mRNA_15406 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|353727
Unique Name	mRNA_15406
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|353727 vs. uniprot
Match: A0A836CIR7_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIR7_9STRA)

HSP 1 Score: 639 bits (1649), Expect = 9.340e-229
Identity = 397/397 (100.00%), Postives = 397/397 (100.00%), Query Frame = 1

Query:    1 MIRQPEVCQSGTADAGVDAVSVPPETEEAGSXXXXXXXXXXXXXXXXXXXXXSAAPEVPEKKPVQTTKPAAVACDPGTTXXXXXXXXXXXXXKCDNPWTGADCSQDPCAERSSSCGACKDAAVLGGLSCMWDAESATCFAIALNPETGKPPPFECPAAAPGGPFALVALLXXXXXXXXXXXXXXXXXXXXXXXDSAPTARYTPVPQADSGGVHAAAAAADGWEDWESDGGGEVELGVRRGGGGPGTPAQGGGAPRSSTDAGMKAAIAASLHDAPPQALPLPQRQHSNGSTGDAGAAPLKRGHAPMPLRGGGAAAATGAPRSGATAEPRRSSSEPAPTEDDDLFAELGIEARPVFRPPPVSALRAPTTSRVSSLAALSPEPGGGAGGEWDDGLDDLDT 1191
            MIRQPEVCQSGTADAGVDAVSVPPETEEAGSXXXXXXXXXXXXXXXXXXXXXSAAPEVPEKKPVQTTKPAAVACDPGTTXXXXXXXXXXXXXKCDNPWTGADCSQDPCAERSSSCGACKDAAVLGGLSCMWDAESATCFAIALNPETGKPPPFECPAAAPGGPFALVALLXXXXXXXXXXXXXXXXXXXXXXXDSAPTARYTPVPQADSGGVHAAAAAADGWEDWESDGGGEVELGVRRGGGGPGTPAQGGGAPRSSTDAGMKAAIAASLHDAPPQALPLPQRQHSNGSTGDAGAAPLKRGHAPMPLRGGGAAAATGAPRSGATAEPRRSSSEPAPTEDDDLFAELGIEARPVFRPPPVSALRAPTTSRVSSLAALSPEPGGGAGGEWDDGLDDLDT
Sbjct:    1 MIRQPEVCQSGTADAGVDAVSVPPETEEAGSXXXXXXXXXXXXXXXXXXXXXSAAPEVPEKKPVQTTKPAAVACDPGTTXXXXXXXXXXXXXKCDNPWTGADCSQDPCAERSSSCGACKDAAVLGGLSCMWDAESATCFAIALNPETGKPPPFECPAAAPGGPFALVALLXXXXXXXXXXXXXXXXXXXXXXXDSAPTARYTPVPQADSGGVHAAAAAADGWEDWESDGGGEVELGVRRGGGGPGTPAQGGGAPRSSTDAGMKAAIAASLHDAPPQALPLPQRQHSNGSTGDAGAAPLKRGHAPMPLRGGGAAAATGAPRSGATAEPRRSSSEPAPTEDDDLFAELGIEARPVFRPPPVSALRAPTTSRVSSLAALSPEPGGGAGGEWDDGLDDLDT 397

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353727 vs. uniprot

BLAST of jgi.p|Trimin1|353727 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CIR7_9STRA	9.340e-229	100.00	EGF-like domain-containing protein n=1 Tax=Tribone...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_179	contig	Contig_179:262132..264565 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|353727\|estExt_Genemark1.C_Ctg_1790042
Hectar predicted targeting category	other localisation
TranscriptId	354049
Track	FilteredModels1
ProteinId	353727

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353727	gene_15406	Tribonema minus UTEX_B_3156	gene	Contig_179 262132..264565 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353727	Trimin1\|353727\|estExt_Genemark1.C_Ctg_1790042	Tribonema minus UTEX_B_3156	polypeptide	Contig_179 262132..264496 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_15406_1	exon_15406_1	Tribonema minus UTEX_B_3156	exon	Contig_179 262132..262158 +
exon_15406_2	exon_15406_2	Tribonema minus UTEX_B_3156	exon	Contig_179 262260..262391 +
exon_15406_3	exon_15406_3	Tribonema minus UTEX_B_3156	exon	Contig_179 262488..262663 +
exon_15406_4	exon_15406_4	Tribonema minus UTEX_B_3156	exon	Contig_179 263638..264565 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_15406	CDS_15406	Tribonema minus UTEX_B_3156	CDS	Contig_179 262132..262158 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_15406	UTR3_15406	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_179 264497..264565 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_179:262132..264565+
coding sequence from alignment at Contig_179:262132..264565+

