mRNA_15455 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|354008 vs. uniprot
Match: A0A835Z2S9_9STRA (Mitotic checkpoint protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2S9_9STRA) HSP 1 Score: 1018 bits (2631), Expect = 0.000e+0 Identity = 668/668 (100.00%), Postives = 668/668 (100.00%), Query Frame = 1
Query: 1 MLRRGDPRSRLVGQQQLHYDRHILTVINKEISAFLDHVLPSFAPSYVPPALREARLREQVTALQAKLDSLTEPPASASNKRLRSTYDAGSALVAQQVEAERLRTALEQVKLERDKDSHRHAKAVGELESEKQRLTRQITFLVSQEQAAVEELQTKQAQWLDEKLRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSALRLRDVETSXXXXXXRLAQREDVCACVVALQDEAAGLRTQLDKAREYVSAAETVKLELEVLKEVQGEWVRLFTQVAAGAGLAGYTECTPAEAIAVVQKLQQDHAALLSRCMDAKSHLTLKTEEARASAKRAEHEAAAAKALRVSLTEAQSALRLERSARDTHAAELAALREVLDTYSADPTVKGRWEGEARVAAEKALAAAKDELRQLRARLAEGSSVPSGVADALRERVAEVEREAARAAAARDAQERRCEALEAELARHEHRVGLGEFDPAVTKVLHFSRNPAAIAAGKRAEGAKDKELEDLRRVQENLQEQMYAQKSQFFRRAVTHLMGYKVDLNTEKGNPQIKLHSIYSDHEDDYLLFQWVDGQPQLLMTPLTNRLERKVFTYLSTCNSIPAFLASIILDQFEKQTFQVG 2004
MLRRGDPRSRLVGQQQLHYDRHILTVINKEISAFLDHVLPSFAPSYVPPALREARLREQVTALQAKLDSLTEPPASASNKRLRSTYDAGSALVAQQVEAERLRTALEQVKLERDKDSHRHAKAVGELESEKQRLTRQITFLVSQEQAAVEELQTKQAQWLDEKLRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSALRLRDVETSXXXXXXRLAQREDVCACVVALQDEAAGLRTQLDKAREYVSAAETVKLELEVLKEVQGEWVRLFTQVAAGAGLAGYTECTPAEAIAVVQKLQQDHAALLSRCMDAKSHLTLKTEEARASAKRAEHEAAAAKALRVSLTEAQSALRLERSARDTHAAELAALREVLDTYSADPTVKGRWEGEARVAAEKALAAAKDELRQLRARLAEGSSVPSGVADALRERVAEVEREAARAAAARDAQERRCEALEAELARHEHRVGLGEFDPAVTKVLHFSRNPAAIAAGKRAEGAKDKELEDLRRVQENLQEQMYAQKSQFFRRAVTHLMGYKVDLNTEKGNPQIKLHSIYSDHEDDYLLFQWVDGQPQLLMTPLTNRLERKVFTYLSTCNSIPAFLASIILDQFEKQTFQVG
Sbjct: 1 MLRRGDPRSRLVGQQQLHYDRHILTVINKEISAFLDHVLPSFAPSYVPPALREARLREQVTALQAKLDSLTEPPASASNKRLRSTYDAGSALVAQQVEAERLRTALEQVKLERDKDSHRHAKAVGELESEKQRLTRQITFLVSQEQAAVEELQTKQAQWLDEKLRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSALRLRDVETSXXXXXXRLAQREDVCACVVALQDEAAGLRTQLDKAREYVSAAETVKLELEVLKEVQGEWVRLFTQVAAGAGLAGYTECTPAEAIAVVQKLQQDHAALLSRCMDAKSHLTLKTEEARASAKRAEHEAAAAKALRVSLTEAQSALRLERSARDTHAAELAALREVLDTYSADPTVKGRWEGEARVAAEKALAAAKDELRQLRARLAEGSSVPSGVADALRERVAEVEREAARAAAARDAQERRCEALEAELARHEHRVGLGEFDPAVTKVLHFSRNPAAIAAGKRAEGAKDKELEDLRRVQENLQEQMYAQKSQFFRRAVTHLMGYKVDLNTEKGNPQIKLHSIYSDHEDDYLLFQWVDGQPQLLMTPLTNRLERKVFTYLSTCNSIPAFLASIILDQFEKQTFQVG 668
BLAST of jgi.p|Trimin1|354008 vs. uniprot
