mRNA_15502 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|352205
Unique Name	mRNA_15502
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|352205 vs. uniprot
Match: A0A836CNA5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNA5_9STRA)

HSP 1 Score: 170 bits (430), Expect = 8.380e-52
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1

Query:    1 MQRLAYLELQVNVVELVPLLPNLSRQLKRKVVGGALLLVRRVRKADSEAGCEVGALLVANLXXXXXXXXXXXXXXXTVAGVRLGFAANEQACRDGACAVHSQEVTST 321
            MQRLAYLELQVNVVELVPLLPNLSRQLKRKVVGGALLLVRRVRKADSEAGCEVGALLVANLXXXXXXXXXXXXXXXTVAGVRLGFAANEQACRDGACAVHSQEVTST
Sbjct:    1 MQRLAYLELQVNVVELVPLLPNLSRQLKRKVVGGALLLVRRVRKADSEAGCEVGALLVANLXXXXXXXXXXXXXXXTVAGVRLGFAANEQACRDGACAVHSQEVTST 107

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352205 vs. uniprot

BLAST of jgi.p|Trimin1|352205 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CNA5_9STRA	8.380e-52	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_112	contig	Contig_112:26810..29771 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|352205\|estExt_Genemark1.C_Ctg_1120005
Hectar predicted targeting category	signal anchor
TranscriptId	352527
Track	FilteredModels1
ProteinId	352205

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352205	gene_15502	Tribonema minus UTEX_B_3156	gene	Contig_112 26810..29771 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352205	Trimin1\|352205\|estExt_Genemark1.C_Ctg_1120005	Tribonema minus UTEX_B_3156	polypeptide	Contig_112 27008..29771 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_15502_4	exon_15502_4	Tribonema minus UTEX_B_3156	exon	Contig_112 26810..27090 -
exon_15502_3	exon_15502_3	Tribonema minus UTEX_B_3156	exon	Contig_112 27298..27355 -
exon_15502_2	exon_15502_2	Tribonema minus UTEX_B_3156	exon	Contig_112 28371..28469 -
exon_15502_1	exon_15502_1	Tribonema minus UTEX_B_3156	exon	Contig_112 29688..29771 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_15502	UTR3_15502	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_112 26810..27007 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_15502	CDS_15502	Tribonema minus UTEX_B_3156	CDS	Contig_112 29688..29771 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_112:26810..29771-
coding sequence from alignment at Contig_112:26810..29771-

spliced messenger RNA

>mRNA_15502 ID=mRNA_15502|Name=jgi.p|Trimin1|352205|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=522bp|location=Sequence derived from alignment at Contig_112:26810..29771- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGACTGGCGTACCTGGAGCTCCAGGTAAACGTGGTGGAACTGGT
GCCGCTGCTGCCGAACCTGAGCCGCCAGCTGAAGCGAAAAGTCGTGGGGG
GAGCGCTGCTGCTGGTGAGGAGAGTGCGAAAAGCGGACTCAGAGGCGGGC
TGCGAGGTGGGCGCGTTGCTCGTGGCAAACCTGCTGCTGCTGCTGCTGCT
GCTGCTGCCCGCCGCCGCCGCCGCCACCACCGTTGCTGGTGTGCGGCTGG
GCTTCGCAGCCAATGAGCAGGCGTGCCGCGACGGAGCATGCGCAGTGCAC
TCGCAGGAGGTTACCAGCACTTGAATCAGCCAGCATCAGCTGATCACAAG
CCCCTCTGTTCAAGTTGCTTGTGTGCGCGCATCAAGTGCTTAAGGTCTTG
TGCCAGCTAGAACTTGCTTGATGGCTCCTTACTTGGAACGGACAGTCTCT
TTACATTAGAGTGAAGCCGCTTTTTTGTTGGCACACACACCACATTACTG
ATAATGAACAAGTTGAATCCTA

protein sequence of jgi.p|Trimin1|352205

>Trimin1|352205|estExt_Genemark1.C_Ctg_1120005 ID=Trimin1|352205|estExt_Genemark1.C_Ctg_1120005|Name=jgi.p|Trimin1|352205|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=108bp
MQRLAYLELQVNVVELVPLLPNLSRQLKRKVVGGALLLVRRVRKADSEAG
CEVGALLVANLLLLLLLLLPAAAAATTVAGVRLGFAANEQACRDGACAVH
SQEVTST*

