mRNA_15347 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353571
Unique NamemRNA_15347
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|353571 vs. uniprot
Match: A0A836CLK2_9STRA (ULP_PROTEASE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLK2_9STRA)

HSP 1 Score: 983 bits (2542), Expect = 0.000e+0
Identity = 495/495 (100.00%), Postives = 495/495 (100.00%), Query Frame = 2 
Query:  203 MALGRSEHVYAETACSAHNSSAVTPSGSNGEGYRPPQPRDLDAVSSLPPDLVPRALTPEERGALHAAFARPDTQPVVSIDGNSVSADRFFAGLRPGGWLNDEVINCWLATLRLRFPRTVFANTQFYANLMAGYPSIRAGVCYCFKHVVKWCEGRSGEKSGLARLWRDPTVSKFVVPVHMSGNHWVLVAADFNTHTVTEYDSLGAGEAEGGGGEDGAGMEDENGASLSRSYHVLMFLEDLSFWTAGDDSAQLPHWWELASAPEAPRHPDTCSCGVFAAFAAAAVAAAPRGASPDFLSYSIPHARGQEWRRAQACRAALMRETIARVLVSDSSREEERKAALAAQATARTTTLGDPPDSGHARMSYAINSSISSSSIKLDVRLAAPFSRGTVVKHLADRLGCEAWFHQGKSRGFLLGGSNDAVPTVSGSADKLLELLSALLSSGPAGFSQDMRMSLRVTNMSPSMLCRLLNLVPGAVAAGQGAVSHSAQQTLSHFNI 1687
            MALGRSEHVYAETACSAHNSSAVTPSGSNGEGYRPPQPRDLDAVSSLPPDLVPRALTPEERGALHAAFARPDTQPVVSIDGNSVSADRFFAGLRPGGWLNDEVINCWLATLRLRFPRTVFANTQFYANLMAGYPSIRAGVCYCFKHVVKWCEGRSGEKSGLARLWRDPTVSKFVVPVHMSGNHWVLVAADFNTHTVTEYDSLGAGEAEGGGGEDGAGMEDENGASLSRSYHVLMFLEDLSFWTAGDDSAQLPHWWELASAPEAPRHPDTCSCGVFAAFAAAAVAAAPRGASPDFLSYSIPHARGQEWRRAQACRAALMRETIARVLVSDSSREEERKAALAAQATARTTTLGDPPDSGHARMSYAINSSISSSSIKLDVRLAAPFSRGTVVKHLADRLGCEAWFHQGKSRGFLLGGSNDAVPTVSGSADKLLELLSALLSSGPAGFSQDMRMSLRVTNMSPSMLCRLLNLVPGAVAAGQGAVSHSAQQTLSHFNI
Sbjct:    1 MALGRSEHVYAETACSAHNSSAVTPSGSNGEGYRPPQPRDLDAVSSLPPDLVPRALTPEERGALHAAFARPDTQPVVSIDGNSVSADRFFAGLRPGGWLNDEVINCWLATLRLRFPRTVFANTQFYANLMAGYPSIRAGVCYCFKHVVKWCEGRSGEKSGLARLWRDPTVSKFVVPVHMSGNHWVLVAADFNTHTVTEYDSLGAGEAEGGGGEDGAGMEDENGASLSRSYHVLMFLEDLSFWTAGDDSAQLPHWWELASAPEAPRHPDTCSCGVFAAFAAAAVAAAPRGASPDFLSYSIPHARGQEWRRAQACRAALMRETIARVLVSDSSREEERKAALAAQATARTTTLGDPPDSGHARMSYAINSSISSSSIKLDVRLAAPFSRGTVVKHLADRLGCEAWFHQGKSRGFLLGGSNDAVPTVSGSADKLLELLSALLSSGPAGFSQDMRMSLRVTNMSPSMLCRLLNLVPGAVAAGQGAVSHSAQQTLSHFNI 495
[Close]
BLAST of jgi.p|Trimin1|353571 vs. uniprot
Match: A0A835Z1W2_9STRA (ULP_PROTEASE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1W2_9STRA)

HSP 1 Score: 362 bits (928), Expect = 3.550e-114
Identity = 202/325 (62.15%), Postives = 227/325 (69.85%), Query Frame = 2 
Query:  311 QPRDLDAVSSLPPDLVPRALTPEERGALHAAFARPDTQ-PVVSIDGNSVSADRFFAGLRPGGWLNDEVINCWLATLRLRFPRTVFANTQFYANLMAGYPSIRAG--VCYCFKHVVKWCEGRSGEKSGLARLWRDPTVSKFVVPVHMSGNHWVLVAADFNTHTVTEYDSLGAGEAEGGGGEDGAGMEDENGASLSRSYHVLMFLEDLSFWTAGDDSAQLPHWWELA--SAPEAPRHPDTCSCGVFAAFAAAAVAAAPRGASPDFLSYSIPHARGQEWRRAQACRAALMRETIARVLVSDSSREE-ERKAALAAQATARTTTLGDPP 1267
            QP+D D + SLPPDL+PR LTPEERGAL A FA+ DT  P  S+ G  VS  R F+ LRPGGWLNDEV+NCWLATLR RFP TVFANTQFY  LMAG P I  G  V Y FK+V KWCEGR GE+SGLARLWRDP V++FVVPVH  GNHWVLVAAD NTH V+EYDS+G GEA+GGG E+G       GA   +                 D +A  P  W +   +  EAPR PD CSCGVFAAFAAAAVAAAP+GA PDFLSYSIPHA+G  WR AQ  RAALMRET+ARVL+++SSREE ER A     ATA    LG  P
