mRNA_15452 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354005
Unique NamemRNA_15452
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354005 vs. uniprot
Match: A0A836CHC6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC6_9STRA)

HSP 1 Score: 479 bits (1234), Expect = 4.120e-165
Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 3 
Query:    6 MAEDDDALFAAFLGEIKAVDAPPAEXXXXXXXXPADAALAGTKRTAEQAMGAAAAGEASSRPQKSFVSAPARPSIVAAPVPRAAAKQASPVPEQASLPALEQQKSPGTSPXXXXXXXXXXXXXXXXXXXXXXXXPMLPPEVATSHPMNGSGGLPQPGFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPSGYLYDPFAXXXXXXXXXXXXXXXXXXXXXXXXXXPKKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGLL 1088
            MAEDDDALFAAFLGEIKAVDAPPAEXXXXXXXXPADAALAGTKRTAEQAMGAAAAGEASSRPQKSFVSAPARPSIVAAPVPRAAAKQASPVPEQASLPALEQQKSPGTSPXXXXXXXXXXXXXXXXXXXXXXXXPMLPPEVATSHPMNGSGGLPQPGFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPSGYLYDPFAXXXXXXXXXXXXXXXXXXXXXXXXXXPKKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGLL
Sbjct:    1 MAEDDDALFAAFLGEIKAVDAPPAEXXXXXXXXPADAALAGTKRTAEQAMGAAAAGEASSRPQKSFVSAPARPSIVAAPVPRAAAKQASPVPEQASLPALEQQKSPGTSPXXXXXXXXXXXXXXXXXXXXXXXXPMLPPEVATSHPMNGSGGLPQPGFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPSGYLYDPFAXXXXXXXXXXXXXXXXXXXXXXXXXXPKKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGLL 361
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BLAST of jgi.p|Trimin1|354005 vs. uniprot
Match: A0A6H5KAJ6_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ6_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 1.420e-50
Identity = 92/127 (72.44%), Postives = 104/127 (81.89%), Query Frame = 3 
Query:  708 KFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGLL 1088
            KF RV GG +W+D TL EWPEND+RLFVGDLGNEVTD+NLA AF  Y SF KAKV+REK N KSKGYGFVSF DG DM++ALRE+ GKYLGNRPMKISKS+W ER++KEV+KK       KKALGLL
Sbjct:  410 KFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALGLL 536
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BLAST of jgi.p|Trimin1|354005 vs. uniprot
Match: V4B0Y0_LOTGI (RNA-binding protein 42 n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4B0Y0_LOTGI)

HSP 1 Score: 172 bits (436), Expect = 2.360e-48
Identity = 83/127 (65.35%), Postives = 100/127 (78.74%), Query Frame = 3 
Query:  705 KKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGL 1085
            KKFVR   GTTW+D TL+EW  +DFR+F GDLGNEV+DE+LA AFS Y SF KAK+VR++ +NKSKGYGFVSF D  D  RA+R+ NGKY+GNRP+K+ KS+W +RNI  VRKKEK    EKK LGL
Sbjct:   16 KKFVRTAAGTTWEDQTLSEWDNDDFRMFCGDLGNEVSDEHLARAFSKYPSFLKAKIVRDRRSNKSKGYGFVSFKDPGDFTRAMRDMNGKYVGNRPIKLRKSTWRDRNIDIVRKKEK----EKKRLGL 138
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BLAST of jgi.p|Trimin1|354005 vs. uniprot
Match: A0A833WW49_PHYIN (RNA recognition motif-containing protein n=3 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WW49_PHYIN)

