mRNA_15337 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|178481
Unique NamemRNA_15337
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|178481 vs. uniprot
Match: A0A835Z562_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z562_9STRA)

HSP 1 Score: 721 bits (1862), Expect = 3.190e-261
Identity = 408/408 (100.00%), Postives = 408/408 (100.00%), Query Frame = 1 
Query:    1 VYVCGAPGTGKTCTLQRLEHEVRTWLAGGSGXXXXXXXXXXXARPTFINVDAVFQTSPMQVFQRVLDKIPKTVQHSLRGKRSGGGDARAQLEAMLAPXXXXXXXXXXXXXXTKTMLVLTIDEVNYLRGRGDPVLQALFGWACAPNSRLILIGVANGINFTKKADLGVPSDAVKTLVFPTYTAAQLKEIVAVRAGSVFQPRAAAVCVKRVAARSGDAREMLQLAQSAALAVRKRVQAALASGRSLDDDGGSSSGVGTQVSSNVAATVGMVTTRDISAADAAFNGASNRSTIGELPPAHKLLLCVIAVLRAECCGKPPEVMAIKERFAYAMDDAGFGTYQQYFNSALQTLVDYGHVDVKGGGTNRFHWHQKPRLVKLNVSVDDLRAVLTAGVYKKVLRHAGXXXXXXAWR 1224
            VYVCGAPGTGKTCTLQRLEHEVRTWLAGGSGXXXXXXXXXXXARPTFINVDAVFQTSPMQVFQRVLDKIPKTVQHSLRGKRSGGGDARAQLEAMLAPXXXXXXXXXXXXXXTKTMLVLTIDEVNYLRGRGDPVLQALFGWACAPNSRLILIGVANGINFTKKADLGVPSDAVKTLVFPTYTAAQLKEIVAVRAGSVFQPRAAAVCVKRVAARSGDAREMLQLAQSAALAVRKRVQAALASGRSLDDDGGSSSGVGTQVSSNVAATVGMVTTRDISAADAAFNGASNRSTIGELPPAHKLLLCVIAVLRAECCGKPPEVMAIKERFAYAMDDAGFGTYQQYFNSALQTLVDYGHVDVKGGGTNRFHWHQKPRLVKLNVSVDDLRAVLTAGVYKKVLRHAGXXXXXXAWR
Sbjct:    1 VYVCGAPGTGKTCTLQRLEHEVRTWLAGGSGXXXXXXXXXXXARPTFINVDAVFQTSPMQVFQRVLDKIPKTVQHSLRGKRSGGGDARAQLEAMLAPXXXXXXXXXXXXXXTKTMLVLTIDEVNYLRGRGDPVLQALFGWACAPNSRLILIGVANGINFTKKADLGVPSDAVKTLVFPTYTAAQLKEIVAVRAGSVFQPRAAAVCVKRVAARSGDAREMLQLAQSAALAVRKRVQAALASGRSLDDDGGSSSGVGTQVSSNVAATVGMVTTRDISAADAAFNGASNRSTIGELPPAHKLLLCVIAVLRAECCGKPPEVMAIKERFAYAMDDAGFGTYQQYFNSALQTLVDYGHVDVKGGGTNRFHWHQKPRLVKLNVSVDDLRAVLTAGVYKKVLRHAGXXXXXXAWR 408
[Close]
BLAST of jgi.p|Trimin1|178481 vs. uniprot
Match: A0A835YIZ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIZ8_9STRA)

HSP 1 Score: 442 bits (1136), Expect = 2.230e-149
Identity = 271/406 (66.75%), Postives = 305/406 (75.12%), Query Frame = 1 
Query:    1 VYVCGAPGTGKTCTLQRLEHEVRTWLAGGSGXXXXXXXXXXXARPTFINVDAVFQTSPMQVFQRVLDKIPKTVQHSLRGKRSGGG-----DARAQLEAMLAPXXXXXXXXXXXXXXT-KTMLVLTIDEVNYLRGRGDPVLQALFGWACAPNSRLILIGVANGINFTKKADLGVPSDAVKTLVFPTYTAAQLKEIVAVRAGSVFQPRAAAVCVKRVAARSGDAREMLQLAQSAALAVRKRVQAALASGRSLDDDGGSSSGVGTQVSSNVAATV-GMVTTRDISAADAAFNGASNRSTIGELPPAHKLLLCVIAVLRAECCGKPPEVMAIKERFAYAMDDAGFGTYQQYFNSALQTLVDYGHVDVKGGGTNRFHWHQKPRLVKLNVSVDDLRAVLTAGVYKKVLRHAG 1197
            +YV GAPGTGKTCTLQ++E  VR W   GS XXXXXXXX   ARP F++VDA FQTS  +VFQR+L+KIP  VQ SLR  R G G     DARAQLEAMLAP      XXXXXXXX  KTMLVLTI+EVNYLRGRGD VLQALFGWACAPNSRL+LIGVAN IN T+ AD+GVPSDAV +++FPTYTA QL+EI+  RAG VF PRAAA+C KRVA RSGDAR+ LQLAQ A + VRKR++AALASG S            +QVSSNVAAT  G+VTTRD+SAA AA +GAS RST+GEL PA K+LLCVIA LRAE CG  PEV AI +R A AM DAGFGTYQQ F  AL  L D   V+V+GGG +R    +KPR VKLNVS DDLRAV T  V+KKVL  AG