Match: A0A7S3YG22_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG22_HETAK) HSP 1 Score: 132 bits (333), Expect = 4.940e-31 Identity = 93/265 (35.09%), Postives = 133/265 (50.19%), Query Frame = 1
Query: 1339 AAEKALAAAKDELRQLRARLAEGSSVPSGVADALRERVAEVEREAARAAAARDAQERRCEALEAELARHEHRVGLGEFDPAVTKVLHFSRNPAAIAAGKRAEGAKDKELEDLRRVQENLQEQMYAQKSQF---------------------------------------------FRRAVTHLMGYKVDLNTEKGNPQIKLHSIYSDHEDDYLLFQWVDGQPQLLMTPLTNRLERKVFTYLSTCNSIPAFLASIILDQFEKQTFQ 1998
A E +L AA++E+++LRAR A + P+ V RER A +E A R E E ELAR+EH G+++PA TKVLH NPAA A +R + A +EL LR E L++++ QK+ FR AV L GYK+D+ P+++L S+++++E D LLFQW G +L T +++RKVF YL CNS+PAFL+++ L+ FE QTFQ
Sbjct: 6 ALEASLRAAREEIKELRARSA--AMTPATVLAKNRERAARLEARLEAEEAKSAGLRRHLEKAERELARYEHEAAKGDYNPATTKVLHLKMNPAARARAQRTQDAAARELAALREENEQLKKELQQQKANTSSDGNTSIMHHSNELNSSRLEGSSGVDSSKLNQRLKEMFKEQIARFREAVYLLFGYKLDMGGAHARPKLRLRSMFAENESDDLLFQWGKGGLELCETDFATKIDRKVFVYLHQCNSVPAFLSNVTLNLFEAQTFQ 268
BLAST of jgi.p|Trimin1|354008 vs. uniprot
Match: A0A7S3PFY6_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PFY6_9STRA) HSP 1 Score: 105 bits (262), Expect = 2.050e-20 Identity = 65/204 (31.86%), Postives = 107/204 (52.45%), Query Frame = 1
Query: 1516 EALEAELARHEHRVGLGEFDPAVTKVLHFSRNPAAIAAGKRAEGAKDKELEDLRRVQENLQE-----------------------------------------QMYAQKSQFFRRAVTHLMGYKVDLNTEKGNPQIKLHSIYSDHEDDYLLFQW---VDGQPQLLMTPLTNRLERKVFTYLSTCNSIPAFLASIILDQFEKQTF 1995
E EA++A EH V G ++P+ KV+H + NP + R+ + ++E++ L+R L E +++ QK++ FR AV L G+ +D+ T+ NPQ+++ S++++ EDD+LLF+W V+G LL T +R++ +F YL CNS+PAFL+++ LD FEKQTF
Sbjct: 236 EKAEAKVAELEHHVSRGSYNPSKEKVVHMTMNPERVLRNGRS-NSMEEEIKRLKRANAVLTEKFNDLIAGNPTATLQADNFSPLTSTSGSNQQDLGKRHERLKELFKQKTKAFREAVYLLTGFMIDM-TQDQNPQLRVRSMFAEREDDHLLFKWQPDVEGGLHLLETDFCSRIDENIFAYLKKCNSVPAFLSTLTLDLFEKQTF 437
BLAST of jgi.p|Trimin1|354008 vs. uniprot
Match: A0A662WZU4_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WZU4_9STRA) HSP 1 Score: 102 bits (254), Expect = 6.780e-19 Identity = 65/173 (37.57%), Postives = 98/173 (56.65%), Query Frame = 1
Query: 1516 EALEAELARHEHRVGLGEFDPAVTKVLHFSRNPAAIAAGKRAEGAKDKELEDLRRVQENLQE-----------QMYAQKSQFFRRAVTHLMGYKVDLNTEKGNPQIKLHSIYSDHEDDYLLFQW-VDGQPQLLMTPLTNRLERKVFTYLSTCNSIPAFLASIILDQFEKQTFQ 1998
E +E ELA E R+G GEF+ TK++H + NP RA K ++E LR+ L+ +++ + + +R AV L G+KVDL G + L S+Y+DH+DD LL + +G +LL T +++ ++VF YL+TC S PAFL+++ L FEKQTFQ
Sbjct: 477 EKVEMELAIFEKRLGRGEFNVETTKIVHLAVNPTHEMLQNRA---KLSDIEKLRQENALLRSKLEKLTGVADTELFRDQIRQYREAVFLLTGFKVDLKRSNGMELLTLRSVYADHDDDELLVRMEANGSLELLETEYCSQINQRVFAYLTTCRSFPAFLSTLTLHLFEKQTFQ 646