HSP 1 Score: 177 bits (449), Expect = 4.470e-48
Identity = 81/123 (65.85%), Postives = 101/123 (82.11%), Query Frame = 3 
Query:  702 PKKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREK 1070
            PK+ +R+ GG  W+DPTL EWP+NDFRLF GDLGNEV+DE LA +FS YASFQ+A+VVR+K  +KS+GYGFVSFAD FD  +ALRE NGKY+GNRP+K+SKS W ERN+   +KK +K KR+K
Sbjct:  180 PKRNLRLAGGQVWEDPTLEEWPDNDFRLFCGDLGNEVSDELLAHSFSQYASFQRARVVRDKLTHKSRGYGFVSFADPFDCAKALREMNGKYIGNRPVKLSKSKWQERNMDVAKKKLRKRKRDK 302
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BLAST of jgi.p|Trimin1|354005 vs. uniprot
Match: A0A7S3JN71_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JN71_9STRA)

HSP 1 Score: 173 bits (438), Expect = 4.810e-48
Identity = 79/124 (63.71%), Postives = 102/124 (82.26%), Query Frame = 3 
Query:  714 VRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGL 1085
            +R  GG TW+D +L+ WPENDFRLFVG+LGNEVTDE ++ AF++YAS  KAKV+REK +NKSKGYGFVSF D +D  +ALRE NGKY+GNRP K+ +S+W +R +KEVRKKEKK+ + KK+ G+
Sbjct:   58 IRHAGGKTWRDDSLDLWPENDFRLFVGNLGNEVTDEIVSHAFASYASLAKAKVIREKFSNKSKGYGFVSFLDPYDCAKALREMNGKYIGNRPCKLQRSNWKDRTLKEVRKKEKKDSKTKKSWGI 181
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BLAST of jgi.p|Trimin1|354005 vs. uniprot
Match: A0A329SBS0_9STRA (RRM domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SBS0_9STRA)

HSP 1 Score: 177 bits (449), Expect = 4.840e-48
Identity = 81/123 (65.85%), Postives = 100/123 (81.30%), Query Frame = 3 
Query:  702 PKKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREK 1070
            PK+ +R+ GG  W+DPTL EWP+NDFRLF GDLGNEV+DE LA +FS YASFQ+A+VVR+K  +KS+GYGFVSF D FD  +ALRE NGKY+GNRP+K+SKS W ERNI   +KK +K KR+K
Sbjct:  183 PKRNLRLAGGEVWEDPTLEEWPDNDFRLFCGDLGNEVSDELLAHSFSQYASFQRARVVRDKLTHKSRGYGFVSFTDPFDCAKALREMNGKYIGNRPVKLSKSKWQERNIDVAKKKMRKRKRDK 305
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BLAST of jgi.p|Trimin1|354005 vs. uniprot
Match: H3GGQ7_PHYRM (RRM domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GGQ7_PHYRM)

HSP 1 Score: 176 bits (447), Expect = 7.230e-48
Identity = 80/122 (65.57%), Postives = 101/122 (82.79%), Query Frame = 3 
Query:  705 KKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREK 1070
            K+ +R+ GG  W+DPTL +WP+NDFRLF GDLGNEV+DE LA +F+AYASFQ+A+VVR+K  +KS+GYGFVSFAD FD  +ALRE NGKY+GNRP+K+SKS W ERNI   +KK +K KR+K
Sbjct:  174 KRHLRLAGGAVWEDPTLEDWPDNDFRLFCGDLGNEVSDELLAHSFAAYASFQRARVVRDKLTHKSRGYGFVSFADPFDCAKALREMNGKYIGNRPVKLSKSKWQERNIDVAKKKIRKRKRDK 295
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BLAST of jgi.p|Trimin1|354005 vs. uniprot
Match: A0A662Y9J8_9STRA (RRM domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y9J8_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.730e-47