Sbjct:   95 IYVSGAPGTGKTCTLQQVEDAVRVWRGEGSXXXXXXXXX---ARPAFVHVDAAFQTSAKEVFQRILEKIPGNVQRSLRAGRGGSGGSSSGDARAQLEAMLAPPDNGSGXXXXXXXXAAKTMLVLTIEEVNYLRGRGDAVLQALFGWACAPNSRLVLIGVANNINLTETADIGVPSDAVTSVLFPTYTAVQLEEILTARAGGVFDPRAAALCAKRVAVRSGDARDALQLAQGAVIVVRKRIEAALASGGSGXXXXXXX--XXSQVSSNVAATAAGLVTTRDVSAAAAAIDGASGRSTMGELAPAQKMLLCVIAALRAERCGDTPEVAAIMQRHAGAMLDAGFGTYQQGFQYALDALADGNLVEVQGGGIDRRDGGEKPRFVKLNVSDDDLRAVFTENVFKKVLPRAG 495
[Close]
BLAST of jgi.p|Trimin1|178481 vs. uniprot
Match: A0A835YJC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJC9_9STRA)

HSP 1 Score: 360 bits (925), Expect = 8.050e-120
Identity = 231/332 (69.58%), Postives = 259/332 (78.01%), Query Frame = 1 
Query:    1 VYVCGAPGTGKTCTLQRLEHEVRTWLAGGSGXXXXXXXXXXXARPTFINVDAVFQTSPMQVFQRVLDKIPKTVQHSLRGKRSGG----------GDARAQLEAMLAPXXXXXXXXXXXXXXT-KTMLVLTIDEVNYLRGRGDPVLQALFGWACAPNSRLILIGVANGINFTKKADLGVPSDAVKTLVFPTYTAAQLKEIVAVRAGSVFQPRAAAVCVKRVAARSGDAREMLQLAQSAALAVRKRVQAALASGRSLDDDGGSSSGVGTQVSSNVAATV-GMVTTRDISAADAAFNGASNRSTIGELPPAHKLLLCVIAVLRAECCGKPPEVMA 960
            +YV GAPGTGKTCTLQ++E  VR WL  G  XXXXXXXX   ARP F++VDA FQTS  +VFQR+L+KIP+ VQ SLR  RSGG           DARAQLEAMLAPXXXXXXXXXXXXXX  KTMLVLTI+EVNYLRGRGD VLQALFGWACAPNSRL+LIGVAN IN T+ AD+GVPSDAVK+++FPTYTA QL+EI+  RAG +F PRAAA+C KRVA RSGDAR+ LQLAQ A + VRKR++AALASG S             QVSSNVAAT  GMVTTRD+SAA AA +GAS RST+GEL PA K+LLCVIA LRAE CG  PEV A
Sbjct:   16 IYVSGAPGTGKTCTLQQVEDAVRVWLGEGXXXXXXXXXX---ARPAFVHVDAAFQTSAKEVFQRILEKIPRNVQRSLRPGRSGGCGXXXXXXXXXDARAQLEAMLAPXXXXXXXXXXXXXXXXKTMLVLTIEEVNYLRGRGDAVLQALFGWACAPNSRLVLIGVANNINLTETADIGVPSDAVKSVLFPTYTAVQLEEILTARAGGIFDPRAAALCAKRVAVRSGDARDALQLAQGAVIVVRKRIEAALASGGSGXXXXXXXXXX--QVSSNVAATAAGMVTTRDVSAAAAAIDGASGRSTMGELAPAQKMLLCVIAALRAERCGDTPEVAA 342
[Close]
BLAST of jgi.p|Trimin1|178481 vs. uniprot
Match: A0A835ZET1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZET1_9STRA)

HSP 1 Score: 179 bits (455), Expect = 2.420e-52
Identity = 93/112 (83.04%), Postives = 100/112 (89.29%), Query Frame = 1 
Query:  343 MLVLTIDEVNYLRGRGDPVLQALFGWACAPNSRLILIGVANGINFTKKADLGVPSDAVKTLVFPTYTAAQLKEIVAVRAGSVFQPRAAAVCVKRVAARSGDAREMLQLAQSA 678
            MLVLT+DE+ YLRGR D VLQALFGWACAPNSRLILIGVANGINFT+KADLGVPSDAVK++VFPTYTA QL+EIVA RAGSVFQPRA  +CVKR A  SGDAR  LQLAQSA
Sbjct:    1 MLVLTVDEIYYLRGRSDSVLQALFGWACAPNSRLILIGVANGINFTEKADLGVPSDAVKSVVFPTYTAKQLEEIVATRAGSVFQPRATELCVKRTATYSGDARIALQLAQSA 112
[Close]
