mRNA_15502 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352205
Unique NamemRNA_15502
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352205 vs. uniprot
Match: A0A836CNA5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNA5_9STRA)

HSP 1 Score: 170 bits (430), Expect = 8.380e-52
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 
Query:    1 MQRLAYLELQVNVVELVPLLPNLSRQLKRKVVGGALLLVRRVRKADSEAGCEVGALLVANLXXXXXXXXXXXXXXXTVAGVRLGFAANEQACRDGACAVHSQEVTST 321
            MQRLAYLELQVNVVELVPLLPNLSRQLKRKVVGGALLLVRRVRKADSEAGCEVGALLVANLXXXXXXXXXXXXXXXTVAGVRLGFAANEQACRDGACAVHSQEVTST
Sbjct:    1 MQRLAYLELQVNVVELVPLLPNLSRQLKRKVVGGALLLVRRVRKADSEAGCEVGALLVANLXXXXXXXXXXXXXXXTVAGVRLGFAANEQACRDGACAVHSQEVTST 107
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352205 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CNA5_9STRA8.380e-52100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_112contigContig_112:26810..29771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352205|estExt_Genemark1.C_Ctg_1120005
Hectar predicted targeting categorysignal anchor
TranscriptId352527
TrackFilteredModels1
ProteinId352205
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352205gene_15502Tribonema minus UTEX_B_3156 geneContig_112 26810..29771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352205Trimin1|352205|estExt_Genemark1.C_Ctg_1120005Tribonema minus UTEX_B_3156 polypeptideContig_112 27008..29771 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15502_4exon_15502_4Tribonema minus UTEX_B_3156 exonContig_112 26810..27090 -
exon_15502_3exon_15502_3Tribonema minus UTEX_B_3156 exonContig_112 27298..27355 -
exon_15502_2exon_15502_2Tribonema minus UTEX_B_3156 exonContig_112 28371..28469 -
exon_15502_1exon_15502_1Tribonema minus UTEX_B_3156 exonContig_112 29688..29771 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15502UTR3_15502Tribonema minus UTEX_B_3156 three_prime_UTRContig_112 26810..27007 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15502CDS_15502Tribonema minus UTEX_B_3156 CDSContig_112 29688..29771 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15502 ID=mRNA_15502|Name=jgi.p|Trimin1|352205|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=522bp|location=Sequence derived from alignment at Contig_112:26810..29771- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGACTGGCGTACCTGGAGCTCCAGGTAAACGTGGTGGAACTGGT
GCCGCTGCTGCCGAACCTGAGCCGCCAGCTGAAGCGAAAAGTCGTGGGGG
