mRNA_15486 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|179121
Unique Name	mRNA_15486
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|179121 vs. uniprot
Match: A0A836CIB6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIB6_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.910e-53
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1

Query:    1 MREAMGALARDLERFQGENRILKRAVNIQNTRCKDVEAQLGAAQEAAAAAAAYAKRVEQVNYALGVRVQQMEGMGGEGGGFMERQPPDVY 270
            MREAMGALARDLERFQGENRILKRAVNIQNTRCKDVEAQLGAAQEAAAAAAAYAKRVEQVNYALGVRVQQMEGMGGEGGGFMERQPPDVY
Sbjct:    1 MREAMGALARDLERFQGENRILKRAVNIQNTRCKDVEAQLGAAQEAAAAAAAYAKRVEQVNYALGVRVQQMEGMGGEGGGFMERQPPDVY 90

[Close]

BLAST of jgi.p|Trimin1|179121 vs. uniprot
Match: D8LLL4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLL4_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.020e-16
Identity = 49/91 (53.85%), Postives = 60/91 (65.93%), Query Frame = 1

Query:    1 MREAMGALARDLERFQGENRILKRAVNIQNTRCKDVEAQLGAAQEAAAAAAAYAKRVEQVNYALGVRVQQMEGMGGEGGGFMERQ-PPDVY 270
            ++E +G   ++LER   ENRILKRAV IQNT+ K++E QL   Q+AA  AA Y KR+EQ NYAL VRVQ M   G     FM  Q PPDV+
Sbjct:  160 LKEGVGMFQKELERLSAENRILKRAVGIQNTKGKELEGQLHGLQQAAGQAAEYVKRLEQTNYALSVRVQAMGNSGASD--FMGGQRPPDVF 248

[Close]

BLAST of jgi.p|Trimin1|179121 vs. uniprot
Match: D0P4Q0_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P4Q0_PHYIT)

HSP 1 Score: 59.7 bits (143), Expect = 1.260e-9
Identity = 39/89 (43.82%), Postives = 54/89 (60.67%), Query Frame = 1

Query:    7 EAMGALARDLERFQGENRILKRAVNIQNTRCKDVEAQLGAAQEAAAAAAAYAKRVEQVNYALGVRVQQMEGMG-GEGGGFMERQPPDVY 270
            E + A A D  R QGEN++LKRAV IQN + ++V+ +  A ++ A  AA + KR+EQ NY L V +Q     G G      ++QPPDVY
Sbjct:   20 ERVDAQASDAARLQGENKLLKRAVAIQNQQKEEVQNENNALKQLATQAAEHMKRLEQANYTLRVHLQTSTNAGLGH-----QQQPPDVY 103

[Close]

BLAST of jgi.p|Trimin1|179121 vs. uniprot
Match: A0A6A3Z7N1_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Z7N1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.290e-9
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 1

Query:    7 EAMGALARDLERFQGENRILKRAVNIQNTRCKDVEAQLGAAQEAAAAAAAYAKRVEQVNYALGVRVQQMEGMGGEGGGFMERQPPDVY 270
            E +   A D+ R QGEN++LKRAV IQN + ++V+ +  A ++ A  AA + +R+EQ NY L V +Q         G   ++QPPDVY
Sbjct:  100 ERVAQQASDVARLQGENKLLKRAVGIQNQQKEEVQHENNALKQLATQAAEHMRRLEQANYTLRVHLQTST----SAGNGHQQQPPDVY 183

[Close]

BLAST of jgi.p|Trimin1|179121 vs. uniprot
Match: H3H1K6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1K6_PHYRM)

HSP 1 Score: 58.5 bits (140), Expect = 1.580e-8
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 1

Query:    7 EAMGALARDLERFQGENRILKRAVNIQNTRCKDVEAQLGAAQEAAAAAAAYAKRVEQVNYALGVRVQQMEGMGGEGGGFMERQPPDVY 270
            E + A A D+ R  GEN++LKRAV IQN + ++V+ +  A ++ A  AA + KR+EQ NY L V +Q         G     QPPDVY
Sbjct:   97 ERVAAQASDVARLHGENKLLKRAVAIQNQQKEEVQHENSALKQLATQAAEHMKRLEQANYTLRVHLQTST----SAGNGHHYQPPDVY 180

[Close]

BLAST of jgi.p|Trimin1|179121 vs. uniprot
Match: A0A1V9YVA2_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVA2_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 6.440e-8
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 1