spliced messenger RNA

>mRNA_15406 ID=mRNA_15406|Name=jgi.p|Trimin1|353727|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1263bp|location=Sequence derived from alignment at Contig_179:262132..264565+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATACGGCAGCCGGAAGTTTGCCAGAGCGGCACCGCCGATGCCGGTGT
AGACGCCGTCTCAGTGCCTCCCGAAACAGAAGAGGCGGGGTCCAAGGAGC
AGCAGCAGCATCAGCAGCAGCAGCAGCAGCAGGGAGCTGCGCACCAGCAG
CAGACGTCCGCCGCACCGGAGGTGCCTGAGAAAAAACCCGTGCAGACCAC
CAAGCCCGCTGCTGTTGCATGTGACCCTGGCACAACCTGCAACGAGCACG
GACGCTGTGAGCAGGATGGCAGCTGCAAGTGCGACAATCCCTGGACAGGC
GCGGACTGCAGTCAGGACCCATGCGCTGAGCGCAGCTCCTCCTGCGGCGC
CTGCAAGGACGCGGCAGTGCTCGGCGGCCTCAGCTGCATGTGGGACGCGG
AGTCCGCCACCTGCTTCGCCATAGCCCTCAACCCGGAAACCGGCAAGCCC
CCGCCCTTTGAGTGCCCCGCGGCTGCGCCGGGGGGCCCGTTTGCGCTCGT
CGCGCTGCTCGTCGCCGCGGCCGGCGGCGCGTACTGCTGGCTCAAGCGGC
GGCGGCGGCGCGCCGGCGGCGGCGGCGGCGACAGCGCCCCCACGGCGCGC
TACACGCCCGTGCCGCAGGCAGACAGCGGCGGCGTGCACGCGGCGGCAGC
GGCGGCCGACGGCTGGGAGGACTGGGAGAGCGACGGCGGCGGCGAGGTGG
AGCTGGGAGTGCGGAGGGGAGGGGGGGGGCCTGGCACGCCGGCGCAGGGG
GGGGGGGCGCCGAGGAGCAGCACGGACGCGGGCATGAAGGCGGCGATAGC
GGCGTCGCTGCACGACGCGCCGCCGCAGGCGCTACCGCTACCGCAGCGGC
AGCACAGCAACGGCAGCACCGGCGACGCGGGCGCGGCGCCGCTGAAGCGC
GGGCACGCGCCGATGCCGCTGCGCGGCGGCGGCGCGGCGGCGGCGACGGG
CGCTCCGCGCAGCGGCGCTACCGCGGAGCCGCGGCGGTCCAGCAGTGAGC
CCGCGCCAACGGAGGATGACGACCTGTTTGCGGAGCTGGGCATCGAGGCG
CGGCCCGTGTTCCGGCCGCCGCCTGTGTCAGCGCTCCGCGCACCGACGAC
GAGCCGCGTCTCGTCGCTCGCGGCGCTGTCGCCGGAGCCCGGCGGCGGCG
CGGGCGGGGAGTGGGACGACGGCCTGGACGATCTGGACACCTGAGCGACT
ACGTAGTGTGTGTAGGCAGGAGTGTCAGAAAGCGGCGGCAGTTGGGGACA
TGATGGAAGGGGC

protein sequence of jgi.p|Trimin1|353727

>Trimin1|353727|estExt_Genemark1.C_Ctg_1790042 ID=Trimin1|353727|estExt_Genemark1.C_Ctg_1790042|Name=jgi.p|Trimin1|353727|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=398bp
MIRQPEVCQSGTADAGVDAVSVPPETEEAGSKEQQQHQQQQQQQGAAHQQ
QTSAAPEVPEKKPVQTTKPAAVACDPGTTCNEHGRCEQDGSCKCDNPWTG
ADCSQDPCAERSSSCGACKDAAVLGGLSCMWDAESATCFAIALNPETGKP
PPFECPAAAPGGPFALVALLVAAAGGAYCWLKRRRRRAGGGGGDSAPTAR
YTPVPQADSGGVHAAAAAADGWEDWESDGGGEVELGVRRGGGGPGTPAQG
GGAPRSSTDAGMKAAIAASLHDAPPQALPLPQRQHSNGSTGDAGAAPLKR
GHAPMPLRGGGAAAATGAPRSGATAEPRRSSSEPAPTEDDDLFAELGIEA
RPVFRPPPVSALRAPTTSRVSSLAALSPEPGGGAGGEWDDGLDDLDT*