BLAST of jgi.p|Trimin1|354008 vs. uniprot
Match: A0A2D4BPS8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BPS8_PYTIN) HSP 1 Score: 99.0 bits (245), Expect = 1.410e-18 Identity = 67/206 (32.52%), Postives = 102/206 (49.51%), Query Frame = 1
Query: 1522 LEAELARHEHRVGLGEFDPAVTKVLHFSRNPAAIAAGKRAEGAKDKELEDLRRVQENLQ----------------------------------------------EQMYAQKSQFFRRAVTHLMGYKVDLNTEKGNPQIKLHSIYSDHEDDYLLFQWV-DGQPQLLMTPLTNRLERKVFTYLSTCNSIPAFLASIILDQFEKQTFQ 1998
LE + A+ E R+G GEF+PA TKV+H S NP + G++ + E E LR+ E L+ ++++ ++Q +R AV L G+K+DL G ++L S+Y+DH+DD LL + +G +LL T ++ ++VF YL+T S PAFLA++ L FEKQTFQ
Sbjct: 170 LEEDCAKMEKRLGRGEFNPATTKVVHLSLNPTSELLGEKNATS---ECEQLRKENEQLRSALKASAVKTTPGVAVTPASSTSTAKLTTTTSYETVEGQKLLNQRLKEVFRDQTQQYREAVFQLTGFKIDLKKSSGVEILRLRSMYADHDDDELLVRMEPNGALELLETDFCGQINQRVFAYLTTXRSFPAFLATLTLHLFEKQTFQ 372
BLAST of jgi.p|Trimin1|354008 vs. uniprot
Match: H3GCL4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GCL4_PHYRM) HSP 1 Score: 99.4 bits (246), Expect = 7.550e-18 Identity = 67/202 (33.17%), Postives = 105/202 (51.98%), Query Frame = 1
Query: 1516 EALEAELARHEHRVGLGEFDPAVTKVLHFSRNPAAIAAGKRAE----------------------GAKDKEL------------------EDLRRVQENLQEQMYAQKSQFFRRAVTHLMGYKVDLNTEKGNPQIKLHSIYSDHEDDYLLFQW-VDGQPQLLMTPLTNRLERKVFTYLSTCNSIPAFLASIILDQFEKQTFQ 1998
E E ELA +E R+G GEF+ TK++H + NP +A+ G +D E+ E L+++ + L+ Q+++ + + +R AV L GYKVDL G ++L S+Y+DHEDD LL + +G +LL + +++ ++VF YL+TC S PAFL+++ L FEKQTFQ
Sbjct: 525 EKAEMELAIYEKRLGRGEFNVETTKIVHLAVNPTRELLQSKAKSSDVEKLRQENEALRARLDKLTGGEDTEVPSIHAEDKLTTTTSYETVEGLKKLNQRLK-QVFSDQIRQYREAVFLLTGYKVDLKKSNGMELLRLRSVYADHEDDELLVRMEANGSLELLDSEFCSQINQRVFAYLTTCRSFPAFLSTLTLHLFEKQTFQ 725
BLAST of jgi.p|Trimin1|354008 vs. uniprot
Match: K3WJQ4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJQ4_GLOUD) HSP 1 Score: 99.0 bits (245), Expect = 1.050e-17 Identity = 70/207 (33.82%), Postives = 100/207 (48.31%), Query Frame = 1
Query: 1516 EALEAELARHEHRVGLGEFDPAVTKVLHFSRNPAAIAAGKRAEGAKDKELEDLRRVQENLQ---------------------------------------------EQMYAQKSQFFRRAVTHLMGYKVDLNTEKGNPQIKLHSIYSDHEDDYLLFQW-VDGQPQLLMTPLTNRLERKVFTYLSTCNSIPAFLASIILDQFEKQTFQ 1998
E +E ELA E R+G GEF+ TK++H S NP + K E+E LR+ E L+ ++++ ++ Q +R AV L GYKVDL G ++L S+Y+DH+DD LL + DG +LL T ++ ++VF YL+TC S PAFLA++ L FEKQTFQ