Identity = 80/123 (65.04%), Postives = 101/123 (82.11%), Query Frame = 3 
Query:  702 PKKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREK 1070
            PK  +R+GGG  W+DPTL +WPENDFRLF GDLGNEV+DE LA +F+ YASFQ+A+VVR+K  +KS+GYGFVSFAD FD  +ALRE NGKY+GNRP+K+SKS W +RN++  +KK  K KR+K
Sbjct:  232 PKHHLRLGGGAVWEDPTLADWPENDFRLFCGDLGNEVSDELLAHSFAKYASFQRARVVRDKLTHKSRGYGFVSFADPFDCAKALREMNGKYIGNRPVKLSKSKWEDRNLEVAKKKMSKRKRDK 354
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BLAST of jgi.p|Trimin1|354005 vs. uniprot
Match: A0A0B7BTA1_9EUPU (RNA-binding protein 42 (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7BTA1_9EUPU)

HSP 1 Score: 171 bits (434), Expect = 4.810e-47
Identity = 79/127 (62.20%), Postives = 100/127 (78.74%), Query Frame = 3 
Query:  705 KKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGL 1085
            KKF+R+   TTW+DPTL++W ++DFR+F GDLGNEVTDE L  AF+ Y SF KAKV+R++  NK+KGYGFVSF D  D  RA+RE NGKY+GNRP+K+ KSSW +RN++ VRKK+K    EKK LGL
Sbjct:   91 KKFLRLAANTTWEDPTLSDWQQDDFRMFCGDLGNEVTDETLVRAFNKYPSFLKAKVIRDRRTNKTKGYGFVSFKDPLDFARAMREMNGKYVGNRPIKLRKSSWRDRNLEVVRKKDK----EKKKLGL 213
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BLAST of jgi.p|Trimin1|354005 vs. uniprot
Match: V9FTM2_PHYPR (RRM domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=V9FTM2_PHYPR)

HSP 1 Score: 174 bits (441), Expect = 4.980e-47
Identity = 80/123 (65.04%), Postives = 99/123 (80.49%), Query Frame = 3 
Query:  702 PKKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREK 1070
            PK+ +R+ GG  W+D TL EWP+NDFRLF GDLGNEV+DE LA +FS Y SFQ+A+VVR+K  +KS+GYGFVSFAD FD  +ALRE NGKY+GNRP+K+SKS W ERNI   +KK +K KR+K
Sbjct:  170 PKRHLRLAGGQVWEDSTLEEWPDNDFRLFCGDLGNEVSDELLAHSFSQYNSFQRARVVRDKLTHKSRGYGFVSFADPFDCAKALREMNGKYIGNRPVKLSKSKWEERNIDVAKKKMRKRKRDK 292
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354005 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CHC6_9STRA4.120e-165100.00RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5KAJ6_9PHAE1.420e-5072.44RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
V4B0Y0_LOTGI2.360e-4865.35RNA-binding protein 42 n=1 Tax=Lottia gigantea Tax... [more]
A0A833WW49_PHYIN4.470e-4865.85RNA recognition motif-containing protein n=3 Tax=P... [more]
A0A7S3JN71_9STRA4.810e-4863.71Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A329SBS0_9STRA4.840e-4865.85RRM domain-containing protein n=2 Tax=Phytophthora... [more]
H3GGQ7_PHYRM7.230e-4865.57RRM domain-containing protein n=1 Tax=Phytophthora... [more]
A0A662Y9J8_9STRA1.730e-4765.04RRM domain-containing protein n=1 Tax=Nothophytoph... [more]
A0A0B7BTA1_9EUPU4.810e-4762.20RNA-binding protein 42 (Fragment) n=1 Tax=Arion vu... [more]
V9FTM2_PHYPR4.980e-4765.04RRM domain-containing protein n=8 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_202contigContig_202:211710..213181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354005|estExt_Genemark1.C_Ctg_2020036
