mRNA_15491 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353816
Unique NamemRNA_15491
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|353816 vs. uniprot
Match: A0A835Z3T5_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T5_9STRA)

HSP 1 Score: 353 bits (906), Expect = 4.530e-120
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 3 
Query:    6 MSANSKAPPGPKWDPDRADKQAAAAKARAKAREYLLSSGEGVSTFHDTAKLLGEGVAQRLREATKGGGDNTLEEVQKRAALKRRAEADAAXXXXXXXEAARAKRHKQLEDVTPIAPGWMAVPAAGGKTYYWNTATQQTTWERPEAVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEAGQGAVVTKQAEPELLPGWKHTRHAGTGQEFWVHEATKERRRTPPYKA 827
            MSANSKAPPGPKWDPDRADKQAAAAKARAKAREYLLSSGEGVSTFHDTAKLLGEGVAQRLREATKGGGDNTLEEVQKRAALKRRAEADAAXXXXXXXEAARAKRHKQLEDVTPIAPGWMAVPAAGGKTYYWNTATQQTTWERPEAVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEAGQGAVVTKQAEPELLPGWKHTRHAGTGQEFWVHEATKERRRTPPYKA
Sbjct:    1 MSANSKAPPGPKWDPDRADKQAAAAKARAKAREYLLSSGEGVSTFHDTAKLLGEGVAQRLREATKGGGDNTLEEVQKRAALKRRAEADAAXXXXXXXEAARAKRHKQLEDVTPIAPGWMAVPAAGGKTYYWNTATQQTTWERPEAVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEAGQGAVVTKQAEPELLPGWKHTRHAGTGQEFWVHEATKERRRTPPYKA 274
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BLAST of jgi.p|Trimin1|353816 vs. uniprot
Match: A0A7S3MIN1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MIN1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.850e-6
Identity = 48/135 (35.56%), Postives = 65/135 (48.15%), Query Frame = 3 
Query:   60 DKQAAAAKARAKAREYLLSSGEGVSTFHDTAKLLGEGVAQRLREATKGGGDNTLEEVQKRAALKRRAEADAAXXXXXXXEAARAKRHKQLEDVTPIA---------PGWMAVP-AAGGKTYYWNTATQQTTWERP 434
            +K+A A K R +A  +L   G+ V     T      GV    ++A KGG DNTL+ +     +K++A A           AA+        DV P+A         P W  VP A+ G++YYWNTAT  TTWERP
Sbjct:    6 EKEALALKLRQQALLHLQKEGQAVEKIPLT------GVIAPKKDAGKGG-DNTLDLL-----IKQKATAQIK-------NAAKVTPTVVKSDVPPVAVTSTPSSLPPNWQEVPDASTGRSYYWNTATNATTWERP 121
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353816 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z3T5_9STRA4.530e-120100.00WW domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7S3MIN1_9STRA4.850e-635.56Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_185contigContig_185:238423..240106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353816|estExt_Genemark1.C_Ctg_1850037
DescriptionWW domain
COG categoryS
Max annot lvl4776|Peronosporales
EggNOG OGs2CZKT@1|root,2SAU9@2759|Eukaryota,3QFRJ@4776|Peronosporales
Evalue4.63e-06
Seed ortholog4792.ETI34131
Hectar predicted targeting categoryother localisation
TranscriptId354138
TrackFilteredModels1
ProteinId353816
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353816gene_15491Tribonema minus UTEX_B_3156 geneContig_185 238423..240106 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15491_1exon_15491_1Tribonema minus UTEX_B_3156 exonContig_185 238423..238510 +
