mRNA_15380 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|178923
Unique Name	mRNA_15380
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|178923 vs. uniprot
Match: A0A835ZEL5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEL5_9STRA)

HSP 1 Score: 272 bits (696), Expect = 1.040e-91
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1

Query:    1 MDTVREVRLLGARGPATHAEFVISRFRLLVRVLLTARPSAGTVEFQLDPTAAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACERVQAARDREAARXXXXXXXXXXXXXXXXXPANAVVARRRSGGGNAA 486
            MDTVREVRLLGARGPATHAEFVISRFRLLVRVLLTARPSAGTVEFQLDPTAAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACERVQAARDREAARXXXXXXXXXXXXXXXXXPANAVVARRRSGGGNAA
Sbjct:    1 MDTVREVRLLGARGPATHAEFVISRFRLLVRVLLTARPSAGTVEFQLDPTAAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACERVQAARDREAARXXXXXXXXXXXXXXXXXPANAVVARRRSGGGNAA 162

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BLAST of jgi.p|Trimin1|178923 vs. uniprot
Match: A0A835ZLE1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE1_9STRA)

HSP 1 Score: 158 bits (399), Expect = 1.220e-45
Identity = 82/130 (63.08%), Postives = 98/130 (75.38%), Query Frame = 1

Query:    1 MDTVREVRLLGARGPATHAEFVISRFRLLVRVLLTARPSAGTVEFQLDPT--AAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACERVQAARDREAAR 384
            +DTVRE R+LG RG  T AEF+ISRF+L VRVLL + P+A TVEF+LDP   AAG  +  +ARG+WYVE  P+ R G  R+WLVASL V   VPGFLVDYAAARALPRA+ W+KP CERVQ + +RE  R
Sbjct:   76 IDTVREARILGQRGGVTKAEFLISRFKLRVRVLLKSNPAASTVEFELDPDCKAAGKSVLNDARGIWYVERPPDCRPGHCRIWLVASLVVSGLVPGFLVDYAAARALPRASTWLKPTCERVQRSHEREGRR 205

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BLAST of jgi.p|Trimin1|178923 vs. uniprot
Match: A0A7S4HBJ1_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4HBJ1_GUITH)

HSP 1 Score: 102 bits (253), Expect = 2.770e-24
Identity = 58/127 (45.67%), Postives = 77/127 (60.63%), Query Frame = 1

Query:    7 TVREVRLL-GARGPAT-HAEFVISRFRLLVRVLLTARPSAGTVEFQLDPTAAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACERVQAARDREAA 381
            TVRE  ++ G R      A F +SRFRL V   L+       +EFQLD +  G+  F EARG W++E  PE   G +RVWL A +R    +P F+VDYAA+RALPRAT+W+KP  E + A  D+ A+
Sbjct:   11 TVREATIIPGTRSSVRCKARFKLSRFRLEVTADLSLNKFRNMLEFQLDRSGMGSSAFDEARGFWFLEQCPEREEGWTRVWLSAKVRCSPLLPPFIVDYAASRALPRATSWLKPVIEPIAAGLDKTAS 137

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BLAST of jgi.p|Trimin1|178923 vs. uniprot
Match: A0A6S9HUN1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HUN1_HETAK)

HSP 1 Score: 104 bits (259), Expect = 4.180e-24
Identity = 55/129 (42.64%), Postives = 76/129 (58.91%), Query Frame = 1

Query:    1 MDTVREVRLLGARGPATHAEFVISRFRLLVRVLLTARPSAGTVEFQLDPTA-AGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACERVQAARDREAAR 384
            + T+R+  +  +   AT AEF+ISRFR  VR ++   P A  + F LDP      G+FK A G W+ EPAP   A  +RVW+  ++ V RAVPGF+VD  A +ALP+++ WVKP  E  +  R   A R
Sbjct:  161 ISTIRDAIVFSSSPQATKAEFMISRFRFPVRAIMRYEPEASRLAFDLDPDCKVPPGVFKSAAGFWFAEPAPGREATHTRVWIAGAVEVNRAVPGFVVDLGAQKALPKSSNWVKPVMEAEERRRQAAARR 289

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BLAST of jgi.p|Trimin1|178923 vs. uniprot
Match: A0A7R9WQE8_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQE8_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.410e-23
Identity = 53/116 (45.69%), Postives = 73/116 (62.93%), Query Frame = 1