mRNA from alignment at Contig_179:262132..264565+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_15406 ID=mRNA_15406|Name=jgi.p|Trimin1|353727|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2434bp|location=Sequence derived from alignment at Contig_179:262132..264565+ (Tribonema minus UTEX_B_3156 )
ATGATACGGCAGCCGGAAGTTTGCCAGGTGACCGTACCGATGCTCCCCAA
AGCGTGGTGAGTGAGCAGCATGACGCGCAGCAGCATCAGGAACAGGTTTC
GAAGCCCCCGCAAGCGACTGGGCATGAGAGCGGCACCGCCGATGCCGGTG
TAGACGCCGTCTCAGTGCCTCCCGAAACAGAAGAGGCGGGGTCCAAGGAG
CAGCAGCAGCATCAGCAGCAGCAGCAGCAGCAGGGAGCTGCGCACCAGCA
GCAGACGTCCGTGAAAGCAGAGGAGCAGCCAGGAGGCGAAACAGGGGGGG
CAGGAGTGCATGAACCAGTGGAACCACCCCCGGAGCCCCCGTCTGTGCCG
CCCCAGGCCGCACCGGAGGTGCCTGAGAAAAAACCCGTGCAGACCACCAA
GCCCGCTGCTGTTGCATGTGACCCTGGCACAACCTGCAACGAGCACGGAC
GCTGTGAGCAGGATGGCAGCTGCAAGTGCGACAATCCCTGGACAGGCGCG
GACTGCAGTCAGGACCCATGCGCTGAGCGCAGGTGAGTGGAGCCTTTGCG
CAGGCGCCGCGATTGAAGCATGTCGCAGCGGCATCCAGAAGTGTGACACG
TGCCGATAGCATGCTCGGCACCATGACCGTGCTATGAGCCCGCAAACGGT
GGCGGCCCGGCCTGTGCCCTGACTGCATGGTTCATGATAAGAGCAGTGAT
GATCGAAAATATTCAGAGCACGCACTTGTATCGCTGGCTCTGGTCCCTGG
TGACTGGCCAGATTCATGAGACCAGCTGGTCTTTTGAGTAGTTTGCGAAC
ATTCAGTGTACGTGCGCCTGGCAGGACGTGGAGATTAGGTGCAAACGCAG
CTCTCTGCATCAGGGTGACATGGTACCACTACCAAGCCCGACTGCTTCCG
TGGAGTGCTTACGAGTCTTGGAACGTCACAGCCATTGTGGTCCAGCTCTC
CAGGCAGCGACGGCTACTGTTGTGACCGCATATGTTCTGGGCCTCCTTTG
CCATTCAGCCTCAGCGGTGCACACAGCATGCCTGCTAGCAACATGCCGCT
GTGCTGCATCAGCGCACGCCATGCATTGCCTGTGGCCAGTTACGCAAGCA
ACATGCCGCTGTGCTGCATCAGTGCTCGGCATGCATTGCATGCCGCCTGT
TACCGCACAGCTGGGCAGCGCTGCAGGTCCGGTAGTCATGCGCTGCACTG
CCTGTGCGCGGTATCTCGCTTGACGTCAAGCACATCAAAGTTACTCTGGG
GGTTTCACGTGCTAGGCGACATTGGGTGTGCATTTTGAGTTGTTGGTCAT
CGCAAAGAGTGCTTGTGGTGTACACATTGTGAACAGCGCGCACAGTTCAA
GGTCCACAATTCAGCATCGACCGCATGTTTTCTGCTGCTGCTTTGCAGCA
TTCGCCCAACCGACACGCTCTTCTCGCGTTTACCCCCCCCCCCCACACAC
ACACACCCTCCCCGCCTGCGCCCCCTGCCGCCTCTTACGCCACACCGCGC
GCGCAGCTCCTCCTGCGGCGCCTGCAAGGACGCGGCAGTGCTCGGCGGCC
TCAGCTGCATGTGGGACGCGGAGTCCGCCACCTGCTTCGCCATAGCCCTC
AACCCGGAAACCGGCAAGCCCCCGCCCTTTGAGTGCCCCGCGGCTGCGCC
GGGGGGCCCGTTTGCGCTCGTCGCGCTGCTCGTCGCCGCGGCCGGCGGCG
CGTACTGCTGGCTCAAGCGGCGGCGGCGGCGCGCCGGCGGCGGCGGCGGC
GACAGCGCCCCCACGGCGCGCTACACGCCCGTGCCGCAGGCAGACAGCGG
CGGCGTGCACGCGGCGGCAGCGGCGGCCGACGGCTGGGAGGACTGGGAGA
GCGACGGCGGCGGCGAGGTGGAGCTGGGAGTGCGGAGGGGAGGGGGGGGG
CCTGGCACGCCGGCGCAGGGGGGGGGGGCGCCGAGGAGCAGCACGGACGC
GGGCATGAAGGCGGCGATAGCGGCGTCGCTGCACGACGCGCCGCCGCAGG
CGCTACCGCTACCGCAGCGGCAGCACAGCAACGGCAGCACCGGCGACGCG
GGCGCGGCGCCGCTGAAGCGCGGGCACGCGCCGATGCCGCTGCGCGGCGG
CGGCGCGGCGGCGGCGACGGGCGCTCCGCGCAGCGGCGCTACCGCGGAGC
CGCGGCGGTCCAGCAGTGAGCCCGCGCCAACGGAGGATGACGACCTGTTT
GCGGAGCTGGGCATCGAGGCGCGGCCCGTGTTCCGGCCGCCGCCTGTGTC
AGCGCTCCGCGCACCGACGACGAGCCGCGTCTCGTCGCTCGCGGCGCTGT
CGCCGGAGCCCGGCGGCGGCGCGGGCGGGGAGTGGGACGACGGCCTGGAC
GATCTGGACACCTGAGCGACTACGTAGTGTGTGTAGGCAGGAGTGTCAGA
AAGCGGCGGCAGTTGGGGACATGATGGAAGGGGC