BLAST of jgi.p|Trimin1|178481 vs. uniprot
Match: D7FJK0_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJK0_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.780e-16
Identity = 90/311 (28.94%), Postives = 129/311 (41.48%), Query Frame = 1 
Query:    1 VYVCGAPGTGKTCTLQRLEHEVRTWLAGGSGXXXXXXXXXXXARPTFINVDAVFQTSPMQVFQRVLDKIPKTVQHSLRGKRSGGGDARAQLEAMLAPXXXXXXXXXXXXXXTKTMLVLTIDEVNYLRGRGDPVLQALFGWACAPNSRLILIGVANGINFTKKADLGVPSDAVKTLVFPTYTAAQLKEIVAVRAGSVFQPRAAAVCVKRVAARSGDAREMLQLAQSAALAVRKRVQAAL------ASGRSLDDDGGSSSGVGTQVSSNVAATVGMVTTRDISAADAAFNGASNRSTIGELPPAHKLLLCVIA 915
            +Y+CG PGTGKT T+  +  EV+   + G               P F        TSP  +   +   I     +  RG   G G  + +L+  L                T  MLV+ +DE++ L      VL+ LF WA AP SRL+L+G+AN ++F           A + L+F +YT   L  I+  R GS   P A   C K+ AA +GDAR  L   + A +   + +Q  L      A    L + GG +                +VT R ++ A AA N A     I  L    K++L V A
Sbjct:  586 LYLCGVPGTGKTQTMAHVRAEVQEKFSKGH-----------IPAPAFHAFTGTEFTSPNAMHGALWRAI-----NGARGGEEGIGTEK-KLDNKLK-------YWQKKPTATSPMLVVVLDEIDQLMTENRQVLRKLFQWADAPKSRLVLVGLANSLDFN--ISFSGLKKAPQRLLFQSYTPEDLASILTERVGSTVHPSAIQFCAKKAAATTGDARRALNTCREAVVLADQELQQKLDDATSEAEREQLGEGGGDN----------------LVTIRHMAKAVAAGNAAKYAGAIAALSLHAKVVLTVAA 854
[Close]
BLAST of jgi.p|Trimin1|178481 vs. uniprot
Match: A0A7C9E3U9_OPUST (Cell division control protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9E3U9_OPUST)

HSP 1 Score: 91.3 bits (225), Expect = 3.240e-16
Identity = 74/233 (31.76%), Postives = 112/233 (48.07%), Query Frame = 1 
Query:    1 VYVCGAPGTGKTCTLQRLEHEVRTWLAGGSGXXXXXXXXXXXARPTFINVDAVFQTSPMQVFQRVLDKI-PKTVQHSLRGKRSGGGDARAQLEAMLAPXXXXXXXXXXXXXXTKTMLVLTIDEVNYLRGRGDPVLQALFGWACAPNSRLILIGVANGINFTKKADLGVPSDAVK--TLVFPTYTAAQLKEIVAVRAG----SVFQPRAAAVCVKRVAARSGDAREMLQLAQSA 678
            +YVCG PGTGKT  +++++  +  W +                +P  + ++    TS  +VF ++L KI PK        K SG   A   L+ + A               +K ML+L IDE++YL  +   VL  LF     P SR ILIG+AN I+   +    + S   K   L F  Y+  Q++ I+  R      +VFQP+A  +C ++VAA SGD R+ L + +SA
Sbjct:  170 LYVCGCPGTGKTMVMEKVKQSLVNWSSEAE-----------VQQPDVLFMNCTSLTSTSEVFTKILQKIKPKK-------KISGSSTALKHLQNLYAQGGQLP---------SKKMLLLIIDELDYLITKDRNVLHELFMLTTLPFSRFILIGIANAIDLADRFLPRLQSLNCKPTVLTFRAYSKDQIQRILQERLVELPYTVFQPQALELCARKVAAASGDMRKALCICRSA 375
[Close]
BLAST of jgi.p|Trimin1|178481 vs. uniprot
Match: A9RUZ9_PHYPA (Cdc6_C domain-containing protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RUZ9_PHYPA)

HSP 1 Score: 89.7 bits (221), Expect = 5.510e-16
Identity = 71/250 (28.40%), Postives = 114/250 (45.60%), Query Frame = 1 