Sbjct:   23 QPQDPDPIGSLPPDLLPRRLTPEERGALDAIFAQEDTDAPAASVGGTPVSG-RSFSRLRPGGWLNDEVLNCWLATLRPRFPGTVFANTQFYTTLMAGIPHIPMGLGVGYHFKNVEKWCEGRRGEESGLARLWRDPAVTRFVVPVHARGNHWVLVAADLNTHVVSEYDSMGTGEAQGGGVEEG-------GAERIKE----------------DRTALPPGRWGVGRVTVSEAPRQPDACSCGVFAAFAAAAVAAAPQGAPPDFLSYSIPHAQGPAWRSAQTLRAALMRETVARVLLAESSREEAERTAEQTELATAAEVLLGMAP 323
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BLAST of jgi.p|Trimin1|353571 vs. uniprot
Match: A0A836CJQ5_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ5_9STRA)

HSP 1 Score: 165 bits (417), Expect = 4.180e-42
Identity = 93/140 (66.43%), Postives = 103/140 (73.57%), Query Frame = 2 
Query: 1241 RTTTLGDPPDSGHARMSYAINSSISSSSIKLDVRLAAPFSRGTVVKHLADRLGCEAWFHQGKSRGFLLGGSNDAVPTVSGSADKLLELLSALLSSGPAGFSQDMRMSLRVTNMSPSMLCRLLNLVPGAVAAGQGAVSHSA 1660
            RTTTLG+PPD GHAR SYA  SSISSS IKLDVRL  P  RG VV+ LA++LGCEAWFH+  S GF+ GGSNDAVPTVSG ADKLLELLSAL  SGPAGF+QDMR SLRVTN+    L R L+   G V    G  +  A
Sbjct:  190 RTTTLGNPPDEGHARTSYACKSSISSSGIKLDVRLVTPIFRGAVVRDLAEKLGCEAWFHKSTSLGFMPGGSNDAVPTVSGCADKLLELLSALPPSGPAGFAQDMRTSLRVTNLRS--LGRELHRGEGEVLCNTGYANQPA 327
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BLAST of jgi.p|Trimin1|353571 vs. uniprot
Match: A0A7S2NR69_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NR69_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 2.050e-10
Identity = 60/205 (29.27%), Postives = 81/205 (39.51%), Query Frame = 2 
Query:  479 LRPGGWLNDEVINCWLATLRLR------------------FPRTVFANTQFYANLMAGYPSIRAGVCYCFKHVVKWCEGRSGEKSGLARLWRDPTVSKFVVPVHMSGNHWVLVAADFNTHTVTEYDSLGAGEAEGGGGEDGAGMEDENGASLSRSYHVLMFLEDLSFWTAGDDSAQLPH----WWELASAPEAPRHPDTCSCGVF 1027
            LRPG WLNDEVIN +   L +R                   PR  F  T FY  L  G      G  Y +K V +W +           +++   V   +VP+H  GNHW L   +F       YDSL  GE                G  L+   H+  +L D S     +D  Q+P+    W ++A   + PR  +   CGVF
Sbjct:   14 LRPGCWLNDEVINLFFKLLDVREKDAVAAKAAGLTDAFTQAPRCHFCQTNFYTKLSGG------GGSYDYKSVKRWTKKID--------IFQKELV---IVPIHCHGNHWTLAVINFKLKRFEYYDSLFGGE----------------GMILT---HLRRWLTDES-----NDKKQVPYDTSDWTDIAFKKDMPRQKNGSDCGVF 177
[Close]
BLAST of jgi.p|Trimin1|353571 vs. uniprot
Match: A0A0A9MLB5_ARUDO (ULP_PROTEASE domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9MLB5_ARUDO)

HSP 1 Score: 70.9 bits (172), Expect = 2.120e-9
Identity = 56/160 (35.00%), Postives = 75/160 (46.88%), Query Frame = 2 
Query:  362 RALTPEERGALHAAF--ARPDTQPVVSIDGNSVSADRF-FAGLRPGGWLNDEVINCWLATLRLR-------FPRTVFANTQFYANLMAGYPSIRAGVCYCFKHVVKWCEGRSGEKSGLARLWRDPTVSKFVVPVHMSGNHWVLVAADFNTHTVTEYDSLG 811
            + LT EE  A+H     + P ++ +V  + +++   +  F  LRPGGWLNDEVIN +L  L+ R       F +  F NT FY  L  G    + G  Y +K V +W   R   K G   +  D    K  VPVH    HW L   +   HT    DSLG
Sbjct:  180 KPLTDEEENAVHDCLYSSGPSSKVLVLHESSNIEVTKEKFRCLRPGGWLNDEVINLYLELLKEREKREPKKFLKCHFFNTFFYKKLACG----KLG--YDYKSVKRWTTHR---KLGYELIECD----KIFVPVHKD-IHWCLAVINMKEHTFQYLDSLG 325
[Close]
BLAST of jgi.p|Trimin1|353571 vs. uniprot
Match: A0A5J9WFX6_9POAL (ULP_PROTEASE domain-containing protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9WFX6_9POAL)

