mRNA_15495 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152077
Unique NamemRNA_15495
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|152077 vs. uniprot
Match: A0A835Z8X2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X2_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.310e-47
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:    1 LEELSALVPLLLDADDLCARAAASFGALGTVLVKCALAYVLLRLGRTAECLRALEPVVPLLSLHPGLVRQSAVWHLVHCAMV 246
            LEELSALVPLLLDADDLCARAAASFGALGTVLVKCALAYVLLRLGRTAECLRALEPVVPLLSLHPGLVRQSAVWHLVHCAMV
Sbjct:    1 LEELSALVPLLLDADDLCARAAASFGALGTVLVKCALAYVLLRLGRTAECLRALEPVVPLLSLHPGLVRQSAVWHLVHCAMV 82
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BLAST of jgi.p|Trimin1|152077 vs. uniprot
Match: D7FNW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW6_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.650e-16
Identity = 42/80 (52.50%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    7 ELSALVPLLLDADDLCARAAASFGALGTVLVKCALAYVLLRLGRTAECLRALEPVVPLLSLHPGLVRQSAVWHLVHCAMV 246
            EL++L+P+L  AD +    ++SFGALG VLVK  LAY+LLRLGR+ + L  LEPVV +L+ +PGL+RQ   WHL  C ++
Sbjct:    3 ELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSRCILL 82
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BLAST of jgi.p|Trimin1|152077 vs. uniprot
Match: A0A6H5K8W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W2_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.000e-16
Identity = 44/80 (55.00%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:    7 ELSALVPLLLDADDLCARAAASFGALGTVLVKCALAYVLLRLGRTAECLRALEPVVPLLSLHPGLVRQSAVWHLVHCAMV 246
            EL++L+P+L  AD +    ++SFGALG VLVK  LAY+LLRLGR+ + L  LEPVV +L+ +PGL+RQ   WHL HC +V
Sbjct:  218 ELNSLLPILTRADGMSQDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSHCILV 297
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BLAST of jgi.p|Trimin1|152077 vs. uniprot
Match: D8LD81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD81_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.980e-16
Identity = 44/80 (55.00%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:    7 ELSALVPLLLDADDLCARAAASFGALGTVLVKCALAYVLLRLGRTAECLRALEPVVPLLSLHPGLVRQSAVWHLVHCAMV 246
            EL++L+P+L  AD +    ++SFGALG VLVK  LAY+LLRLGR+ + L  LEPVV +L+ +PGL+RQ   WHL HC +V
Sbjct:  305 ELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSHCILV 384
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BLAST of jgi.p|Trimin1|152077 vs. uniprot
Match: D8LD86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD86_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 4.820e-15
Identity = 43/80 (53.75%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    7 ELSALVPLLLDADDLCARAAASFGALGTVLVKCALAYVLLRLGRTAECLRALEPVVPLLSLHPGLVRQSAVWHLVHCAMV 246
            EL++L+P+L  AD +    ++SFGALG VLVK  LAY+LLRLGR+ + L  LEPVV +L+ +PGL+RQ   WHL  C +V
Sbjct:  307 ELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSRCILV 386
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152077 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835Z8X2_9STRA1.310e-47100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7FNW6_ECTSI1.650e-1652.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8W2_9PHAE3.000e-1655.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD81_ECTSI3.980e-1655.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LD86_ECTSI4.820e-1553.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_185contigContig_185:258765..259010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152077|gw1.185.41.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_003040.1
TranscriptId152399
TrackFilteredModels1
ProteinId152077
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152077gene_15495Tribonema minus UTEX_B_3156 geneContig_185 258765..259010 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15495_1exon_15495_1Tribonema minus UTEX_B_3156 exonContig_185 258765..259010 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15495CDS_15495Tribonema minus UTEX_B_3156 CDSContig_185 258765..259010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152077Trimin1|152077|gw1.185.41.1Tribonema minus UTEX_B_3156 polypeptideContig_185 258765..259010 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15495 ID=mRNA_15495|Name=jgi.p|Trimin1|152077|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=246bp|location=Sequence derived from alignment at Contig_185:258765..259010+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGGAGGAGCTCTCCGCGCTCGTGCCGCTGCTGCTGGATGCCGACGACCT
GTGCGCGCGCGCCGCCGCGAGCTTCGGCGCGCTCGGCACGGTCCTCGTCA
AGTGCGCGCTCGCGTACGTGCTGCTGCGCCTCGGGCGCACTGCGGAGTGC
CTGCGCGCGCTCGAGCCCGTGGTGCCGCTGCTGAGCCTCCACCCCGGCCT
CGTGCGCCAGTCCGCGGTCTGGCACCTCGTGCACTGCGCCATGGTC
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protein sequence of jgi.p|Trimin1|152077

>Trimin1|152077|gw1.185.41.1 ID=Trimin1|152077|gw1.185.41.1|Name=jgi.p|Trimin1|152077|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=82bp
LEELSALVPLLLDADDLCARAAASFGALGTVLVKCALAYVLLRLGRTAEC
LRALEPVVPLLSLHPGLVRQSAVWHLVHCAMV
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mRNA from alignment at Contig_185:258765..259010+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15495 ID=mRNA_15495|Name=jgi.p|Trimin1|152077|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=246bp|location=Sequence derived from alignment at Contig_185:258765..259010+ (Tribonema minus UTEX_B_3156 )
CTGGAGGAGCTCTCCGCGCTCGTGCCGCTGCTGCTGGATGCCGACGACCT
GTGCGCGCGCGCCGCCGCGAGCTTCGGCGCGCTCGGCACGGTCCTCGTCA
AGTGCGCGCTCGCGTACGTGCTGCTGCGCCTCGGGCGCACTGCGGAGTGC
CTGCGCGCGCTCGAGCCCGTGGTGCCGCTGCTGAGCCTCCACCCCGGCCT
CGTGCGCCAGTCCGCGGTCTGGCACCTCGTGCACTGCGCCATGGTC
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Coding sequence (CDS) from alignment at Contig_185:258765..259010+

>mRNA_15495 ID=mRNA_15495|Name=jgi.p|Trimin1|152077|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=246bp|location=Sequence derived from alignment at Contig_185:258765..259010+ (Tribonema minus UTEX_B_3156 )
CTGGAGGAGCTCTCCGCGCTCGTGCCGCTGCTGCTGGATGCCGACGACCT
GTGCGCGCGCGCCGCCGCGAGCTTCGGCGCGCTCGGCACGGTCCTCGTCA
AGTGCGCGCTCGCGTACGTGCTGCTGCGCCTCGGGCGCACTGCGGAGTGC
CTGCGCGCGCTCGAGCCCGTGGTGCCGCTGCTGAGCCTCCACCCCGGCCT
CGTGCGCCAGTCCGCGGTCTGGCACCTCGTGCACTGCGCCATGGTC
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