Query:    1 VYVCGAPGTGKTCTLQRLEHEVRTWLAGGSGXXXXXXXXXXXARPTFINVDAVFQTSPMQVFQRVLDKIPKTVQHSLRGKRSGGGDARAQLEAMLAPXXXXXXXXXXXXXXTKTMLVLTIDEVNYLRGRGDPVLQALFGWACAPNSRLILIGVANGINFT-----KKADLGVPSDAVKTLVFPTYTAAQLKEIVAVRAG----SVFQPRAAAVCVKRVAARSGDAREMLQLAQSAALAVRKRVQAALASG 723
            +YVCG PGTGK+ T+++++    +W A  +            + P  ++V+    T P  ++Q+VL         SL+ K +     ++    +                  + ML+L +DE++YL  R   VL  LF     PNS  ILIG+AN I+ T     K   L    D +    +P YT  Q+  ++  R      +VFQ  +  +C ++VAA SGD R+ L + +SA   +   V+A L  G
Sbjct:   41 IYVCGCPGTGKSLTMEQVKLLSVSWAAEAN-----------LSPPDIVSVNCTTLTDPRNIYQKVLQ--------SLKQKEASDDVVKSWSLCLKELRQRVCDTSRKSGGSPRHMLLLIVDEMDYLITRNQEVLYDLFQLPTYPNSCCILIGIANAIDLTDRFLPKLRSLNCRPDVI---TYPAYTKDQISTVLTQRLKGVPFTVFQTASVELCARKVAAASGDMRKALHVCRSALDILETEVRAELDKG 268
[Close]
BLAST of jgi.p|Trimin1|178481 vs. uniprot
Match: A0A2K1L1G3_PHYPA (Cell division control protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L1G3_PHYPA)

HSP 1 Score: 89.7 bits (221), Expect = 1.220e-15
Identity = 71/250 (28.40%), Postives = 114/250 (45.60%), Query Frame = 1 
Query:    1 VYVCGAPGTGKTCTLQRLEHEVRTWLAGGSGXXXXXXXXXXXARPTFINVDAVFQTSPMQVFQRVLDKIPKTVQHSLRGKRSGGGDARAQLEAMLAPXXXXXXXXXXXXXXTKTMLVLTIDEVNYLRGRGDPVLQALFGWACAPNSRLILIGVANGINFT-----KKADLGVPSDAVKTLVFPTYTAAQLKEIVAVRAG----SVFQPRAAAVCVKRVAARSGDAREMLQLAQSAALAVRKRVQAALASG 723
            +YVCG PGTGK+ T+++++    +W A  +            + P  ++V+    T P  ++Q+VL         SL+ K +     ++    +                  + ML+L +DE++YL  R   VL  LF     PNS  ILIG+AN I+ T     K   L    D +    +P YT  Q+  ++  R      +VFQ  +  +C ++VAA SGD R+ L + +SA   +   V+A L  G
Sbjct:  244 IYVCGCPGTGKSLTMEQVKLLSVSWAAEAN-----------LSPPDIVSVNCTTLTDPRNIYQKVLQ--------SLKQKEASDDVVKSWSLCLKELRQRVCDTSRKSGGSPRHMLLLIVDEMDYLITRNQEVLYDLFQLPTYPNSCCILIGIANAIDLTDRFLPKLRSLNCRPDVI---TYPAYTKDQISTVLTQRLKGVPFTVFQTASVELCARKVAAASGDMRKALHVCRSALDILETEVRAELDKG 471
[Close]
BLAST of jgi.p|Trimin1|178481 vs. uniprot
Match: A0A388LI88_CHABU (MBD domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LI88_CHABU)

HSP 1 Score: 89.7 bits (221), Expect = 1.570e-15
Identity = 72/248 (29.03%), Postives = 110/248 (44.35%), Query Frame = 1 
Query:    1 VYVCGAPGTGKTCTLQRLEHEVRTWLAGGSGXXXXXXXXXXXARPTFINVDAVFQTSPMQVFQRVLDKIPKTVQHSLRGKRSGGGDARAQLEAMLAPXXXXXXXXXXXXXXTKT------MLVLTIDEVNYLRGRGDPVLQALFGWACAPNSRLILIGVANGINFTKKA--DLGVPSDAVKTLVFPTYTAAQLKEIVAVR----AGSVFQPRAAAVCVKRVAARSGDAREMLQLAQSAALAVRKRVQA 708
            +Y+CG PGTGKT T++ L+  V  W    +            A PT + ++ +    P Q+FQRVL  +       L GK +    A       +AP               K       M++L +DE+++L  +   VL  LF     P SR IL+G+AN I+ T++    L   S     + FP Y  +Q+  I+  R    +   F P A  +C ++VAA  GD R+ L + + A  A    V+A