Query:    7 TVREVRLLGARGPATHAEFVISRFRLLVRVL--LTARPSAGTVEFQLDPTAAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACE 348
            T RE R  G     T A FV+S+FRL +  +   T  P    +EF LDP+     + K A+G WY E APEGR G +RV+L+  +++ RA+P F+VDYAA RA+PRAT+W++P  E
Sbjct:   27 TGRETRHYGTPS-VTRAAFVLSKFRLNIAAIHTYTPHPDGDYMEFTLDPSCTNM-VLKGAKGTWYTEEAPEGREGFTRVYLLCEVQISRALPSFIVDYAADRAMPRATSWLRPQVE 140

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BLAST of jgi.p|Trimin1|178923 vs. uniprot
Match: A0A7S4M0K0_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4M0K0_GUITH)

HSP 1 Score: 102 bits (253), Expect = 7.190e-23
Identity = 58/127 (45.67%), Postives = 77/127 (60.63%), Query Frame = 1

Query:    7 TVREVRLL-GARGPAT-HAEFVISRFRLLVRVLLTARPSAGTVEFQLDPTAAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACERVQAARDREAA 381
            TVRE  ++ G R      A F +SRFRL V   L+       +EFQLD +  G+  F EARG W++E  PE   G +RVWL A +R    +P F+VDYAA+RALPRAT+W+KP  E + A  D+ A+
Sbjct:  175 TVREATIIPGTRSSVRCKARFKLSRFRLEVTADLSLNKFRNMLEFQLDRSGMGSSAFDEARGFWFLEQCPEREEGWTRVWLSAKVRCSPLLPPFIVDYAASRALPRATSWLKPVIEPIAAGLDKTAS 301

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BLAST of jgi.p|Trimin1|178923 vs. uniprot
Match: A0A7S0H7N8_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0H7N8_9CRYP)

HSP 1 Score: 100 bits (249), Expect = 2.230e-22
Identity = 57/127 (44.88%), Postives = 77/127 (60.63%), Query Frame = 1

Query:    7 TVREVRLL-GARGPAT-HAEFVISRFRLLVRVLLTARPSAGTVEFQLDPTAAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACERVQAARDREAA 381
            TVRE  ++ G R      A F +SRFRL V   L+       +EFQLD +  G+  F EARG W++E  PE   G +RVWL A +R    +P F+VDYAA+RALPRAT+W++P  E + A  D+ A+
Sbjct:  161 TVREALIIPGTRSSVRCKARFKLSRFRLEVTADLSLNKFRNMLEFQLDRSGMGSSAFDEARGFWFLEQCPEREEGWTRVWLSAKVRCSPLLPPFIVDYAASRALPRATSWLRPVIEPIAAGLDKTAS 287

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BLAST of jgi.p|Trimin1|178923 vs. uniprot
Match: D7FJT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJT4_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 2.530e-22
Identity = 56/123 (45.53%), Postives = 78/123 (63.41%), Query Frame = 1

Query:    1 MDTVREVRLL--GARGPATHAEFVISRFRLLVRVLLTARPSAGTVEFQLDP--TAAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACERVQ 357
            +DTVRE  +   G    +     ++SRF+L +RV+++       V+F+LDP  T AG  + +EA G +YVE  P+ R G SRVW++A + V R VPG +VDYAA RALPRA+ W+KP CE  Q
Sbjct:  297 IDTVRECEVFPQGETADSRKVGVMVSRFKLHIRVVMSLLRERNMVQFELDPDCTKAGRAVLREATGFFYVESPPD-RPGFSRVWMLAKVDVNRFVPGAIVDYAAGRALPRASNWIKPTCEAAQ 418

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BLAST of jgi.p|Trimin1|178923 vs. uniprot
Match: A0A1E7ESF0_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ESF0_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.180e-21
Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = 1

Query:    7 TVREVRLLGARGPATHAEFVISRFRLLVRVL--LTARPSAGTVEFQLDPTAAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACE 348
            T RE R  G     T A F++S+FRL +  +   T  P+   +EF LDP+     + K A+G WY E  P+GR G +RV+L+ASL++ RA+P F+VDYAA RA+PRAT W+KP  E
Sbjct:  291 TGRETRHYGTPS-ITRASFILSKFRLNIAAIHKYTPHPNGDYMEFTLDPSCTNV-VLKGAKGTWYTEENPDGRKGFTRVYLLASLQISRALPKFIVDYAAERAMPRATNWLKPEVE 404

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BLAST of jgi.p|Trimin1|178923 vs. uniprot
Match: K0QZX7_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZX7_THAOC)

HSP 1 Score: 89.4 bits (220), Expect = 4.410e-20
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 1

