mRNA_15501 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352204
Unique NamemRNA_15501
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352204 vs. uniprot
Match: A0A836CNE3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNE3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 7.590e-20
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 2 
Query:    2 WCTPARCAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWREQQCWSSSRGCCAAPANTRSGQGTLGALLHTVAIGN 319
            WCTPARCAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWREQQCWSSSRGCCAAPANTRSGQGTLGALLHTVAIGN
Sbjct:    1 WCTPARCAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWREQQCWSSSRGCCAAPANTRSGQGTLGALLHTVAIGN 106
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352204 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CNE3_9STRA7.590e-20100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_112contigContig_112:21453..22724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352204|estExt_Genemark1.C_Ctg_1120004
Hectar predicted targeting categorysignal peptide
TranscriptId352526
TrackFilteredModels1
ProteinId352204
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352204gene_15501Tribonema minus UTEX_B_3156 geneContig_112 21453..22724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352204Trimin1|352204|estExt_Genemark1.C_Ctg_1120004Tribonema minus UTEX_B_3156 polypeptideContig_112 21454..22479 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15501_1exon_15501_1Tribonema minus UTEX_B_3156 exonContig_112 21453..21558 +
exon_15501_2exon_15501_2Tribonema minus UTEX_B_3156 exonContig_112 21682..21828 +
exon_15501_3exon_15501_3Tribonema minus UTEX_B_3156 exonContig_112 22411..22724 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_15501UTR5_15501Tribonema minus UTEX_B_3156 five_prime_UTRContig_112 21453..21453 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15501CDS_15501Tribonema minus UTEX_B_3156 CDSContig_112 21454..21558 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15501UTR3_15501Tribonema minus UTEX_B_3156 three_prime_UTRContig_112 22480..22724 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15501 ID=mRNA_15501|Name=jgi.p|Trimin1|352204|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=567bp|location=Sequence derived from alignment at Contig_112:21453..22724+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCACGCCTGCCAGGTGTGCTGGGGCGGCAGCAGCAGCAGCAGCAG
CAGCAGCGGCAGCGGCGGCGGCAGCGCGGCGGCGGCGGCGGCAGCGGCGA
CGGCAAGTCAGCGCTGCGACGCCCACACGGCGGCGGCGGCGGCGGCGGCG
GCGGCGGCGGCGGCGACAGCGGCGGCGGCAGAGGCAGCGGCGGCAGTGGT
GGCGGTGGCGGGAGCAGCAGTGCTGGAGCAGCAGCAGGGGCTGCTGCGCT
GCGCCAGCCAACACGCGTAGCGGGCAAGGCACTCTAGGAGCACTGCTGCA
CACCGTTGCCATTGGCAATTGAGTACATCCGTGCTGCAGGCTCAACATCA
ACGGCCGGCTGCATCATTCCATGTTTGACAGCGATGGTACACCTACGGCT
GGGCGCGGCGTCGGTCGCTGTTGTTCAACTTGAAGTTGTGGCGGTGACAC
TTGCTGCCCACTAGCGAATCAAACACTTGCAAAGCCAGGAAGCACTCAGG