Query:    1 MREAMGALARDLERFQGENRILKRAVNIQNTRCKDVEAQLGAAQEAAAAAAAYAKRVEQVNYALGVRVQQMEGMGGEGGGFMERQPPDVY 270
            MR      AR+LE+ QGEN+IL+RAV IQN + ++   +    ++ A  AA + KR+EQ NYAL V +Q   G+ G    F     PDVY
Sbjct:   99 MRGVCTEQARELEKIQGENKILRRAVAIQNQQKEETSQENAVLKQLAHQAADHIKRLEQTNYALRVHLQTSTGLIGSSDTFS----PDVY 184

[Close]

BLAST of jgi.p|Trimin1|179121 vs. uniprot
Match: G4ZQH3_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZQH3_PHYSP)

HSP 1 Score: 56.2 bits (134), Expect = 1.140e-7
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 1

Query:   25 ARDLERFQGENRILKRAVNIQNTRCKDVEAQLGAAQEAAAAAAAYAKRVEQVNYALGVRVQQMEGMG-GEGGGFMERQPPDVY 270
            A ++ R QGEN++LKRAVNIQN + + +E +  A ++ A  AA + +R+EQ NY L V +Q     G G      ++QPPDVY
Sbjct:  100 AGEVARLQGENKLLKRAVNIQNEQNQAMEQENTALKQLATQAAEHIRRLEQANYTLRVHLQTSTSAGLGH-----QQQPPDVY 177

[Close]

BLAST of jgi.p|Trimin1|179121 vs. uniprot
Match: A0A662WKW3_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WKW3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.730e-7
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 1

Query:   25 ARDLERFQGENRILKRAVNIQNTRCKDVEAQLGAAQEAAAAAAAYAKRVEQVNYALGVRVQQMEGMGGEGGGFMERQPPDVY 270
            ++D+ER QGEN++LKRA+ IQ+ +  +V+ +  A +     AA + KR+EQ NY L V +Q         G    +QPPDVY
Sbjct:  115 SKDVERLQGENKLLKRAIAIQSQQKDEVQQENAALRNLTTQAAEHIKRLEQANYTLRVHLQTST----NSGHGHRQQPPDVY 192

[Close]

BLAST of jgi.p|Trimin1|179121 vs. uniprot
Match: D0MRK8_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MRK8_PHYIT)

HSP 1 Score: 53.1 bits (126), Expect = 4.360e-7
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 1

Query:    7 EAMGALARDLERFQGENRILKRAVNIQNTRCKDVEAQLGAAQEAAAAAAAYAKRVEQVNYALGVRVQ 207
            E + A A D  R QGEN++LKRAV IQN + ++V+ +  A ++ A  AA + KR+EQ NY L V +Q
Sbjct:    2 ERVAAQASDAARLQGENKLLKRAVAIQNQQKEEVQNENNALKQLATQAAEHMKRLEQANYTLRVHLQ 68

[Close]

BLAST of jgi.p|Trimin1|179121 vs. uniprot
Match: A0A484E156_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E156_BRELC)

HSP 1 Score: 53.9 bits (128), Expect = 9.030e-7
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 1

Query:    7 EAMGALARDLERFQGENRILKRAVNIQNTRCKDVEAQLGAAQEAAAAAAAYAKRVEQVNYALGVRVQQMEGMGGEGGGFMERQPPDVY 270
            E +   A D+ R Q EN++LKRAV IQN + ++V ++  A +E A  AA + +R+EQ N+ L V +Q         G   + QPPDVY
Sbjct:   98 ERVAYQANDIVRLQSENKVLKRAVAIQNQQKEEVLSENNALKELATQAAEHMRRLEQANFTLRVHLQTST----NAGFGHQYQPPDVY 181

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|179121 vs. uniprot

BLAST of jgi.p|Trimin1|179121 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13


