGCG
CGCGGCAGAGCTCAGGGACCTGTCGAGGGAGCTGAAAGCGCGGCGCACAG
CGCGGCTTCGGGACCTGTACGACCGCGAGACGCTGGAAGTTCAGGCGGAA
CTCCATTCAAGAGGACTCGCATTTGCCACCCACAACGTGTAA
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