GOsGO:0000075,GO:0000077,GO:0000278,GO:0000375,GO:0000377,GO:0000398,GO:0001654,GO:0002088,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0006978,GO:0007049,GO:0007050,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007423,GO:0008150,GO:0008152,GO:0008285,GO:0008380,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010467,GO:0010468,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010948,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0022402,GO:0023052,GO:0030330,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031570,GO:0031571,GO:0032501,GO:0032502,GO:0033119,GO:0033554,GO:0034641,GO:0035556,GO:0042127,GO:0042770,GO:0042772,GO:0043010,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043484,GO:0043487,GO:0043488,GO:0043489,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045786,GO:0045787,GO:0045930,GO:0045934,GO:0046483,GO:0048024,GO:0048025,GO:0048255,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048856,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0051726,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070935,GO:0071156,GO:0071158,GO:0071704,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0090068,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902369,GO:1902373,GO:1902400,GO:1902402,GO:1902403,GO:1902806,GO:1902807,GO:1903047,GO:1903311,GO:1903312,GO:2000045,GO:2000134
Preferred nameRBM42
DescriptionRNA binding
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0226@1|root,KOG0226@2759|Eukaryota
Evalue3.22e-48
Seed ortholog2880.D8LJT5
Hectar predicted targeting categoryother localisation
TranscriptId354327
TrackFilteredModels1
ProteinId354005
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354005gene_15452Tribonema minus UTEX_B_3156 geneContig_202 211710..213181 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15452_1exon_15452_1Tribonema minus UTEX_B_3156 exonContig_202 211710..213181 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_15452UTR5_15452Tribonema minus UTEX_B_3156 five_prime_UTRContig_202 211710..211714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15452CDS_15452Tribonema minus UTEX_B_3156 CDSContig_202 211715..212800 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15452UTR3_15452Tribonema minus UTEX_B_3156 three_prime_UTRContig_202 212801..213181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354005Trimin1|354005|estExt_Genemark1.C_Ctg_2020036Tribonema minus UTEX_B_3156 polypeptideContig_202 211715..212800 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15452 ID=mRNA_15452|Name=jgi.p|Trimin1|354005|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1472bp|location=Sequence derived from alignment at Contig_202:211710..213181+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGGGATGGCCGAGGACGACGATGCGCTGTTCGCAGCCTTTCTCGGCGAG