GAGCGCTGCTGCTGGTGAGGAGAGTGCGAAAAGCGGACTCAGAGGCGGGC
TGCGAGGTGGGCGCGTTGCTCGTGGCAAACCTGCTGCTGCTGCTGCTGCT
GCTGCTGCCCGCCGCCGCCGCCGCCACCACCGTTGCTGGTGTGCGGCTGG
GCTTCGCAGCCAATGAGCAGGCGTGCCGCGACGGAGCATGCGCAGTGCAC
TCGCAGGAGGTTACCAGCACTTGAATCAGCCAGCATCAGCTGATCACAAG
CCCCTCTGTTCAAGTTGCTTGTGTGCGCGCATCAAGTGCTTAAGGTCTTG
TGCCAGCTAGAACTTGCTTGATGGCTCCTTACTTGGAACGGACAGTCTCT
TTACATTAGAGTGAAGCCGCTTTTTTGTTGGCACACACACCACATTACTG
ATAATGAACAAGTTGAATCCTA
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protein sequence of jgi.p|Trimin1|352205

>Trimin1|352205|estExt_Genemark1.C_Ctg_1120005 ID=Trimin1|352205|estExt_Genemark1.C_Ctg_1120005|Name=jgi.p|Trimin1|352205|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=108bp
MQRLAYLELQVNVVELVPLLPNLSRQLKRKVVGGALLLVRRVRKADSEAG
CEVGALLVANLLLLLLLLLPAAAAATTVAGVRLGFAANEQACRDGACAVH
SQEVTST*
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mRNA from alignment at Contig_112:26810..29771-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15502 ID=mRNA_15502|Name=jgi.p|Trimin1|352205|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2962bp|location=Sequence derived from alignment at Contig_112:26810..29771- (Tribonema minus UTEX_B_3156 )
ATGCAGCGACTGGCGTACCTGGAGCTCCAGGTAAACGTGGTGGAACTGGT
GCCGCTGCTGCCGAACCTGAGCCGCCAGCTGAAGGTAGAAAGCTCCGCGG
ATAGCTGCAAGTTCACTCTCTGACCACCATATCCGATGATAATCGAGCTC
TTCTTTGGTGGGCGTCATGATCACACACACTCACGGTCTCTTTGAAGGAA
ACATGCTTGCGAGCATCGCAGCGGCAGCTGCTGGCTTTGGGCGCGTCCGA
CTCGTTGCTGCTGCTGCGCTTGCATACCGATCTCCCGTTGTTGAATGACT
GGATGACCCTAAGCCTGAACCTGGCACTGAAGGATACGCTGCTGCTGCCG
CCGCTGCTGCGTTGGTGTATGTTGGTGCGTGGCATGCCCGTACACCACCT
GTGCTCAGGGTAGGTGCACGTAGTACCTGTACAACCTGTGTGTCAAACTG
ATGTTGAAAAGCAATTGATGAGCCGCAGTCCTCAATCGACATGTACCGTC
CCAGAGAAGCGTTCTGTACCGTCCCATAGAGCGATGTTCATGTTCTGTCT
CAATTGAAGAAGCCTTCGAGCAGCTTACCGACATGAGCCGGAGCACGACT
AACACACACTCTGCAGGTGGGTGTGTTGACAGCCCTGCCGCGGGACGGAC
GGACTTCAGATTCAAAACTTGTGTTTTTTTTAAGCGTGTACAGCGTGTAC
ACTGCTCAAAATACCGGCCTGACAATGTGTAAGATGCACACATGCTCAAG
ACACCCGGCCTGTTGCAACACACACACCCTGACGCGTGCTTGCCAGGGCA
AATGGCAACCAGCCGCAACTCCCCCTATGTGCCCGTTTGTGCCGAATTTC
AAAGTTCAACCGACCGTTTCACACAGGGCCAGGATCAGACAAAGACACCC
AGGCGAGTATTTTTTGTGACAGGGCAGCTCCCGACAAGGATGAGCGATGT
GATTGGGTGATTTGAGCTCTCCTTAGTGTGCCCTACGACAAGGCCATCCA
ATCAGATCGCTTGCTCTGCGACAAGCCTCCTGAGTCTTCCAAGTCCTGGC
AAAAAGCTGCTCGCAGCACCACCACCAGGCGATGTACAAGCGCCTGGCAC
GTGTTGTGCGGTTGGCATCGATGTTAGTGAGTATTGCATCACTGCTGCAG
GTCTTGGGCGCTCTTGGCATGGAGTGAACCATACAAAAAGCTGCTGCGCC
GCCTTTGAGGATTACACTGGACTTTGGCGGCTTGCTGGCGCAGCTGTGCG