Sbjct:  548 MYICGCPGTGKTLTMEELKKNVPQWALQAA-----------VAPPTVVMMNCMCAVEPKQIFQRVLSFL-------LTGKTNATSSA-----VSIAPKNALTELTKIVATPRKGNREQDGMVLLILDEIDHLMTKDQAVLYELFRLTTLPESRCILVGIANSIDMTQRLLPHLRAFSCIPSVVTFPAYNQSQICAILNQRLKRLSFQAFHPLAIELCARKVAAAFGDMRKALDVCRLAVDAFLSEVKA 772
[Close]
BLAST of jgi.p|Trimin1|178481 vs. uniprot
Match: A0A7L4D207_9AVES (CDC6 protein (Fragment) n=1 Tax=Eurystomus gularis TaxID=325343 RepID=A0A7L4D207_9AVES)

HSP 1 Score: 86.3 bits (212), Expect = 1.630e-15
Identity = 75/243 (30.86%), Postives = 111/243 (45.68%), Query Frame = 1 
Query:    1 VYVCGAPGTGKTCTLQRLEHEVRTWLAGGSGXXXXXXXXXXXARPTFINVDAVFQTSPMQVFQRVLDKIPKTVQHSLRGKRSGGGDARAQLEAMLAPXXXXXXXXXXXXXXTKTMLVLTIDEVNYLRGRGDPVLQALFGWACAPNSRLILIGVANGINFTKK--ADLGV-PSDAVKTLVFPTYTAAQLKEIVAVRAGSV-----FQPRAAAVCVKRVAARSGDAREMLQLAQSAALAVRKRVQ 705
            +Y+ GAPGTGKT  L R+  + +  LA                R   I V+ +  +SP  VF  V  ++       L    S   D+  +LE  L                   +++L +DE++ L  +G  VL  LF W   PNSRL+L+G+AN ++ T +  A LG  P+ + + L FP YT  QL  I+  R G V         A   C ++V+A SGDAR+ L + + A   V   V+
Sbjct:   45 LYISGAPGTGKTACLSRVLLDCKDELA----------------RSKTIMVNCMSLSSPQSVFPAVAQEL------GLPSATSR--DSVRRLEKQLTAQGP--------------VVLLVLDELDQLESKGQDVLYTLFEWPRLPNSRLVLVGLANALDLTDRGLARLGARPAGSPQLLHFPPYTREQLTAILTDRLGQVDGDPVLDAAALQFCARKVSAVSGDARKALDICRRAVEVVELEVR 249
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178481 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z562_9STRA3.190e-261100.00AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835YIZ8_9STRA2.230e-14966.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YJC9_9STRA8.050e-12069.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZET1_9STRA2.420e-5283.04Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7FJK0_ECTSI2.780e-1628.94AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7C9E3U9_OPUST3.240e-1631.76Cell division control protein n=1 Tax=Opuntia stre... [more]
A9RUZ9_PHYPA5.510e-1628.40Cdc6_C domain-containing protein (Fragment) n=1 Ta... [more]
A0A2K1L1G3_PHYPA1.220e-1528.40Cell division control protein n=3 Tax=Physcomitriu... [more]
A0A388LI88_CHABU1.570e-1529.03MBD domain-containing protein n=1 Tax=Chara brauni... [more]
A0A7L4D207_9AVES1.630e-1530.86CDC6 protein (Fragment) n=1 Tax=Eurystomus gularis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_171contigContig_171:95754..96980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|178481|e_gw1.171.34.1
BRITEko00000,ko00001,ko00002,ko03032,ko03036