HSP 1 Score: 68.9 bits (167), Expect = 8.950e-9
Identity = 59/175 (33.71%), Postives = 78/175 (44.57%), Query Frame = 2 
Query:  317 RDLDAVSSLPPDLVPRALTPEERGALH-AAFAR-PDTQPVVSIDGNSVSADRF-FAGLRPGGWLNDEVINCWLATLR-------LRFPRTVFANTQFYANLMAGYPSIRAGVCYCFKHVVKWCEGRSGEKSGLARLWRDPTVSKFVVPVHMSGNHWVLVAADFNTHTVTEYDSLG 811
            R LD         + + LT EE   +H   F R P ++ +VS + +++   +  F  LRPGGWLNDEVIN +L  L+        RF +  F NT FY  L  G         Y +K V +W   R   K G   +  D    K  VPVH    HW L   +   +T    DSLG
Sbjct:  165 RKLDQAPKEDLSELFKPLTDEEEDEVHDCLFGRGPSSKVLVSHESSNIEISKEKFRCLRPGGWLNDEVINLYLELLKEREKREPKRFLKCHFFNTFFYKKLACGKNG------YDYKSVKRWTTQR---KLGYELIDCD----KIFVPVHKD-IHWCLAIINMKKNTFQYLDSLG 325
[Close]
BLAST of jgi.p|Trimin1|353571 vs. uniprot
Match: A0A444ZG34_ARAHY (ULP_PROTEASE domain-containing protein n=13 Tax=Arachis TaxID=3817 RepID=A0A444ZG34_ARAHY)

HSP 1 Score: 69.3 bits (168), Expect = 9.560e-9
Identity = 72/252 (28.57%), Postives = 107/252 (42.46%), Query Frame = 2 
Query:  296 GYRPPQPRDLDAVSSLPPDLVPRALTPEERGALHAAFARPDTQPVVSIDGNSVS-ADRFFAGLRPGGWLNDEVINCWLATLR-------LRFPRTVFANTQFYANLMAGYPSIRAGVCYCFKHVVKWCEGRSGEKSGLARLWRDPTVSKFVVPVHMSGNHWVLVAADFNTHTVTEYDSLGAGEAEGGGGEDGAGMEDENGASLSRSYHVLMFLEDLSFWTAGDDSAQLPHWWELASAPEAPRHPDTCSCGVF 1027
            G+   +P+  + V  +P +    ALT EE   + +AF     + +V+ D +++  +   F  LRPG WLNDEVIN +L  L+        RF +  F NT FY  L++G    R+G  Y FK V +W   R   K G   +  D    K  VP+H    HW L   +         DSL              GM+++    L+R Y     ++++   T  D        WE     + P   +   CGVF
Sbjct:  286 GFELLRPKKAEPVEEVPREPF-LALTEEEEDEVASAFLANRRKILVTHDESNIEISGEKFQCLRPGAWLNDEVINLYLELLKEREKRDPQRFLKCHFFNTFFYKKLISG----RSG--YDFKSVRRWTSQR---KLGYGLIECD----KIFVPIHKE-IHWCLAIINKKDQKFQYLDSL-------------KGMDNQVLKVLARYY-----VDEVKDKTGKDLDVSS---WEKEFVEDLPEQENGYDCGVF 501
[Close]
BLAST of jgi.p|Trimin1|353571 vs. uniprot
Match: A0A444ZG71_ARAHY (ULP_PROTEASE domain-containing protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444ZG71_ARAHY)

HSP 1 Score: 67.8 bits (164), Expect = 2.260e-8
Identity = 58/179 (32.40%), Postives = 83/179 (46.37%), Query Frame = 2 
Query:  296 GYRPPQPRDLDAVSSLPPDLVPRALTPEERGALHAAFARPDTQPVVSIDGNSVS-ADRFFAGLRPGGWLNDEVINCWLATLR-------LRFPRTVFANTQFYANLMAGYPSIRAGVCYCFKHVVKWCEGRSGEKSGLARLWRDPTVSKFVVPVHMSGNHWVLVAADFNTHTVTEYDSL 808
            G+   +P+  + V  +P +    ALT EE   + +AF     + +V+ D +++  +   F  LRPG WLNDEVIN +L  L+        RF +  F NT FY  L++G    R+G  Y FK V +W   R   K G   +  D    K  VP+H    HW L   +         DSL
Sbjct:  243 GFELLRPKKAEPVEEVPREPF-LALTEEEEDEVASAFLANRRKILVTHDESNIEISGEKFQCLRPGAWLNDEVINLYLELLKEREKRDPQRFLKCHFFNTFFYKKLISG----RSG--YDFKSVRRWTSQR---KLGYGLIECD----KIFVPIHKE-IHWCLAIINKKDQKFQYLDSL 406
[Close]
BLAST of jgi.p|Trimin1|353571 vs. uniprot
Match: A0A2E4IZM5_9BACT (ULP_PROTEASE domain-containing protein n=1 Tax=Opitutaceae bacterium TaxID=2006848 RepID=A0A2E4IZM5_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 1.780e-7