Coding sequence (CDS) from alignment at Contig_179:262132..264565+

>mRNA_15406 ID=mRNA_15406|Name=jgi.p|Trimin1|353727|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1194bp|location=Sequence derived from alignment at Contig_179:262132..264565+ (Tribonema minus UTEX_B_3156 )
ATGATACGGCAGCCGGAAGTTTGCCAGAGCGGCACCGCCGATGCCGGTGT
AGACGCCGTCTCAGTGCCTCCCGAAACAGAAGAGGCGGGGTCCAAGGAGC
AGCAGCAGCATCAGCAGCAGCAGCAGCAGCAGGGAGCTGCGCACCAGCAG
CAGACGTCCGCCGCACCGGAGGTGCCTGAGAAAAAACCCGTGCAGACCAC
CAAGCCCGCTGCTGTTGCATGTGACCCTGGCACAACCTGCAACGAGCACG
GACGCTGTGAGCAGGATGGCAGCTGCAAGTGCGACAATCCCTGGACAGGC
GCGGACTGCAGTCAGGACCCATGCGCTGAGCGCAGCTCCTCCTGCGGCGC
CTGCAAGGACGCGGCAGTGCTCGGCGGCCTCAGCTGCATGTGGGACGCGG
AGTCCGCCACCTGCTTCGCCATAGCCCTCAACCCGGAAACCGGCAAGCCC
CCGCCCTTTGAGTGCCCCGCGGCTGCGCCGGGGGGCCCGTTTGCGCTCGT
CGCGCTGCTCGTCGCCGCGGCCGGCGGCGCGTACTGCTGGCTCAAGCGGC
GGCGGCGGCGCGCCGGCGGCGGCGGCGGCGACAGCGCCCCCACGGCGCGC
TACACGCCCGTGCCGCAGGCAGACAGCGGCGGCGTGCACGCGGCGGCAGC
GGCGGCCGACGGCTGGGAGGACTGGGAGAGCGACGGCGGCGGCGAGGTGG
AGCTGGGAGTGCGGAGGGGAGGGGGGGGGCCTGGCACGCCGGCGCAGGGG
GGGGGGGCGCCGAGGAGCAGCACGGACGCGGGCATGAAGGCGGCGATAGC
GGCGTCGCTGCACGACGCGCCGCCGCAGGCGCTACCGCTACCGCAGCGGC
AGCACAGCAACGGCAGCACCGGCGACGCGGGCGCGGCGCCGCTGAAGCGC
GGGCACGCGCCGATGCCGCTGCGCGGCGGCGGCGCGGCGGCGGCGACGGG
CGCTCCGCGCAGCGGCGCTACCGCGGAGCCGCGGCGGTCCAGCAGTGAGC
CCGCGCCAACGGAGGATGACGACCTGTTTGCGGAGCTGGGCATCGAGGCG
CGGCCCGTGTTCCGGCCGCCGCCTGTGTCAGCGCTCCGCGCACCGACGAC
GAGCCGCGTCTCGTCGCTCGCGGCGCTGTCGCCGGAGCCCGGCGGCGGCG
CGGGCGGGGAGTGGGACGACGGCCTGGACGATCTGGACACCTGA