exon_15491_2exon_15491_2Tribonema minus UTEX_B_3156 exonContig_185 238999..239137 +
exon_15491_3exon_15491_3Tribonema minus UTEX_B_3156 exonContig_185 239504..240106 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_15491UTR5_15491Tribonema minus UTEX_B_3156 five_prime_UTRContig_185 238423..238427 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15491CDS_15491Tribonema minus UTEX_B_3156 CDSContig_185 238428..238510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353816Trimin1|353816|estExt_Genemark1.C_Ctg_1850037Tribonema minus UTEX_B_3156 polypeptideContig_185 238428..240106 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15491 ID=mRNA_15491|Name=jgi.p|Trimin1|353816|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=830bp|location=Sequence derived from alignment at Contig_185:238423..240106+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGACAATGTCCGCCAATAGCAAGGCGCCGCCCGGACCAAAATGGGATCCT
GACCGCGCAGACAAGCAGGCTGCAGCAGCAAAAGCCAGGGCGAAGGCGCG
GGAGTACCTCCTGAGCTCAGGGGAGGGCGTGAGCACATTCCACGATACGG
CAAAGCTGCTGGGCGAAGGAGTCGCACAGAGGCTGCGTGAGGCGACAAAG
GGGGGAGGGGACAACACACTGGAAGAGGTCCAGAAGCGCGCCGCGCTCAA
GCGCCGCGCGGAGGCGGACGCCGCGGCGCGCCGCGCCGCCGACGAGGAGG
CGGCGCGCGCCAAGCGCCACAAGCAGCTGGAGGACGTCACGCCCATCGCG
CCCGGCTGGATGGCCGTGCCCGCCGCCGGCGGCAAGACGTACTACTGGAA
CACGGCCACGCAGCAGACGACGTGGGAGCGCCCGGAGGCCGTGGACGGGG
GCGGCGGCGGCGGCGGCGGCGCTGCGGACGCGCCGGCGGCAGCGGCAGCG
GCTTCGGCGGCGGCGGCGGGGGGGGCAGCTGCCGCTCCAGCAGCGGCGGC
GGCGCCGGCGGCAACGAAGGCGGCGGCGGCGCAGGCGGCGCAAGGCAGCG
GCGGCGGCGCTGCTGCCGCGCAGCGCGGAGGAGAGGCGGCGCCTGCAGCA
GCAGCGGCGGCGGCGGCGCCGGCGGCATCGGAGGCGGGGCAGGGCGCTGT
GGTAACAAAACAGGCGGAGCCAGAATTATTGCCAGGATGGAAGCACACGC
GACATGCCGGCACCGGGCAGGAGTTCTGGGTGCACGAAGCCACCAAAGAG
CGACGGCGGACGCCGCCGTACAAGGCGTAG
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protein sequence of jgi.p|Trimin1|353816

>Trimin1|353816|estExt_Genemark1.C_Ctg_1850037 ID=Trimin1|353816|estExt_Genemark1.C_Ctg_1850037|Name=jgi.p|Trimin1|353816|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=275bp
MSANSKAPPGPKWDPDRADKQAAAAKARAKAREYLLSSGEGVSTFHDTAK
LLGEGVAQRLREATKGGGDNTLEEVQKRAALKRRAEADAAARRAADEEAA
RAKRHKQLEDVTPIAPGWMAVPAAGGKTYYWNTATQQTTWERPEAVDGGG
GGGGGAADAPAAAAAASAAAAGGAAAAPAAAAAPAATKAAAAQAAQGSGG
GAAAAQRGGEAAPAAAAAAAAPAASEAGQGAVVTKQAEPELLPGWKHTRH
AGTGQEFWVHEATKERRRTPPYKA*
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mRNA from alignment at Contig_185:238423..240106+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15491 ID=mRNA_15491|Name=jgi.p|Trimin1|353816|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1684bp|location=Sequence derived from alignment at Contig_185:238423..240106+ (Tribonema minus UTEX_B_3156 )
TGACAATGTCCGCCAATAGCAAGGCGCCGCCCGGACCAAAATGGGATCCT
GACCGCGCAGACAAGCAGGCTGCAGCAGCAAAAGCCAGGTGAGCAATCAC
CTGGTGATGTTATGATGTTCAATTAGTTGCCGCAGAGACCTCCGTCTCGA