KEGG ModuleM00284
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG koko:K02213,ko:K02603,ko:K02606
GOsGO:0000075,GO:0000076,GO:0000079,GO:0000082,GO:0000083,GO:0000166,GO:0000228,GO:0000278,GO:0000793,GO:0000794,GO:0000922,GO:0001932,GO:0001934,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006275,GO:0006355,GO:0006725,GO:0006807,GO:0007049,GO:0007088,GO:0007089,GO:0007346,GO:0008150,GO:0008152,GO:0008156,GO:0008284,GO:0008285,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010965,GO:0015630,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0019900,GO:0022402,GO:0030071,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031401,GO:0031570,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032465,GO:0032467,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033674,GO:0034641,GO:0034645,GO:0036094,GO:0042127,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045737,GO:0045786,GO:0045787,GO:0045859,GO:0045860,GO:0045931,GO:0045934,GO:0045937,GO:0046483,GO:0048145,GO:0048146,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051053,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051233,GO:0051246,GO:0051247,GO:0051252,GO:0051302,GO:0051338,GO:0051347,GO:0051726,GO:0051781,GO:0051783,GO:0051983,GO:0051984,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0090068,GO:0090304,GO:0097159,GO:1900087,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902806,GO:1902808,GO:1903047,GO:1903506,GO:1904029,GO:1904031,GO:1905818,GO:2000045,GO:2000112,GO:2000113,GO:2001141
Preferred nameCDC6
DescriptionDNA replication initiation
COG categoryLO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1474@1|root,KOG2227@2759|Eukaryota
Evalue4.55e-17
Seed ortholog2880.D7FJK0
Hectar predicted targeting categoryother localisation
TranscriptId178803
TrackFilteredModels1
ProteinId178481
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178481gene_15337Tribonema minus UTEX_B_3156 geneContig_171 95754..96980 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15337_1exon_15337_1Tribonema minus UTEX_B_3156 exonContig_171 95754..96980 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15337CDS_15337Tribonema minus UTEX_B_3156 CDSContig_171 95754..96980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178481Trimin1|178481|e_gw1.171.34.1Tribonema minus UTEX_B_3156 polypeptideContig_171 95754..96980 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15337 ID=mRNA_15337|Name=jgi.p|Trimin1|178481|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1227bp|location=Sequence derived from alignment at Contig_171:95754..96980+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCTACGTATGCGGCGCACCGGGGACAGGCAAGACGTGCACGCTGCAGCG