Query:   55 AEFVISRFRLLVRVLLTARP--SAGTVEFQLDPTAAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACE 348
            A+F +S+FRL +  L   RP      + F LDP +    L K A+G+WY +  PEG+ G +RVWL+  LRV + +P ++VDYAA+RA+PRAT W+KP  E
Sbjct:    3 AQFSLSKFRLKIAALHKYRPHPKGDYMIFTLDPASRNMAL-KYAKGIWYTQSNPEGKEGYTRVWLLCELRVSKLLPQWIVDYAASRAMPRATTWLKPQTE 101

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|178923 vs. uniprot

BLAST of jgi.p|Trimin1|178923 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835ZEL5_9STRA	1.040e-91	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835ZLE1_9STRA	1.220e-45	63.08	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S4HBJ1_GUITH	2.770e-24	45.67	Hypothetical protein n=1 Tax=Guillardia theta TaxI...	[more]
A0A6S9HUN1_HETAK	4.180e-24	42.64	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7R9WQE8_9STRA	2.410e-23	45.69	Hypothetical protein n=2 Tax=Craspedostauros austr...	[more]
A0A7S4M0K0_GUITH	7.190e-23	45.67	Hypothetical protein n=1 Tax=Guillardia theta TaxI...	[more]
A0A7S0H7N8_9CRYP	2.230e-22	44.88	Hypothetical protein n=1 Tax=Hanusia phi TaxID=303...	[more]
D7FJT4_ECTSI	2.530e-22	45.53	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A1E7ESF0_9STRA	1.180e-21	46.55	Uncharacterized protein n=1 Tax=Fragilariopsis cyl...	[more]
K0QZX7_THAOC	4.410e-20	46.00	Uncharacterized protein (Fragment) n=1 Tax=Thalass...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_179	contig	Contig_179:93604..94749 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|178923\|e_gw1.179.26.1
Max annot lvl	2759\|Eukaryota
EggNOG OGs	2E0V1@1\|root,2S88H@2759\|Eukaryota
Evalue	4.15e-23
Seed ortholog	2880.D7FJT4
Hectar predicted targeting category	other localisation
TranscriptId	179245
Track	FilteredModels1
ProteinId	178923

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|178923	gene_15380	Tribonema minus UTEX_B_3156	gene	Contig_179 93604..94749 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|178923	Trimin1\|178923\|e_gw1.179.26.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_179 93604..94749 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_15380_2	exon_15380_2	Tribonema minus UTEX_B_3156	exon	Contig_179 93604..93915 -
exon_15380_1	exon_15380_1	Tribonema minus UTEX_B_3156	exon	Contig_179 94573..94749 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_15380	CDS_15380	Tribonema minus UTEX_B_3156	CDS	Contig_179 94573..94749 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_179:93604..94749-
coding sequence from alignment at Contig_179:93604..94749-

spliced messenger RNA

>mRNA_15380 ID=mRNA_15380|Name=jgi.p|Trimin1|178923|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=489bp|location=Sequence derived from alignment at Contig_179:93604..94749- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACACGGTGCGCGAGGTGCGGCTGCTCGGCGCGCGCGGTCCCGCCAC
CCACGCGGAGTTTGTCATCAGCCGCTTCCGCCTGCTGGTGCGCGTGCTGC
TCACGGCGCGCCCGTCCGCGGGCACGGTCGAGTTTCAGCTCGACCCCACA
GCGGCGGGCGCGGGGCTGTTCAAAGAGGCGCGCGGCGTCTGGTACGTCGA
GCCCGCGCCCGAGGGGCGCGCCGGCGTCTCGCGCGTCTGGCTCGTGGCGA
GCCTGCGCGTGCAGCGCGCCGTGCCGGGCTTCCTCGTCGATTACGCCGCC
GCGCGAGCCCTGCCGCGTGCGACGGCGTGGGTCAAGCCGGCGTGCGAGCG
CGTGCAGGCGGCGCGCGACCGCGAGGCGGCGCGGCGCGCGGCGGCGGCGG
CAGCGGCGGCGGCGACGGCAGGGGCGCACGGCGCGCCGGCCAACGCCGTC
GTGGCGCGCAGGCGAAGCGGCGGCGGCAATGCTGCATGA

protein sequence of jgi.p|Trimin1|178923

>Trimin1|178923|e_gw1.179.26.1 ID=Trimin1|178923|e_gw1.179.26.1|Name=jgi.p|Trimin1|178923|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=163bp
MDTVREVRLLGARGPATHAEFVISRFRLLVRVLLTARPSAGTVEFQLDPT
AAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAA
ARALPRATAWVKPACERVQAARDREAARRAAAAAAAAATAGAHGAPANAV
VARRRSGGGNAA*