Identity = 57/181 (31.49%), Postives = 80/181 (44.20%), Query Frame = 2 
Query:  485 PGGWLNDEVINCWLATLRLRFPRTVFANTQFYANLMAGYPSIRAGVCYCFKHVVKWCEGRSGEKSGLARLWRDPTVSKFVVPVHMSGNHWVLVAADFNTHTVTEYDSLGAGEAEGGGGEDGAGMEDENGASLSRSYHVLMFLEDLSFWTAGDDSAQLPHWWELASAPEAPRHPDTCSCGVF 1027
            P  WLNDE+IN +LA +  R  + VF +T F A L            Y +++V +W +     K G   L RD    K  +PV+ + +HWVLV  D    TV+ YDSLG               +DE         +V+ +LED+S    G  + +    W      E PR  +   CGVF
Sbjct:  117 PKTWLNDEIINFYLALVAER-TKKVFFSTYFIAKLYKD----NKDEYYMYENVKRWTD-----KLGYDILERD----KIFIPVNQNRDHWVLVIVDLPNTTVSYYDSLGE--------------KDETCTG-----NVVRWLEDVS---EGRGNKRDEGRWRKEYVSE-PRQDNCYDCGVF 260
[Close]
BLAST of jgi.p|Trimin1|353571 vs. uniprot
Match: A0A833QNP1_9POAL (Putative ubiquitin-like-specific protease 1B isoform X2 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QNP1_9POAL)

HSP 1 Score: 64.3 bits (155), Expect = 2.500e-7
Identity = 48/153 (31.37%), Postives = 71/153 (46.41%), Query Frame = 2 
Query:  377 EERGALHAAFARPDTQPVVSIDGNSVSADR-FFAGLRPGGWLNDEVINCWLATLRLR-------FPRTVFANTQFYANLMAGYPSIRAGVCYCFKHVVKWCEGRSGEKSGLARLWRDPTVSKFVVPVHMSGNHWVLVAADFNTHTVTEYDSLG 811
            +E    +A F R     +V+ + +++   +     LRPGGWLNDEVIN +L  L+ R       F +  F NT FY  L+ G         Y +K V +W    + +K G + +  D    K  VP+H  G HW L   +    ++   DSLG
Sbjct:  173 DEEEVDNALFGRDSHTILVTHESSNIEITKEIIRCLRPGGWLNDEVINLYLELLKERERRQPDRFLKCHFFNTFFYKKLIGGNDG------YDYKAVRRWT---TQKKLGYSLINCD----KIFVPIH-KGTHWCLAVINVKQKSLQYLDSLG 311
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353571 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLK2_9STRA0.000e+0100.00ULP_PROTEASE domain-containing protein n=1 Tax=Tri... [more]
A0A835Z1W2_9STRA3.550e-11462.15ULP_PROTEASE domain-containing protein n=1 Tax=Tri... [more]
A0A836CJQ5_9STRA4.180e-4266.43BTB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2NR69_9EUKA2.050e-1029.27Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A0A9MLB5_ARUDO2.120e-935.00ULP_PROTEASE domain-containing protein n=1 Tax=Aru... [more]
A0A5J9WFX6_9POAL8.950e-933.71ULP_PROTEASE domain-containing protein n=1 Tax=Era... [more]
A0A444ZG34_ARAHY9.560e-928.57ULP_PROTEASE domain-containing protein n=13 Tax=Ar... [more]
A0A444ZG71_ARAHY2.260e-832.40ULP_PROTEASE domain-containing protein n=1 Tax=Ara... [more]
A0A2E4IZM5_9BACT1.780e-731.49ULP_PROTEASE domain-containing protein n=1 Tax=Opi... [more]
A0A833QNP1_9POAL2.500e-731.37Putative ubiquitin-like-specific protease 1B isofo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_171contigContig_171:142559..147609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353571|estExt_Genemark1.C_Ctg_1710025
KEGG TC1.B.33
BRITEko00000,ko01000,ko01002,ko02000,ko03029,ko04121
KEGG koko:K07277,ko:K08592
EC3.4.22.68