Sbjct: 557 EKVEMELALLEKRLGKGEFNVETTKIVHLSVNPTREMLENKV---KTSEVEKLRQENEVLRSKIEKLSGSGADLEMTTTPASSEATFTTTTSYETVEGQKLLNKRLKEVFREQIQQYREAVYLLTGYKVDLKKSNGMELLRLRSVYADHDDDELLVRMEADGALELLETDFCAQINQRVFAYLTTCRSFPAFLATLTLHLFEKQTFQ 760
BLAST of jgi.p|Trimin1|354008 vs. uniprot
Match: W2RBQ8_PHYPN (Uncharacterized protein n=46 Tax=Phytophthora TaxID=4783 RepID=W2RBQ8_PHYPN) HSP 1 Score: 95.9 bits (237), Expect = 9.460e-17 Identity = 88/287 (30.66%), Postives = 141/287 (49.13%), Query Frame = 1
Query: 1261 AALREVLDTYSADPTVKGRWE-GEARVAAEKALAAAKDELRQLRARLAEGSSVPSGVADALRERVAEVEREAARAAAARDAQERRCEALEAELARHEHRVGLGEFDPAVTKVLHFSRNP----------------------------AAIAAGKRAEG---AKDK--------ELEDLRRVQENLQEQMYAQKSQFFRRAVTHLMGYKVDLNTEKGNPQIKLHSIYSDHEDDYLLFQWV-DGQPQLLMTPLTNRLERKVFTYLSTCNSIPAFLASIILDQFEKQTFQ 1998
A L E+L+TY DP + E RVA ++L EL + + + P+ V R+ +E+ A A ++ E E ELA E R+G GEF+ TK++H + NP + + G+ AE A+DK +E L+++ + L+ Q++ + + +R AV L GYKVDL G ++L S+Y++H+DD LL + +G +LL + +++ ++VF YL+TC S PAFL+++ L FEKQTFQ
Sbjct: 456 AELIEILETYGKDPDDQEANELSTKRVALLESLLKQSQELIKGMESTQKSMATPAAVKK-YESRIERLEKALADAKQENGNLKKHLEKAEMELAVFEKRLGRGEFNVETTKIVHLAVNPTRELLQSKAKSSDIEKLRQENEALRSRLSKLTDGEDAESPGIAEDKLTTTTSYDTVEGLKKLNQRLK-QVFGDQIRQYREAVYLLTGYKVDLRKSNGMELLRLRSVYAEHDDDELLVRMESNGSLELLDSEFCSQINQRVFAYLTTCRSFPAFLSTLTLHLFEKQTFQ 740
BLAST of jgi.p|Trimin1|354008 vs. uniprot
Match: A0A662X4C9_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4C9_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.170e-16 Identity = 69/202 (34.16%), Postives = 100/202 (49.50%), Query Frame = 1
Query: 1516 EALEAELARHEHRVGLGEFDPAVTKVLHFSRNPAAIAAGKRAE----------------------GAKDKE------------------LEDLRRVQENLQEQMYAQKSQFFRRAVTHLMGYKVDLNTEKGNPQIKLHSIYSDHEDDYLLFQW-VDGQPQLLMTPLTNRLERKVFTYLSTCNSIPAFLASIILDQFEKQTFQ 1998
E +E ELA E R+G GEF+ TK++H + NP RA+ G D E +E L+++ + L+E Q Q+ R AV L G+KVDL G + L S+Y+DH+DD LL + +G +LL T +++ ++VF YL+TC S PAFL+++ L FEKQTFQ
Sbjct: 501 EKVEMELAIFEKRLGRGEFNVETTKIVHLAVNPTHEMLQNRAKLSDIEKLRQENELLRSKLEKLTGGADTEAQSSATGDQFTTTTSYDTVEGLKKLNQRLKEVRQDQIRQY-REAVFLLTGFKVDLKKSNGMELLTLRSVYADHDDDELLVRMEANGSLELLETEYCSQINQRVFAYLTTCRSFPAFLSTLTLHLFEKQTFQ 701
BLAST of jgi.p|Trimin1|354008 vs. uniprot
Match: M4B946_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B946_HYAAE) HSP 1 Score: 95.1 bits (235), Expect = 1.660e-16 Identity = 66/204 (32.35%), Postives = 99/204 (48.53%), Query Frame = 1