mRNA from alignment at Contig_179:93604..94749-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_15380 ID=mRNA_15380|Name=jgi.p|Trimin1|178923|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1146bp|location=Sequence derived from alignment at Contig_179:93604..94749- (Tribonema minus UTEX_B_3156 )
ATGGACACGGTGCGCGAGGTGCGGCTGCTCGGCGCGCGCGGTCCCGCCAC
CCACGCGGAGTTTGTCATCAGCCGCTTCCGCCTGCTGGTGCGCGTGCTGC
TCACGGCGCGCCCGTCCGCGGGCACGGTCGAGTTTCAGCTCGACCCCACA
GCGGCGGGCGCGGGGCTGTTCAAAGAGGTGCGTCAACCGCGCTTCGCGTA
CTTCAACTCAGAGCAGGAGTTGGGTGGGTGTCGCGTAGGTAGTTGCTTCT
ATCACGAGCGTCGACGCAACGTGCAGGGCACTCTTCAACTCAGAGTTGAA
GTTAGGTGGTGTCGCACAGGTAGTTGCTTTCTATCACGCGCATGCTGCGC
ACGCGCTTTTGGCGCAGTCGAGCAATGCCGCTGCCGGCCGCGCGTCGCGG
CCGGTGAGTGACGCTCTCCAGTGGAGGCGCGTGCATCATCTACTCGTTTC
CCTGACACTCACATCAAACTTCACCTGGACGACCTTGCAGCGCCCCGTGA
GAGCTCATCATGGCGCAGCCGCCTGCTGGCGTGGCCATCGCCTCCGCAGT
CCCCGCTGATCTAAGAGCAGTTGGAGAGATTAACTTCATCATGCCAGGCC
GGGGGCAGACCCCTGGAACGCCCAGTCTGTAACGCCCAGTCCATGGACCC
CTGTGGATCTGCAGATGGCACTTGCGCCGTCGCATGCGCGACACGCCACG
CGGCGGGCGCCGCCTGCGCGTGCTCGTGCACGTCCGCGGCGCCATCGCCG
CGCGCTGCGCGGTGCGCGCCACGCCACACACGCACCACCCCCCGCTCAAC
CCCCCCCCTCCTCAACCCCCCCCCACCCCTGCAGGCGCGCGGCGTCTGGT
ACGTCGAGCCCGCGCCCGAGGGGCGCGCCGGCGTCTCGCGCGTCTGGCTC
GTGGCGAGCCTGCGCGTGCAGCGCGCCGTGCCGGGCTTCCTCGTCGATTA
CGCCGCCGCGCGAGCCCTGCCGCGTGCGACGGCGTGGGTCAAGCCGGCGT
GCGAGCGCGTGCAGGCGGCGCGCGACCGCGAGGCGGCGCGGCGCGCGGCG
GCGGCGGCAGCGGCGGCGGCGACGGCAGGGGCGCACGGCGCGCCGGCCAA
CGCCGTCGTGGCGCGCAGGCGAAGCGGCGGCGGCAATGCTGCATGA

Coding sequence (CDS) from alignment at Contig_179:93604..94749-

>mRNA_15380 ID=mRNA_15380|Name=jgi.p|Trimin1|178923|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=489bp|location=Sequence derived from alignment at Contig_179:93604..94749- (Tribonema minus UTEX_B_3156 )
ATGGACACGGTGCGCGAGGTGCGGCTGCTCGGCGCGCGCGGTCCCGCCAC
CCACGCGGAGTTTGTCATCAGCCGCTTCCGCCTGCTGGTGCGCGTGCTGC
TCACGGCGCGCCCGTCCGCGGGCACGGTCGAGTTTCAGCTCGACCCCACA
GCGGCGGGCGCGGGGCTGTTCAAAGAGGCGCGCGGCGTCTGGTACGTCGA
GCCCGCGCCCGAGGGGCGCGCCGGCGTCTCGCGCGTCTGGCTCGTGGCGA
GCCTGCGCGTGCAGCGCGCCGTGCCGGGCTTCCTCGTCGATTACGCCGCC
GCGCGAGCCCTGCCGCGTGCGACGGCGTGGGTCAAGCCGGCGTGCGAGCG
CGTGCAGGCGGCGCGCGACCGCGAGGCGGCGCGGCGCGCGGCGGCGGCGG
CAGCGGCGGCGGCGACGGCAGGGGCGCACGGCGCGCCGGCCAACGCCGTC
GTGGCGCGCAGGCGAAGCGGCGGCGGCAATGCTGCATGA