GCGACTTTTCGTGTTGGCACAAACTCATGTGAGATGGTCGTTTTCAGGAC
CACGGTGCTGCAGTAACTTGTCACAACACAAAGCACGCTCAAAAGACCCC
AACACAATACTGAAAGTCGTGGTATTGGCAGCGGCGGCGTCCCAGACAAA
GTGGATATTGAATTGTCCTAAGACAAAGTGGATATATTGTTCAACGCTCA
TGCAGCCTGGCAGTCTCATGCGAGGTCCGATTTCAATCCTGTGCTCTTGC
TACTCGACTGTGGCAATGCCCAGAAAATGCCATGGTATCACATGCTGCAC
AGCTGGCGAGCTGCTTTAGCACCCAATGAATTTCAATCATGCAGCGTGAT
CTGAAGTGCTGTAAGCAAGAACCCAGCTGCAGCAACACGCTCACGTGCTG
CTGCGCCTACGAACGGTGCACCCCAGGGCGAAGGCGCGGGAGTACCTCCT
GAGCTCAGGGGAGGGCGTGAGCACATTCCACGATACGGCAAAGCTGCTGG
GCGAAGGAGTCGCACAGAGGCTGCGTGAGGCGACAAAGGGGGGAGGGGAC
AACACACTGGAAGAGGTGGGTTTGCTCCTCAACACCGCATGGTAAACGCA
TGTTGTCCACCTGGGTATGTTGCGCAGGGGGGGCTGGCTGGCTTCTGTGT
TGCCTGCATTCGCTGCCGCTCCGTGCTGGCTGCGTGCCCCGTGCGTGCGT
AAGCGTGACAGCGATGCGTGAGGGACGTCGCCCGAGCTACGGACTCTCTC
AATGGTGCGCGACGCTGCAGCGCCACATCGCCACGTCGCTACGCCGCCTG
CGTCATCGCAGCGCGCGCCGCCTCTCACGCGCCGCTCGACGCGCACCACC
TGCCGCGCACGCCCACCGCCCCGCCGCCTGCGCGCAACTGACGCGCTACA
CGCACACGCAACACGCCCTCGCGCCCGCCAGGTCCAGAAGCGCGCCGCGC
TCAAGCGCCGCGCGGAGGCGGACGCCGCGGCGCGCCGCGCCGCCGACGAG
GAGGCGGCGCGCGCCAAGCGCCACAAGCAGCTGGAGGACGTCACGCCCAT
CGCGCCCGGCTGGATGGCCGTGCCCGCCGCCGGCGGCAAGACGTACTACT
GGAACACGGCCACGCAGCAGACGACGTGGGAGCGCCCGGAGGCCGTGGAC
GGGGGCGGCGGCGGCGGCGGCGGCGCTGCGGACGCGCCGGCGGCAGCGGC
AGCGGCTTCGGCGGCGGCGGCGGGGGGGGCAGCTGCCGCTCCAGCAGCGG
CGGCGGCGCCGGCGGCAACGAAGGCGGCGGCGGCGCAGGCGGCGCAAGGC
AGCGGCGGCGGCGCTGCTGCCGCGCAGCGCGGAGGAGAGGCGGCGCCTGC
AGCAGCAGCGGCGGCGGCGGCGCCGGCGGCATCGGAGGCGGGGCAGGGCG
CTGTGGTAACAAAACAGGCGGAGCCAGAATTATTGCCAGGATGGAAGCAC
ACGCGACATGCCGGCACCGGGCAGGAGTTCTGGGTGCACGAAGCCACCAA
AGAGCGACGGCGGACGCCGCCGTACAAGGCGTAG
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Coding sequence (CDS) from alignment at Contig_185:238423..240106+

>mRNA_15491 ID=mRNA_15491|Name=jgi.p|Trimin1|353816|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=825bp|location=Sequence derived from alignment at Contig_185:238423..240106+ (Tribonema minus UTEX_B_3156 )
ATGTCCGCCAATAGCAAGGCGCCGCCCGGACCAAAATGGGATCCTGACCG
CGCAGACAAGCAGGCTGCAGCAGCAAAAGCCAGGGCGAAGGCGCGGGAGT
ACCTCCTGAGCTCAGGGGAGGGCGTGAGCACATTCCACGATACGGCAAAG
CTGCTGGGCGAAGGAGTCGCACAGAGGCTGCGTGAGGCGACAAAGGGGGG
AGGGGACAACACACTGGAAGAGGTCCAGAAGCGCGCCGCGCTCAAGCGCC
GCGCGGAGGCGGACGCCGCGGCGCGCCGCGCCGCCGACGAGGAGGCGGCG
CGCGCCAAGCGCCACAAGCAGCTGGAGGACGTCACGCCCATCGCGCCCGG
CTGGATGGCCGTGCCCGCCGCCGGCGGCAAGACGTACTACTGGAACACGG
CCACGCAGCAGACGACGTGGGAGCGCCCGGAGGCCGTGGACGGGGGCGGC
GGCGGCGGCGGCGGCGCTGCGGACGCGCCGGCGGCAGCGGCAGCGGCTTC
GGCGGCGGCGGCGGGGGGGGCAGCTGCCGCTCCAGCAGCGGCGGCGGCGC
CGGCGGCAACGAAGGCGGCGGCGGCGCAGGCGGCGCAAGGCAGCGGCGGC
GGCGCTGCTGCCGCGCAGCGCGGAGGAGAGGCGGCGCCTGCAGCAGCAGC
GGCGGCGGCGGCGCCGGCGGCATCGGAGGCGGGGCAGGGCGCTGTGGTAA
CAAAACAGGCGGAGCCAGAATTATTGCCAGGATGGAAGCACACGCGACAT
GCCGGCACCGGGCAGGAGTTCTGGGTGCACGAAGCCACCAAAGAGCGACG
GCGGACGCCGCCGTACAAGGCGTAG
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