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005911,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009506,GO:0009909,GO:0009911,GO:0009987,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0030054,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048518,GO:0048580,GO:0048582,GO:0048831,GO:0050789,GO:0050793,GO:0051094,GO:0051239,GO:0051240,GO:0055044,GO:0065007,GO:0070011,GO:0070122,GO:0070137,GO:0070138,GO:0070139,GO:0070140,GO:0070646,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:2000026,GO:2000241,GO:2000243
Descriptionprotein desumoylation
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5160@1|root,KOG0778@2759|Eukaryota
Evalue3.63e-08
Seed ortholog2880.D7FMM6
Hectar predicted targeting categoryother localisation
TranscriptId353893
TrackFilteredModels1
ProteinId353571
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353571gene_15347Tribonema minus UTEX_B_3156 geneContig_171 142559..147609 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353571Trimin1|353571|estExt_Genemark1.C_Ctg_1710025Tribonema minus UTEX_B_3156 polypeptideContig_171 142559..146150 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15347_4exon_15347_4Tribonema minus UTEX_B_3156 exonContig_171 142559..142608 -
exon_15347_3exon_15347_3Tribonema minus UTEX_B_3156 exonContig_171 143310..143709 -
exon_15347_2exon_15347_2Tribonema minus UTEX_B_3156 exonContig_171 145113..146158 -
exon_15347_1exon_15347_1Tribonema minus UTEX_B_3156 exonContig_171 147416..147609 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15347CDS_15347Tribonema minus UTEX_B_3156 CDSContig_171 145113..146150 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_15347UTR5_15347Tribonema minus UTEX_B_3156 five_prime_UTRContig_171 147416..147609 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15347 ID=mRNA_15347|Name=jgi.p|Trimin1|353571|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1690bp|location=Sequence derived from alignment at Contig_171:142559..147609- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAAATACAGGACATCCCAACACCTAGGCGTGCTGCTGTCCCGACCAGCAA
AGCGCCTGATCTTCGCACCAGGCGTACCACGTGAAGGGAGCAGGGGGTGC
GGGATGGAAGTTTAGCAGAGCCTGGTTCGTGCTGTTCAAGGCAGCAGTAG
TTAGGCGCATTTCTGGGGGAGCGCACAAGGGCGTGGCGTCGCAGGTGAGA
TTATGGCATTGGGAAGATCAGAGCATGTCTACGCAGAAACCGCGTGCAGC
GCGCACAACAGCAGCGCCGTGACGCCGAGCGGCAGCAACGGCGAAGGCTA
CCGCCCCCCGCAGCCACGGGATCTCGACGCCGTCAGCTCGCTCCCCCCGG
ACCTCGTGCCCCGCGCCCTCACGCCGGAGGAGAGGGGGGCCCTGCACGCA
GCGTTCGCACGGCCGGACACTCAGCCAGTCGTCTCCATAGACGGCAATTC
GGTCTCCGCCGACAGGTTCTTCGCCGGACTCCGCCCCGGGGGCTGGCTCA
ACGACGAGGTCATCAACTGCTGGCTGGCGACCTTGAGGCTCCGCTTCCCG
CGGACGGTGTTTGCCAACACGCAGTTCTACGCAAACCTGATGGCGGGCTA
TCCGAGTATCCGGGCGGGGGTGTGCTACTGTTTCAAACATGTGGTGAAGT
GGTGCGAGGGGCGCAGTGGAGAAAAGAGCGGCCTGGCAAGGCTGTGGCGG
GACCCGACGGTGTCGAAGTTCGTGGTCCCGGTGCACATGAGTGGGAACCA
CTGGGTGCTGGTGGCCGCGGACTTCAACACTCACACTGTCACCGAGTACG
ACTCACTGGGGGCAGGGGAGGCGGAGGGGGGGGGGGGCGAGGATGGGGCG
GGCATGGAGGATGAAAACGGGGCGAGTCTCTCCCGCTCCTATCACGTGCT
GATGTTCCTTGAAGACCTGTCCTTTTGGACTGCAGGGGACGATAGTGCCC
AGCTCCCACACTGGTGGGAACTTGCAAGTGCTCCAGAGGCCCCACGGCAT
CCTGACACGTGCAGCTGCGGGGTGTTTGCGGCATTCGCGGCTGCGGCGGT