Query: 1516 EALEAELARHEHRVGLGEFDPAVTKVLHFSRNPAAIAAGKRAEGAKDKELEDLRRVQENLQ------------------------------------------EQMYAQKSQFFRRAVTHLMGYKVDLNTEKGNPQIKLHSIYSDHEDDYLLFQW-VDGQPQLLMTPLTNRLERKVFTYLSTCNSIPAFLASIILDQFEKQTFQ 1998
E E ELA E R+G GEF+ TK++H + NP +A ++E+LRR E L+ +Q++ + + +R AV L GYKVDL G ++L S+Y++H+DD LL + G +LL + +R+ ++VF YL+TC S PAFL+++ L FEKQTFQ
Sbjct: 546 EKAEMELAVFEKRLGKGEFNVETTKIVHLAVNPTRELLQSKATS---NDVENLRRENEALRARLTKLTDGGDVESPGVCVEDKLTTTTSYDTVDGLKKLNQRLKQVFGDQIRQYREAVYLLTGYKVDLKKSNGMEMLRLRSMYAEHDDDDLLIRMEASGSLELLDSDFCSRINQRVFAYLTTCRSFPAFLSTLTLHLFEKQTFQ 746
BLAST of jgi.p|Trimin1|354008 vs. uniprot
Match: A0A835Z9X6_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X6_9STRA) HSP 1 Score: 179 bits (453), Expect = 1.820e-56 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 3
Query: 96 MPTQTLPGIIIVGAAVGLAGAILGGVHRLSTGEWRMSGRTKWDFDCANRDKRVRAWQKQIDKQLADQAKDPAAAEALSYYPIAHEDYE 359
MPTQTLPGIIIVGAAVGLAGAILGGVHRLSTGEWRMSGRTKWDFDCANRDKRVRAWQKQIDKQLADQAKDPAAAEALSYYPIAHEDYE
Sbjct: 1 MPTQTLPGIIIVGAAVGLAGAILGGVHRLSTGEWRMSGRTKWDFDCANRDKRVRAWQKQIDKQLADQAKDPAAAEALSYYPIAHEDYE 88 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354008 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to top
BLAST of jgi.p|Trimin1|354008 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15455 ID=mRNA_15455|Name=jgi.p|Trimin1|354008|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2137bp|location=Sequence derived from alignment at Contig_202:230969..237035+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTGCGACGTGGTGATCCTCGCAGCAGGCTTGTTGGCCAGCAGCAGCTback to top protein sequence of jgi.p|Trimin1|354008 >Trimin1|354008|estExt_Genemark1.C_Ctg_2020039 ID=Trimin1|354008|estExt_Genemark1.C_Ctg_2020039|Name=jgi.p|Trimin1|354008|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=669bp MLRRGDPRSRLVGQQQLHYDRHILTVINKEISAFLDHVLPSFAPSYVPPAback to top mRNA from alignment at Contig_202:230969..237035+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15455 ID=mRNA_15455|Name=jgi.p|Trimin1|354008|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6067bp|location=Sequence derived from alignment at Contig_202:230969..237035+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_202:230969..237035+ >mRNA_15455 ID=mRNA_15455|Name=jgi.p|Trimin1|354008|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2007bp|location=Sequence derived from alignment at Contig_202:230969..237035+ (Tribonema minus UTEX_B_3156 )back to top |