TGTGCAGTGATCGCAGGACATGTTCGCTGCTGGTGCGGGTGCTGGGGATT
AGCGAAAAGTCGTGGGGGGAGCGCTGCTGCTGGTGAGGAGAGTGCGAAAA
GCGGACTCAGAGGCGGGCTGCGAGGTGGGCGCGTTGCTCGTGGCAAACCT
GGTCAGACCGCACCAATTCTCAAGGTAATCAGCAGGATTATGTAAGAGCT
GGTGTTGAGAAAGAGTGCAAAAACTGCAGCAAAAGCACTTTGCTGATGCC
GAGCGGGCATATCCAACATGGCACCGATCGGCGTAGACTAGTCTACAGGC
TTTGTACTAAATGAGGCTTATGCCATTGCAGCCTGTCATGCAGGCCGCTC
CGTTGTTGCACGAGCAGCACGACGTTAAATCATAGTTTTATAATGTGCTT
GCAGTATGCACTGAAAGTAACGTTAAGAAGCCACTTGTTGAGCTCAGATG
TCGTGTTGCTCTGCCCCTTGCAAAGCATGTCAGCATGCATGTAGACATGA
TCTCTCAACGATGTGATACTCTTGCTGAGGGAGCTGCAAGAACCGGTAGC
TTTTTGCAGGTCTGCATCATCTGCTGTTGATAAAGAGGTGCTTGCGGCCC
TGGGGCTACAGCCAAAACTACAGTGTCTTAACCGACCGCGTGTGACATGC
GAGAAGCAAGTGCAGACCACTACGTACACAGCGCAGTCACATTTATGTGC
TGGTTGGAGGATGAACTGTACTGAATTCATGAGTTCATGACATAATGCCT
GGGCGCTTGTCAAATGCCACTGCCAGGGCACAATCATCAATTTGCAGCGT
ACAAGTGCAGCCTGGTATGCCACCTTTGTCATGCGATGTACTGCAAAATA
TCGTGTGCAGGTGCAAGCACTTGTTGTTCCACTCAGTTGTGCTTCATCGA
CTGCATCAGCCTGCCATTGTACAGCGTGCTACCAGCGTGATCACGATGTG
TGGCGATCAGTCACCATGGCCAGGCTTTAGCGTAAATTGAAGATGAGCAA
TGCGCAGATTGCCCTCAACTAGACACAAGCTTCAATACCTCCAAGTAACA
TGGAAAAGGTGTACATTCACAAGTACATGCGCGCATTAATGCTCACTCTG
AACACAGGACGACTCAAGCAGCGGTGATGTCTTGTTGATGCTGCTGCGCC
GCATGTGCTGTGCAAGCTGCTGCTGCTGCTGCTGCTGCTGCCCGCCGCCG
CCGCCGCCACCACCGTTGCTGGTGGTGCTGGCGGTGGTCCCTTATCGCAG
GATGTGCATGAACTACGATCAGCATTGCTGTTCAGGGTGTTGCTGATATG
AGCGCGCGCCGCAGCAGCGGAGCACACTAAATTTCCATCGCGGTGCGTTG
ATGGTCAGCTGATCAGCGCAAAAACCGGAAGCGTGGCTTGTGCGCTCAGC
AGCGGATGTTTTGGCACGCCTGCTGTCACAGTGCGGCTGGGCTTCGCAGC
CAATGAGCAGGCGTGCCGCGACGGAGCATGCGCAGTGCACTCGCAGGAGG
TTACCAGCACTTGAATCAGCCAGCATCAGCTGATCACAAGCCCCTCTGTT
CAAGTTGCTTGTGTGCGCGCATCAAGTGCTTAAGGTCTTGTGCCAGCTAG
AACTTGCTTGATGGCTCCTTACTTGGAACGGACAGTCTCTTTACATTAGA
GTGAAGCCGCTTTTTTGTTGGCACACACACCACATTACTGATAATGAACA
AGTTGAATCCTA
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Coding sequence (CDS) from alignment at Contig_112:26810..29771-

>mRNA_15502 ID=mRNA_15502|Name=jgi.p|Trimin1|352205|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=324bp|location=Sequence derived from alignment at Contig_112:26810..29771- (Tribonema minus UTEX_B_3156 )
ATGCAGCGACTGGCGTACCTGGAGCTCCAGGTAAACGTGGTGGAACTGGT
GCCGCTGCTGCCGAACCTGAGCCGCCAGCTGAAGCGAAAAGTCGTGGGGG
GAGCGCTGCTGCTGGTGAGGAGAGTGCGAAAAGCGGACTCAGAGGCGGGC
TGCGAGGTGGGCGCGTTGCTCGTGGCAAACCTGCTGCTGCTGCTGCTGCT
GCTGCTGCCCGCCGCCGCCGCCGCCACCACCGTTGCTGGTGTGCGGCTGG
GCTTCGCAGCCAATGAGCAGGCGTGCCGCGACGGAGCATGCGCAGTGCAC
TCGCAGGAGGTTACCAGCACTTGA
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