CGCCGCAGCGCCGCGAGGCGCCTCCCCTGACTTCCTGTCCTACTCGATCC
CGCATGCCCGGGGACAAGAGTGGCGCAGGGCCCAGGCCTGTCGCGCGGCG
TTGATGCGGGAGACAATTGCCCGTGTTCTGGTCTCCGATTCCTCCCGGGA
GGAGGAGCGCAAGGCAGCACTGGCGGCGCAGGCGACAGCGCGCACCACCA
CACTCGGCGATCCCCCAGACTCGGGCCATGCACGCATGTCATACGCTATC
AACAGCAGCATCAGCAGCAGCAGCATCAAGCTAGATGTGCGCCTCGCTGC
GCCCTTCTCTAGAGGAACTGTTGTCAAACACCTGGCAGACCGACTGGGCT
GCGAGGCCTGGTTCCACCAGGGCAAATCCCGAGGATTCCTGCTGGGAGGC
TCCAACGACGCGGTGCCCACAGTCAGCGGCTCTGCAGACAAGCTGCTGGA
ACTGCTATCCGCGCTGCTATCCAGCGGGCCTGCAGGCTTTTCACAGGACA
TGAGGATGTCACTGCGTGTCACAAACATGAGCCCGAGCATGCTCTGCCGG
TTGCTCAATCTTGTGCCGGGAGCAGTGGCAGCGGGGCAAGGCGCGGTGAG
CCACAGTGCTCAGCAGACCTTGTCGCACTTCAACATATGA
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protein sequence of jgi.p|Trimin1|353571

>Trimin1|353571|estExt_Genemark1.C_Ctg_1710025 ID=Trimin1|353571|estExt_Genemark1.C_Ctg_1710025|Name=jgi.p|Trimin1|353571|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=496bp
MALGRSEHVYAETACSAHNSSAVTPSGSNGEGYRPPQPRDLDAVSSLPPD
LVPRALTPEERGALHAAFARPDTQPVVSIDGNSVSADRFFAGLRPGGWLN
DEVINCWLATLRLRFPRTVFANTQFYANLMAGYPSIRAGVCYCFKHVVKW
CEGRSGEKSGLARLWRDPTVSKFVVPVHMSGNHWVLVAADFNTHTVTEYD
SLGAGEAEGGGGEDGAGMEDENGASLSRSYHVLMFLEDLSFWTAGDDSAQ
LPHWWELASAPEAPRHPDTCSCGVFAAFAAAAVAAAPRGASPDFLSYSIP
HARGQEWRRAQACRAALMRETIARVLVSDSSREEERKAALAAQATARTTT
LGDPPDSGHARMSYAINSSISSSSIKLDVRLAAPFSRGTVVKHLADRLGC
EAWFHQGKSRGFLLGGSNDAVPTVSGSADKLLELLSALLSSGPAGFSQDM
RMSLRVTNMSPSMLCRLLNLVPGAVAAGQGAVSHSAQQTLSHFNI*
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mRNA from alignment at Contig_171:142559..147609-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15347 ID=mRNA_15347|Name=jgi.p|Trimin1|353571|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5051bp|location=Sequence derived from alignment at Contig_171:142559..147609- (Tribonema minus UTEX_B_3156 )
CAAATACAGGACATCCCAACACCTAGGCGTGCTGCTGTCCCGACCAGCAA
AGCGCCTGATCTTCGCACCAGGCGTACCACGTGAAGGGAGCAGGGGGTGC
GGGATGGAAGTTTAGCAGAGCCTGGTTCGTGCTGTTCAAGGCAGCAGTAG
TTAGGCGCATTTCTGGGGGAGCGCACAAGGGCGTGGCGTCGCAGGTAATT
GCACTTCCCCCGTGATAATTACCTGTGACAGCGAGGTGCAAGAAGTTGAT
TAATTGAACGCACCAGCTCGCCAGCCCCCGTTAATGTTTAGCTGTCGCGT
ACTGTTTTGTCAGGCTGCGGGCTAAGTCGCCGATTCGACCTGAGTCAGGG
GCCTGGTCAGGCGATTACGATACAGCATGAAGAACCGCAGAGGTCGAAGC
TCTGCATGACGTTTTGTCAAGCTCAAGCGGTGGCTCTGGCAGATGGGCCA
ATCGCCAATTGCGAGGTACTGGGAGGCATGGGCACAGGTACGACAGCCTT
GGTTGCGGCGGCCGGATTGGCGACTGGACAGAACAAGGGCAAAGATGAAG
TGTAGGGGGACAAGTGATGGTCATGGTCGGTCATGGTCGTGGTGCACTGG
TTAGGGTTAGGGTTAGAATTAGGGTCACTGGCGGGGGATGGTGGTGGCGG
CAGTGGTGGCAGCAGTGGCTACGCTGGCGCCACGATACCGCTGGTCAGTG
TCTACTGCACCATGACTATATGAAATTCGGCCTGGTGGGGGCGACGTTGA
GCTTGAGTTTTGTTGGTGGATGGCTGTATGGCATCTGGAGCACGCTGCGG
TGGTTCAGCAGCTGCAGTGCTGTGCAGGATTTGTCATGACGTCGATGATC
ACAGACTGCAGATATTTTGAACTTGGCTGGGGAGTTCGGCCCTTGGTGGT
GCTCAGCAGCTCTCCCCAGCAAGAGTGCGCAATCTTGATAGTATGCTGAG
GATCAAGGAGGGCACACGTCCATGACTCACTGTGCACTGGTATGACGGTG
TAGCCACATAAGCCTGATACTAAACCGATGCGCACCAGCCTGTCAGGTCA
CGCATGTGACGCAAAAGACTCAAGAAGCAGTGGTACCTCTGGCGATATGC
TCAGACGATATATCCGATATGTTACAGGGCTGCGAGAGTTACTGTAGTGC