Match Name	E-value	Identity	Description
A0A836CIB6_9STRA	1.910e-53	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D8LLL4_ECTSI	1.020e-16	53.85	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
D0P4Q0_PHYIT	1.260e-9	43.82	Uncharacterized protein n=1 Tax=Phytophthora infes...	[more]
A0A6A3Z7N1_9STRA	4.290e-9	40.91	Uncharacterized protein n=4 Tax=Phytophthora TaxID...	[more]
H3H1K6_PHYRM	1.580e-8	42.05	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]
A0A1V9YVA2_9STRA	6.440e-8	42.22	Uncharacterized protein n=1 Tax=Thraustotheca clav...	[more]
G4ZQH3_PHYSP	1.140e-7	43.37	Uncharacterized protein n=1 Tax=Phytophthora sojae...	[more]
A0A662WKW3_9STRA	2.730e-7	40.24	Uncharacterized protein n=2 Tax=Nothophytophthora ...	[more]
D0MRK8_PHYIT	4.360e-7	46.27	Uncharacterized protein n=1 Tax=Phytophthora infes...	[more]
A0A484E156_BRELC	9.030e-7	39.77	Uncharacterized protein n=1 Tax=Bremia lactucae Ta...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_185	contig	Contig_185:215475..215747 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|179121\|e_gw1.185.42.1
Max annot lvl	4776\|Peronosporales
EggNOG OGs	2C7QW@1\|root,2QRNX@2759\|Eukaryota,3Q948@4776\|Peronosporales
Evalue	2.07e-10
Seed ortholog	4787.PITG_21906T0
Hectar predicted targeting category	other localisation
TranscriptId	179443
Track	FilteredModels1
ProteinId	179121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|179121	gene_15486	Tribonema minus UTEX_B_3156	gene	Contig_185 215475..215747 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_15486_1	exon_15486_1	Tribonema minus UTEX_B_3156	exon	Contig_185 215475..215747 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_15486	CDS_15486	Tribonema minus UTEX_B_3156	CDS	Contig_185 215475..215747 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|179121	Trimin1\|179121\|e_gw1.185.42.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_185 215475..215747 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_185:215475..215747-
coding sequence from alignment at Contig_185:215475..215747-

spliced messenger RNA

>mRNA_15486 ID=mRNA_15486|Name=jgi.p|Trimin1|179121|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_185:215475..215747- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGGAGGCCATGGGCGCCTTGGCCCGCGACCTGGAGCGGTTCCAGGG
GGAGAACCGCATCCTCAAGCGCGCGGTGAACATCCAGAACACGCGCTGCA
AGGACGTGGAGGCGCAGCTGGGGGCGGCACAGGAGGCGGCGGCGGCGGCG
GCGGCGTACGCCAAGAGGGTGGAGCAGGTGAACTACGCGCTGGGGGTGCG
CGTGCAGCAGATGGAGGGGATGGGGGGGGAGGGCGGCGGTTTCATGGAGC
GCCAACCCCCTGATGTCTACTGA

protein sequence of jgi.p|Trimin1|179121

>Trimin1|179121|e_gw1.185.42.1 ID=Trimin1|179121|e_gw1.185.42.1|Name=jgi.p|Trimin1|179121|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=91bp
MREAMGALARDLERFQGENRILKRAVNIQNTRCKDVEAQLGAAQEAAAAA
AAYAKRVEQVNYALGVRVQQMEGMGGEGGGFMERQPPDVY*

mRNA from alignment at Contig_185:215475..215747-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_15486 ID=mRNA_15486|Name=jgi.p|Trimin1|179121|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_185:215475..215747- (Tribonema minus UTEX_B_3156 )
ATGCGGGAGGCCATGGGCGCCTTGGCCCGCGACCTGGAGCGGTTCCAGGG
GGAGAACCGCATCCTCAAGCGCGCGGTGAACATCCAGAACACGCGCTGCA
AGGACGTGGAGGCGCAGCTGGGGGCGGCACAGGAGGCGGCGGCGGCGGCG
GCGGCGTACGCCAAGAGGGTGGAGCAGGTGAACTACGCGCTGGGGGTGCG
CGTGCAGCAGATGGAGGGGATGGGGGGGGAGGGCGGCGGTTTCATGGAGC
GCCAACCCCCTGATGTCTACTGA

Coding sequence (CDS) from alignment at Contig_185:215475..215747-

>mRNA_15486 ID=mRNA_15486|Name=jgi.p|Trimin1|179121|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=273bp|location=Sequence derived from alignment at Contig_185:215475..215747- (Tribonema minus UTEX_B_3156 )
ATGCGGGAGGCCATGGGCGCCTTGGCCCGCGACCTGGAGCGGTTCCAGGG
GGAGAACCGCATCCTCAAGCGCGCGGTGAACATCCAGAACACGCGCTGCA
AGGACGTGGAGGCGCAGCTGGGGGCGGCACAGGAGGCGGCGGCGGCGGCG
GCGGCGTACGCCAAGAGGGTGGAGCAGGTGAACTACGCGCTGGGGGTGCG
CGTGCAGCAGATGGAGGGGATGGGGGGGGAGGGCGGCGGTTTCATGGAGC
GCCAACCCCCTGATGTCTACTGA