mRNA from alignment at Contig_112:26810..29771-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_15502 ID=mRNA_15502|Name=jgi.p|Trimin1|352205|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2962bp|location=Sequence derived from alignment at Contig_112:26810..29771- (Tribonema minus UTEX_B_3156 )
ATGCAGCGACTGGCGTACCTGGAGCTCCAGGTAAACGTGGTGGAACTGGT
GCCGCTGCTGCCGAACCTGAGCCGCCAGCTGAAGGTAGAAAGCTCCGCGG
ATAGCTGCAAGTTCACTCTCTGACCACCATATCCGATGATAATCGAGCTC
TTCTTTGGTGGGCGTCATGATCACACACACTCACGGTCTCTTTGAAGGAA
ACATGCTTGCGAGCATCGCAGCGGCAGCTGCTGGCTTTGGGCGCGTCCGA
CTCGTTGCTGCTGCTGCGCTTGCATACCGATCTCCCGTTGTTGAATGACT
GGATGACCCTAAGCCTGAACCTGGCACTGAAGGATACGCTGCTGCTGCCG
CCGCTGCTGCGTTGGTGTATGTTGGTGCGTGGCATGCCCGTACACCACCT
GTGCTCAGGGTAGGTGCACGTAGTACCTGTACAACCTGTGTGTCAAACTG
ATGTTGAAAAGCAATTGATGAGCCGCAGTCCTCAATCGACATGTACCGTC
CCAGAGAAGCGTTCTGTACCGTCCCATAGAGCGATGTTCATGTTCTGTCT
CAATTGAAGAAGCCTTCGAGCAGCTTACCGACATGAGCCGGAGCACGACT
AACACACACTCTGCAGGTGGGTGTGTTGACAGCCCTGCCGCGGGACGGAC
GGACTTCAGATTCAAAACTTGTGTTTTTTTTAAGCGTGTACAGCGTGTAC
ACTGCTCAAAATACCGGCCTGACAATGTGTAAGATGCACACATGCTCAAG
ACACCCGGCCTGTTGCAACACACACACCCTGACGCGTGCTTGCCAGGGCA
AATGGCAACCAGCCGCAACTCCCCCTATGTGCCCGTTTGTGCCGAATTTC
AAAGTTCAACCGACCGTTTCACACAGGGCCAGGATCAGACAAAGACACCC
AGGCGAGTATTTTTTGTGACAGGGCAGCTCCCGACAAGGATGAGCGATGT
GATTGGGTGATTTGAGCTCTCCTTAGTGTGCCCTACGACAAGGCCATCCA
ATCAGATCGCTTGCTCTGCGACAAGCCTCCTGAGTCTTCCAAGTCCTGGC
AAAAAGCTGCTCGCAGCACCACCACCAGGCGATGTACAAGCGCCTGGCAC
GTGTTGTGCGGTTGGCATCGATGTTAGTGAGTATTGCATCACTGCTGCAG
GTCTTGGGCGCTCTTGGCATGGAGTGAACCATACAAAAAGCTGCTGCGCC
GCCTTTGAGGATTACACTGGACTTTGGCGGCTTGCTGGCGCAGCTGTGCG
TGTGCAGTGATCGCAGGACATGTTCGCTGCTGGTGCGGGTGCTGGGGATT
AGCGAAAAGTCGTGGGGGGAGCGCTGCTGCTGGTGAGGAGAGTGCGAAAA
GCGGACTCAGAGGCGGGCTGCGAGGTGGGCGCGTTGCTCGTGGCAAACCT
GGTCAGACCGCACCAATTCTCAAGGTAATCAGCAGGATTATGTAAGAGCT
GGTGTTGAGAAAGAGTGCAAAAACTGCAGCAAAAGCACTTTGCTGATGCC
GAGCGGGCATATCCAACATGGCACCGATCGGCGTAGACTAGTCTACAGGC
TTTGTACTAAATGAGGCTTATGCCATTGCAGCCTGTCATGCAGGCCGCTC
CGTTGTTGCACGAGCAGCACGACGTTAAATCATAGTTTTATAATGTGCTT