TCAAAGCCCCAGACAATGAGTGATTTACGTGTTGTTGAGTTCCAACAGCT
CAGGCATCCATACCGACGTCTTCAGCGTCGGCCTTAAAGGTTGCGGAACC
TGAGGCGAAACCCTATGAGGTTTCGGCGCGCTCGCCCTAAGCGGAGCCCC
TGAACCCTTCTTCCTCCACTGGTGCCCTGAGTCAGTGCTGTTAGCACAGC
AGATTTTGTTTTTACAGACTGAGCATAAATGTGCACAGCCCCCCCGTCCC
GCAGTCGCCTACACTGATACTGTTTTCCATTTCCTCACTCTCTGCACGCA
GGTGAGATTATGGCATTGGGAAGATCAGAGCATGTCTACGCAGAAACCGC
GTGCAGCGCGCACAACAGCAGCGCCGTGACGCCGAGCGGCAGCAACGGCG
AAGGCTACCGCCCCCCGCAGCCACGGGATCTCGACGCCGTCAGCTCGCTC
CCCCCGGACCTCGTGCCCCGCGCCCTCACGCCGGAGGAGAGGGGGGCCCT
GCACGCAGCGTTCGCACGGCCGGACACTCAGCCAGTCGTCTCCATAGACG
GCAATTCGGTCTCCGCCGACAGGTTCTTCGCCGGACTCCGCCCCGGGGGC
TGGCTCAACGACGAGGTCATCAACTGCTGGCTGGCGACCTTGAGGCTCCG
CTTCCCGCGGACGGTGTTTGCCAACACGCAGTTCTACGCAAACCTGATGG
CGGGCTATCCGAGTATCCGGGCGGGGGTGTGCTACTGTTTCAAACATGTG
GTGAAGTGGTGCGAGGGGCGCAGTGGAGAAAAGAGCGGCCTGGCAAGGCT
GTGGCGGGACCCGACGGTGTCGAAGTTCGTGGTCCCGGTGCACATGAGTG
GGAACCACTGGGTGCTGGTGGCCGCGGACTTCAACACTCACACTGTCACC
GAGTACGACTCACTGGGGGCAGGGGAGGCGGAGGGGGGGGGGGGCGAGGA
TGGGGCGGGCATGGAGGATGAAAACGGGGCGAGTCTCTCCCGCTCCTATC
ACGTGCTGATGTTCCTTGAAGACCTGTCCTTTTGGACTGCAGGGGACGAT
AGTGCCCAGCTCCCACACTGGTGGGAACTTGCAAGTGCTCCAGAGGCCCC
ACGGCATCCTGACACGTGCAGCTGCGGGGTGTTTGCGGCATTCGCGGCTG
CGGCGGTCGCCGCAGCGCCGCGAGGCGCCTCCCCTGACTTCCTGTCCTAC
TCGATCCCGCATGCCCGGGGACAAGAGTGGCGCAGGGCCCAGGCCTGTCG
CGCGGCGTTGATGCGGGAGACAATTGCCCGTGTTCTGGTCTCCGATTCCT
CCCGGGAGGAGGAGCGCAAGGCAGCACTGGCGGCGCAGGCGACAGCGGTC
GAGGCACTGCTACACCTCAAGTCAACTTGAAGTCAGCCGTCGTGACGAAC
TGCCACGAACACCCGGTGGTGCGACAGCTGCGAGTGCGCCCGGCGCAGCG
TTTCAGTGTCTTCTCTTTCAGTGCCTCACGTGTGCATCAATGTACAGATG
TAATGCTTTTGCTTGCTGCATTCGACATGTTTGCCTCCGACTCATTAATT
TTTTTATTATTTTATTGGAGGCAAAGGCAAAAAGTTATCCCTTTTTCCAC
CTACGAGCCATGGGGGTACTAGCTTGCACGGCTCTGCAGCTTGATCCGCC
GCCACCATGATACGCCACTGTTATTGCCGCCGTGCATCGAGGCAGGCAGC
TTGCGGCTGCCTCCGCCGCCGCCGCCGCTCTTTTTTTCTTCACACTTTTC
GCACACACAGCATACATCGGTACCTCGTGTCCTCACTTGCTCACGTGCCC
CTAGATTCTAACCAGCAGCCAGCCAGCCAGCCACCTGGTCCAGCCAGCGG
CAGGCTCTGAACTCAGCCAGGGTACTGTAGGTATTGCGGGCACTCACATG
CTCACGTGACTCAAAGACCACGCATCCTGAACACACAGCACAGCGGTATG
GAGGCATTAGTGGAGGAGCACGGTCCGGTGGCCTCTCTCTGCTGCCAGGA
GCAGGGCAGCGACTTCAGGCTTCGGCAGGCACTGTTACGCTGCCCATTCA
CTCGCCTGTCCTGAAATCGCACAGCCGCTTCTTCGAGAGAGCGCTGGATC
CCGCCAGCCCATTCATCGAAGCACATACAGGACTTCTGGTCAAGGACCAT
TGGAGAGAGGCGGAGACTAGAGCTCTACTGCAGCTCTGCTACAGCGGCAA
GGCAGATGTGCTCGTCAACGACCTACCAGCACTGGTGCGCTGCGCCATGG
AGACCGAGTGCCCTCAAGTGGAAGCAGCCGCACGGCTAGCCTGCGCACAG
GCTGTGTCGACGGATACGCTTTCGGCCCTCACCGAGCTGCCTGAATCCGC
TCATGAAGCAGCCTCCTCCCCAGACGCAAAATTTCACTGCGCCTTGCGAT
CCTGGACTGCGCCGGAGGATGTGAGGACACTGTTTTTGGAGATGAAGCCT
TGCGACCTGCGAATTGAGGACAGTCCATCAACAGACCCAGTGTGCAATAC
CCAGGTCTACCGTTGCCAGTATCAGGTCGACACCCGTGCTTCTGAAGGCA
CTTCAGAGCTCCGCGTACATGTGCGATTGGAGGCTGAACGTGAAGGGAGC
GGCAGCCTGGAAGCAGAGCCAGACGGAATGGAAGCAGAGCTAAGCGACAA
GGAGAAGCTGCCACGTTGTTGCAGGCGCATACCTGTTCAAAAGAACGTGC
AGGTTGCGTTCACTGGCCCCGCCATGGCTGCCGCCTCGGCGTTGCTCCAG
CGCACCACCACACTCGGCGATCCCCCAGACTCGGGCCATGCACGCATGTC
ATACGCTATCAACAGCAGCATCAGCAGCAGCAGCATCAAGCTAGATGTGC
GCCTCGCTGCGCCCTTCTCTAGAGGAACTGTTGTCAAACACCTGGCAGAC