ATCAAGGCCGTGGATGCGCCACCTGCAGAGGAGCAGCAGCAAAAACAGCA
GCAGCCTGCTGATGCTGCGCTTGCGGGCACCAAACGCACAGCGGAGCAGG
CGATGGGAGCGGCGGCTGCTGGCGAAGCCAGCAGCAGGCCTCAAAAGTCA
TTCGTGAGTGCGCCGGCTCGGCCATCGATAGTAGCAGCACCAGTCCCACG
GGCAGCAGCGAAACAGGCATCGCCGGTTCCCGAGCAAGCCTCGCTTCCGG
CGCTCGAGCAGCAGAAGTCCCCTGGCACTTCGCCGCCACCGCCACAACTG
CCGCAACAGCAGCAACCGCATTCAGCAGCTGCGGCGGCGTCACCATCACC
TCCGGCGCCGATGCTGCCTCCCGAAGTTGCAACTTCTCACCCGATGAATG
GCAGCGGAGGCTTGCCACAACCCGGCTTTCCTCCGCCGCCACCACCGATG
ATGGTGCCACCACCAGTGCCACCGCCGCAGCCGTTCATGCCATCCTATCA
ACAGCAATACCAACAGCAGCAGCAGCAGCAGCAAGGCGGCTACCCGAGCG
GCTACTTGTACGACCCGTTCGCCGCAGCAGCAGCGGCAGCAGCACCACAG
CCGCAGCAGCAGCAGCAGCAGCAGCAGGAAGGAGGAGGGAGTGCAAAGAA
GCCAAAAAAGTTTGTGCGGGTGGGGGGCGGGACAACATGGCAAGATCCTA
CCCTCAACGAGTGGCCTGAGAATGACTTCAGGTTATTCGTTGGCGACCTC
GGCAACGAGGTGACGGACGAAAACCTGGCGGAAGCGTTCAGCGCATACGC
CAGCTTTCAGAAGGCCAAAGTCGTACGCGAGAAGCACAACAACAAGAGCA
AGGGCTACGGATTTGTGAGCTTCGCGGACGGCTTCGACATGGTGCGCGCG
CTGCGCGAGAAGAACGGCAAGTACCTGGGCAACCGCCCCATGAAGATCAG
CAAGTCCTCGTGGCACGAGCGCAACATCAAGGAGGTGCGCAAGAAGGAGA
AGAAGAACAAGCGCGAGAAGAAGGCGCTGGGGCTGCTGTGATGCGCGCTA
ACGCAGTTGCAGTCGGCCCCGGTAGCGGCGGCACCGCTGACCTCCGCAGC
ACAAGTCTCAGTCAGCACAGACGTGCCACAGCATTGCATTGCATTGCGGC
ATCTATGGCCCCCAGTGCCGGCATCGAAGACCTTTCACACACAGGCGCAG
CACAGGAGGGCAGTGCACAGCCATATTGCAGGTCTTGCCAGATGAACCGG
CGACTCATGAGAGCAGGGCACCTGTGCTTCTAACGCAGCGCTTGCACTGT
GTAGGGGGGCGTTGTGCAGTAGGCTAAAGTGCCCATTTGTAATGGGACAT
GACAGAGCAATTGTTCAAGTATGCTGCTCCACACAATGCGCCGCCCACAC
TCAATGAAACGGGAGCATGCTT
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protein sequence of jgi.p|Trimin1|354005

>Trimin1|354005|estExt_Genemark1.C_Ctg_2020036 ID=Trimin1|354005|estExt_Genemark1.C_Ctg_2020036|Name=jgi.p|Trimin1|354005|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=362bp
MAEDDDALFAAFLGEIKAVDAPPAEEQQQKQQQPADAALAGTKRTAEQAM
GAAAAGEASSRPQKSFVSAPARPSIVAAPVPRAAAKQASPVPEQASLPAL
EQQKSPGTSPPPPQLPQQQQPHSAAAAASPSPPAPMLPPEVATSHPMNGS
GGLPQPGFPPPPPPMMVPPPVPPPQPFMPSYQQQYQQQQQQQQGGYPSGY
LYDPFAAAAAAAAPQPQQQQQQQQEGGGSAKKPKKFVRVGGGTTWQDPTL
NEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKG
YGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKK
NKREKKALGLL*
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mRNA from alignment at Contig_202:211710..213181+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15452 ID=mRNA_15452|Name=jgi.p|Trimin1|354005|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1472bp|location=Sequence derived from alignment at Contig_202:211710..213181+ (Tribonema minus UTEX_B_3156 )
GGGGGATGGCCGAGGACGACGATGCGCTGTTCGCAGCCTTTCTCGGCGAG
ATCAAGGCCGTGGATGCGCCACCTGCAGAGGAGCAGCAGCAAAAACAGCA
GCAGCCTGCTGATGCTGCGCTTGCGGGCACCAAACGCACAGCGGAGCAGG
CGATGGGAGCGGCGGCTGCTGGCGAAGCCAGCAGCAGGCCTCAAAAGTCA