GCAGTATGCACTGAAAGTAACGTTAAGAAGCCACTTGTTGAGCTCAGATG
TCGTGTTGCTCTGCCCCTTGCAAAGCATGTCAGCATGCATGTAGACATGA
TCTCTCAACGATGTGATACTCTTGCTGAGGGAGCTGCAAGAACCGGTAGC
TTTTTGCAGGTCTGCATCATCTGCTGTTGATAAAGAGGTGCTTGCGGCCC
TGGGGCTACAGCCAAAACTACAGTGTCTTAACCGACCGCGTGTGACATGC
GAGAAGCAAGTGCAGACCACTACGTACACAGCGCAGTCACATTTATGTGC
TGGTTGGAGGATGAACTGTACTGAATTCATGAGTTCATGACATAATGCCT
GGGCGCTTGTCAAATGCCACTGCCAGGGCACAATCATCAATTTGCAGCGT
ACAAGTGCAGCCTGGTATGCCACCTTTGTCATGCGATGTACTGCAAAATA
TCGTGTGCAGGTGCAAGCACTTGTTGTTCCACTCAGTTGTGCTTCATCGA
CTGCATCAGCCTGCCATTGTACAGCGTGCTACCAGCGTGATCACGATGTG
TGGCGATCAGTCACCATGGCCAGGCTTTAGCGTAAATTGAAGATGAGCAA
TGCGCAGATTGCCCTCAACTAGACACAAGCTTCAATACCTCCAAGTAACA
TGGAAAAGGTGTACATTCACAAGTACATGCGCGCATTAATGCTCACTCTG
AACACAGGACGACTCAAGCAGCGGTGATGTCTTGTTGATGCTGCTGCGCC
GCATGTGCTGTGCAAGCTGCTGCTGCTGCTGCTGCTGCTGCCCGCCGCCG
CCGCCGCCACCACCGTTGCTGGTGGTGCTGGCGGTGGTCCCTTATCGCAG
GATGTGCATGAACTACGATCAGCATTGCTGTTCAGGGTGTTGCTGATATG
AGCGCGCGCCGCAGCAGCGGAGCACACTAAATTTCCATCGCGGTGCGTTG
ATGGTCAGCTGATCAGCGCAAAAACCGGAAGCGTGGCTTGTGCGCTCAGC
AGCGGATGTTTTGGCACGCCTGCTGTCACAGTGCGGCTGGGCTTCGCAGC
CAATGAGCAGGCGTGCCGCGACGGAGCATGCGCAGTGCACTCGCAGGAGG
TTACCAGCACTTGAATCAGCCAGCATCAGCTGATCACAAGCCCCTCTGTT
CAAGTTGCTTGTGTGCGCGCATCAAGTGCTTAAGGTCTTGTGCCAGCTAG
AACTTGCTTGATGGCTCCTTACTTGGAACGGACAGTCTCTTTACATTAGA
GTGAAGCCGCTTTTTTGTTGGCACACACACCACATTACTGATAATGAACA
AGTTGAATCCTA

Coding sequence (CDS) from alignment at Contig_112:26810..29771-

>mRNA_15502 ID=mRNA_15502|Name=jgi.p|Trimin1|352205|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=324bp|location=Sequence derived from alignment at Contig_112:26810..29771- (Tribonema minus UTEX_B_3156 )
ATGCAGCGACTGGCGTACCTGGAGCTCCAGGTAAACGTGGTGGAACTGGT
GCCGCTGCTGCCGAACCTGAGCCGCCAGCTGAAGCGAAAAGTCGTGGGGG
GAGCGCTGCTGCTGGTGAGGAGAGTGCGAAAAGCGGACTCAGAGGCGGGC
TGCGAGGTGGGCGCGTTGCTCGTGGCAAACCTGCTGCTGCTGCTGCTGCT
GCTGCTGCCCGCCGCCGCCGCCGCCACCACCGTTGCTGGTGTGCGGCTGG
GCTTCGCAGCCAATGAGCAGGCGTGCCGCGACGGAGCATGCGCAGTGCAC
TCGCAGGAGGTTACCAGCACTTGA