CGACTGGGCTGCGAGGCCTGGTTCCACCAGGGCAAATCCCGAGGATTCCT
GCTGGGAGGCTCCAACGACGCGGTGCCCACAGTCAGCGGCTCTGCAGACA
AGCTGCTGGAACTGCTATCCGCGCTGCTATCCAGCGGGCCTGCAGGCTTT
TCACAGGACATGAGGATGTCACTGCGTGTCACAAACATGAGCCCGAGCAT
GCTCTGCCGGTTGCTCAATCTTGTGCCGGGAGCAGTGGCAGCGGGGCAAG
GTGAGCAGCTGCCGGTGGCCTGTGCTGTTTTTGATAGCGCACCACCGTAG
TACAGCAGCAATGATCCTTTATTGGTATGAAAAGCATCTGCATGGCGCAC
TTATGCGACCACGGACCGATAAGTCGCCTCGTGCTTGCTTTTGGAGTAGC
ACATCTCCGTCTGAAGCGATTGCATAACGGCGGGTGACAGATACAGCACT
TGCGACTACTTCAGGAGTGTACTGTACTCATGGACTTGGTTGTTTTAAGC
GCCCCAACTCCACACCTCCTGAGTATGCAAGTGATCAAACTGCCTTATCC
CACAGGCGCACAAGTGCACTCGTATCTATCGTCGTCACATATGTGCAGAA
GATAGATGGCAGCATGCACAGCTAGCTACCTGACGGAGTTGTTAATTTTT
GTTGAAGCAGACGAAGTGTGGCTGATTTATGCAAGCCCCCCCCCCCCCCT
TCCTGTCTGCGTGTATTTCAGGGAGTCTGGGCCCACAGACACGCGGTGAC
GAGCCTCAGGGAAAGGTCCTCTGCCACACAGGGAATGCCGACCAGCCCGC
CCATTTCTACGTGCTGCTACCGCTCTGCATGATGAAAGCACTACTCAGCG
ACCAGACTGCGGCAGCACCACACATCCCTGATGGCGACTGTGGTAAAGCC
ACCCAATCGCAGGCCCACCGCACGGTGCTTGTCGTCAGGTGACCGCCACA
GGCGCGGTGAGCCACAGTGCTCAGCAGACCTTGTCGCACTTCAACATATG
A
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Coding sequence (CDS) from alignment at Contig_171:142559..147609-

>mRNA_15347 ID=mRNA_15347|Name=jgi.p|Trimin1|353571|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1488bp|location=Sequence derived from alignment at Contig_171:142559..147609- (Tribonema minus UTEX_B_3156 )
ATGGCATTGGGAAGATCAGAGCATGTCTACGCAGAAACCGCGTGCAGCGC
GCACAACAGCAGCGCCGTGACGCCGAGCGGCAGCAACGGCGAAGGCTACC
GCCCCCCGCAGCCACGGGATCTCGACGCCGTCAGCTCGCTCCCCCCGGAC
CTCGTGCCCCGCGCCCTCACGCCGGAGGAGAGGGGGGCCCTGCACGCAGC
GTTCGCACGGCCGGACACTCAGCCAGTCGTCTCCATAGACGGCAATTCGG
TCTCCGCCGACAGGTTCTTCGCCGGACTCCGCCCCGGGGGCTGGCTCAAC
GACGAGGTCATCAACTGCTGGCTGGCGACCTTGAGGCTCCGCTTCCCGCG
GACGGTGTTTGCCAACACGCAGTTCTACGCAAACCTGATGGCGGGCTATC
CGAGTATCCGGGCGGGGGTGTGCTACTGTTTCAAACATGTGGTGAAGTGG
TGCGAGGGGCGCAGTGGAGAAAAGAGCGGCCTGGCAAGGCTGTGGCGGGA
CCCGACGGTGTCGAAGTTCGTGGTCCCGGTGCACATGAGTGGGAACCACT
GGGTGCTGGTGGCCGCGGACTTCAACACTCACACTGTCACCGAGTACGAC
TCACTGGGGGCAGGGGAGGCGGAGGGGGGGGGGGGCGAGGATGGGGCGGG
CATGGAGGATGAAAACGGGGCGAGTCTCTCCCGCTCCTATCACGTGCTGA
TGTTCCTTGAAGACCTGTCCTTTTGGACTGCAGGGGACGATAGTGCCCAG
CTCCCACACTGGTGGGAACTTGCAAGTGCTCCAGAGGCCCCACGGCATCC
TGACACGTGCAGCTGCGGGGTGTTTGCGGCATTCGCGGCTGCGGCGGTCG
CCGCAGCGCCGCGAGGCGCCTCCCCTGACTTCCTGTCCTACTCGATCCCG
CATGCCCGGGGACAAGAGTGGCGCAGGGCCCAGGCCTGTCGCGCGGCGTT
GATGCGGGAGACAATTGCCCGTGTTCTGGTCTCCGATTCCTCCCGGGAGG
AGGAGCGCAAGGCAGCACTGGCGGCGCAGGCGACAGCGCGCACCACCACA
CTCGGCGATCCCCCAGACTCGGGCCATGCACGCATGTCATACGCTATCAA
CAGCAGCATCAGCAGCAGCAGCATCAAGCTAGATGTGCGCCTCGCTGCGC
CCTTCTCTAGAGGAACTGTTGTCAAACACCTGGCAGACCGACTGGGCTGC
GAGGCCTGGTTCCACCAGGGCAAATCCCGAGGATTCCTGCTGGGAGGCTC
CAACGACGCGGTGCCCACAGTCAGCGGCTCTGCAGACAAGCTGCTGGAAC
TGCTATCCGCGCTGCTATCCAGCGGGCCTGCAGGCTTTTCACAGGACATG
AGGATGTCACTGCGTGTCACAAACATGAGCCCGAGCATGCTCTGCCGGTT
GCTCAATCTTGTGCCGGGAGCAGTGGCAGCGGGGCAAGGCGCGGTGAGCC
ACAGTGCTCAGCAGACCTTGTCGCACTTCAACATATGA
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