TTCGTGAGTGCGCCGGCTCGGCCATCGATAGTAGCAGCACCAGTCCCACG
GGCAGCAGCGAAACAGGCATCGCCGGTTCCCGAGCAAGCCTCGCTTCCGG
CGCTCGAGCAGCAGAAGTCCCCTGGCACTTCGCCGCCACCGCCACAACTG
CCGCAACAGCAGCAACCGCATTCAGCAGCTGCGGCGGCGTCACCATCACC
TCCGGCGCCGATGCTGCCTCCCGAAGTTGCAACTTCTCACCCGATGAATG
GCAGCGGAGGCTTGCCACAACCCGGCTTTCCTCCGCCGCCACCACCGATG
ATGGTGCCACCACCAGTGCCACCGCCGCAGCCGTTCATGCCATCCTATCA
ACAGCAATACCAACAGCAGCAGCAGCAGCAGCAAGGCGGCTACCCGAGCG
GCTACTTGTACGACCCGTTCGCCGCAGCAGCAGCGGCAGCAGCACCACAG
CCGCAGCAGCAGCAGCAGCAGCAGCAGGAAGGAGGAGGGAGTGCAAAGAA
GCCAAAAAAGTTTGTGCGGGTGGGGGGCGGGACAACATGGCAAGATCCTA
CCCTCAACGAGTGGCCTGAGAATGACTTCAGGTTATTCGTTGGCGACCTC
GGCAACGAGGTGACGGACGAAAACCTGGCGGAAGCGTTCAGCGCATACGC
CAGCTTTCAGAAGGCCAAAGTCGTACGCGAGAAGCACAACAACAAGAGCA
AGGGCTACGGATTTGTGAGCTTCGCGGACGGCTTCGACATGGTGCGCGCG
CTGCGCGAGAAGAACGGCAAGTACCTGGGCAACCGCCCCATGAAGATCAG
CAAGTCCTCGTGGCACGAGCGCAACATCAAGGAGGTGCGCAAGAAGGAGA
AGAAGAACAAGCGCGAGAAGAAGGCGCTGGGGCTGCTGTGATGCGCGCTA
ACGCAGTTGCAGTCGGCCCCGGTAGCGGCGGCACCGCTGACCTCCGCAGC
ACAAGTCTCAGTCAGCACAGACGTGCCACAGCATTGCATTGCATTGCGGC
ATCTATGGCCCCCAGTGCCGGCATCGAAGACCTTTCACACACAGGCGCAG
CACAGGAGGGCAGTGCACAGCCATATTGCAGGTCTTGCCAGATGAACCGG
CGACTCATGAGAGCAGGGCACCTGTGCTTCTAACGCAGCGCTTGCACTGT
GTAGGGGGGCGTTGTGCAGTAGGCTAAAGTGCCCATTTGTAATGGGACAT
GACAGAGCAATTGTTCAAGTATGCTGCTCCACACAATGCGCCGCCCACAC
TCAATGAAACGGGAGCATGCTT
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Coding sequence (CDS) from alignment at Contig_202:211710..213181+

>mRNA_15452 ID=mRNA_15452|Name=jgi.p|Trimin1|354005|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1086bp|location=Sequence derived from alignment at Contig_202:211710..213181+ (Tribonema minus UTEX_B_3156 )
ATGGCCGAGGACGACGATGCGCTGTTCGCAGCCTTTCTCGGCGAGATCAA
GGCCGTGGATGCGCCACCTGCAGAGGAGCAGCAGCAAAAACAGCAGCAGC
CTGCTGATGCTGCGCTTGCGGGCACCAAACGCACAGCGGAGCAGGCGATG
GGAGCGGCGGCTGCTGGCGAAGCCAGCAGCAGGCCTCAAAAGTCATTCGT
GAGTGCGCCGGCTCGGCCATCGATAGTAGCAGCACCAGTCCCACGGGCAG
CAGCGAAACAGGCATCGCCGGTTCCCGAGCAAGCCTCGCTTCCGGCGCTC
GAGCAGCAGAAGTCCCCTGGCACTTCGCCGCCACCGCCACAACTGCCGCA
ACAGCAGCAACCGCATTCAGCAGCTGCGGCGGCGTCACCATCACCTCCGG
CGCCGATGCTGCCTCCCGAAGTTGCAACTTCTCACCCGATGAATGGCAGC
GGAGGCTTGCCACAACCCGGCTTTCCTCCGCCGCCACCACCGATGATGGT
GCCACCACCAGTGCCACCGCCGCAGCCGTTCATGCCATCCTATCAACAGC
AATACCAACAGCAGCAGCAGCAGCAGCAAGGCGGCTACCCGAGCGGCTAC
TTGTACGACCCGTTCGCCGCAGCAGCAGCGGCAGCAGCACCACAGCCGCA
GCAGCAGCAGCAGCAGCAGCAGGAAGGAGGAGGGAGTGCAAAGAAGCCAA
AAAAGTTTGTGCGGGTGGGGGGCGGGACAACATGGCAAGATCCTACCCTC
AACGAGTGGCCTGAGAATGACTTCAGGTTATTCGTTGGCGACCTCGGCAA
CGAGGTGACGGACGAAAACCTGGCGGAAGCGTTCAGCGCATACGCCAGCT
TTCAGAAGGCCAAAGTCGTACGCGAGAAGCACAACAACAAGAGCAAGGGC
TACGGATTTGTGAGCTTCGCGGACGGCTTCGACATGGTGCGCGCGCTGCG
CGAGAAGAACGGCAAGTACCTGGGCAACCGCCCCATGAAGATCAGCAAGT
CCTCGTGGCACGAGCGCAACATCAAGGAGGTGCGCAAGAAGGAGAAGAAG
AACAAGCGCGAGAAGAAGGCGCTGGGGCTGCTGTGA
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