CTGCTGCCTGATGCGTCTGTGTGCGTGATCTGCGCGGTAAATACGACAGT
GCATCTTGGGCTCCAGG
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protein sequence of jgi.p|Trimin1|352204

>Trimin1|352204|estExt_Genemark1.C_Ctg_1120004 ID=Trimin1|352204|estExt_Genemark1.C_Ctg_1120004|Name=jgi.p|Trimin1|352204|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp
WCTPARCAGAAAAAAAAAAAAAAAARRRRRQRRRQVSAATPTRRRRRRRR
RRRRRQRRRQRQRRQWWRWREQQCWSSSRGCCAAPANTRSGQGTLGALLH
TVAIGN*
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mRNA from alignment at Contig_112:21453..22724+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15501 ID=mRNA_15501|Name=jgi.p|Trimin1|352204|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1272bp|location=Sequence derived from alignment at Contig_112:21453..22724+ (Tribonema minus UTEX_B_3156 )
ATGGTGCACGCCTGCCAGGTGTGCTGGGGCGGCAGCAGCAGCAGCAGCAG
CAGCAGCGGCAGCGGCGGCGGCAGCGCGGCGGCGGCGGCGGCAGCGGCGA
CGGCAAGTGCTGCTGAGCACTGATGACGCGCTTGCCTGCAGGCGCTGATG
TGTGCTGGCGGCAGCGGCGGCAGCGGCGGCAGCGGCGACGGAAAGGGCTG
CTGAGAACCGAAAATTGCAGGCGCCCGAGGTCAGCGCTGCGACGCCCACA
CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACAGCGGCGGCG
GCAGAGGCAGCGGCGGCAGTGGTGGCGGTGGCGGGAGCAGCAGTGCTGGA
GCAGCAGCAGGGGCTGCTGCGCTGCGGTGATCAACGACAGTCGCTGCTAC
ACTTCATGCAGTGAGCCGCAAGCGGGGGCGGCGGCGGCGGGGGGAGCGGC
AAGCGCGGCGCATGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGTGGTGGG
TGGGGGGGGGATGAGTCAAAGGCATGAGGGAGTCATTGAAGGCGGAGGGT
GTGGTGCCGGCTTCAGGGCAACTGGAAGAACCTAACGCGTTGTAAACCTC
AAGTTGAATTTGAGGTTGACTTTGGGAAGGTTGTGCCGTGCTTTGCGGAG
TTATGCAAGACAGCGGGTAGTTTGGGTGCGTGTTAGCAGGGGGCTCTGCA
GGCATCGTCTGCGGGTTCTGCGCATCACGACCGCGGGTACAACAGGAGTA
CAGCTGGCATGCATCGAGTAAACAGAGTGAACAGGCCATACGGCCAACTT
CATATCGACGCAGGAAAGAGGCTGACTGTGAAGCAGCCCAATATATTCTC
GCATCAGCCGGATATGTCTTGGCACGTGGCACTGTGTAGCTGCGGGCCCT
GTACCTGTGTTATTTTTTCAAGTATCCGAGGAATTCCCGCCTCTCTCTGC
TGGTATAGCCAGCCAACACGCGTAGCGGGCAAGGCACTCTAGGAGCACTG
CTGCACACCGTTGCCATTGGCAATTGAGTACATCCGTGCTGCAGGCTCAA
CATCAACGGCCGGCTGCATCATTCCATGTTTGACAGCGATGGTACACCTA
CGGCTGGGCGCGGCGTCGGTCGCTGTTGTTCAACTTGAAGTTGTGGCGGT
GACACTTGCTGCCCACTAGCGAATCAAACACTTGCAAAGCCAGGAAGCAC
TCAGGCTGCTGCCTGATGCGTCTGTGTGCGTGATCTGCGCGGTAAATACG
ACAGTGCATCTTGGGCTCCAGG
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Coding sequence (CDS) from alignment at Contig_112:21453..22724+

>mRNA_15501 ID=mRNA_15501|Name=jgi.p|Trimin1|352204|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=321bp|location=Sequence derived from alignment at Contig_112:21453..22724+ (Tribonema minus UTEX_B_3156 )
TGGTGCACGCCTGCCAGGTGTGCTGGGGCGGCAGCAGCAGCAGCAGCAGC
AGCAGCGGCAGCGGCGGCGGCAGCGCGGCGGCGGCGGCGGCAGCGGCGAC
GGCAAGTCAGCGCTGCGACGCCCACACGGCGGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCGGCGACAGCGGCGGCGGCAGAGGCAGCGGCGGCAGTGGTG
GCGGTGGCGGGAGCAGCAGTGCTGGAGCAGCAGCAGGGGCTGCTGCGCTG
CGCCAGCCAACACGCGTAGCGGGCAAGGCACTCTAGGAGCACTGCTGCAC
ACCGTTGCCATTGGCAATTGA
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