GCTGGAGCATGAGGTGCGCACGTGGCTCGCCGGAGGCAGCGGCAGCAGCG
CCGCTGCCAGCGCCGCAGCAGCAGCAGCGCGGCCCACGTTCATCAACGTG
GACGCCGTATTCCAGACGTCGCCGATGCAGGTGTTCCAGCGCGTACTGGA
TAAGATCCCAAAGACAGTGCAGCACAGCCTCCGAGGAAAGCGCAGTGGCG
GCGGCGATGCGCGTGCGCAGCTGGAGGCCATGCTTGCGCCCCCGGACGAT
GGCGGCGCCAGCAGCAGCAGCGCCGGTGGCACGACGAAGACGATGCTGGT
GCTGACGATCGACGAGGTCAACTACCTGCGAGGCCGCGGCGATCCTGTGC
TGCAGGCGCTGTTTGGCTGGGCATGCGCGCCCAACTCTCGCCTCATTCTC
ATCGGCGTCGCCAACGGCATCAACTTCACCAAGAAAGCGGACCTCGGCGT
TCCTAGCGACGCTGTGAAGACCCTGGTGTTCCCCACATACACGGCTGCGC
AGCTCAAGGAGATAGTGGCGGTGCGCGCCGGCAGCGTGTTCCAGCCGCGC
GCCGCTGCGGTATGCGTCAAAAGGGTGGCGGCGCGCAGCGGCGATGCGCG
CGAAATGCTGCAGCTGGCGCAGAGCGCTGCCCTTGCTGTCCGAAAAAGAG
TTCAGGCAGCTCTCGCCAGCGGCCGCAGCCTTGATGACGACGGTGGCAGC
AGCAGCGGTGTCGGCACCCAAGTCAGCAGCAACGTTGCCGCGACGGTGGG
CATGGTCACCACTCGTGACATTTCGGCAGCAGACGCCGCCTTCAATGGGG
CTAGCAACCGCAGCACAATCGGGGAGCTCCCACCCGCGCATAAGCTCCTG
CTCTGCGTCATTGCGGTACTGCGTGCTGAGTGCTGCGGCAAGCCGCCCGA
GGTGATGGCGATCAAGGAGCGCTTTGCCTACGCCATGGATGACGCCGGCT
TCGGCACGTACCAGCAGTACTTTAACTCCGCGCTCCAGACTCTCGTCGAC
TATGGTCACGTGGATGTAAAGGGCGGGGGTACCAACCGCTTCCACTGGCA
TCAGAAACCCCGCCTCGTCAAGTTGAATGTCAGCGTCGACGACCTCCGTG
CGGTGCTCACGGCGGGCGTCTACAAAAAGGTGCTGCGGCATGCAGGCGGC
GGCGGCGGCGGCGGCGCGTGGCGCTGA
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protein sequence of jgi.p|Trimin1|178481

>Trimin1|178481|e_gw1.171.34.1 ID=Trimin1|178481|e_gw1.171.34.1|Name=jgi.p|Trimin1|178481|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=409bp
VYVCGAPGTGKTCTLQRLEHEVRTWLAGGSGSSAAASAAAAAARPTFINV
DAVFQTSPMQVFQRVLDKIPKTVQHSLRGKRSGGGDARAQLEAMLAPPDD
GGASSSSAGGTTKTMLVLTIDEVNYLRGRGDPVLQALFGWACAPNSRLIL
IGVANGINFTKKADLGVPSDAVKTLVFPTYTAAQLKEIVAVRAGSVFQPR
AAAVCVKRVAARSGDAREMLQLAQSAALAVRKRVQAALASGRSLDDDGGS
SSGVGTQVSSNVAATVGMVTTRDISAADAAFNGASNRSTIGELPPAHKLL
LCVIAVLRAECCGKPPEVMAIKERFAYAMDDAGFGTYQQYFNSALQTLVD
YGHVDVKGGGTNRFHWHQKPRLVKLNVSVDDLRAVLTAGVYKKVLRHAGG
GGGGGAWR*
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mRNA from alignment at Contig_171:95754..96980+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15337 ID=mRNA_15337|Name=jgi.p|Trimin1|178481|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1227bp|location=Sequence derived from alignment at Contig_171:95754..96980+ (Tribonema minus UTEX_B_3156 )
GTCTACGTATGCGGCGCACCGGGGACAGGCAAGACGTGCACGCTGCAGCG
GCTGGAGCATGAGGTGCGCACGTGGCTCGCCGGAGGCAGCGGCAGCAGCG
CCGCTGCCAGCGCCGCAGCAGCAGCAGCGCGGCCCACGTTCATCAACGTG
GACGCCGTATTCCAGACGTCGCCGATGCAGGTGTTCCAGCGCGTACTGGA
TAAGATCCCAAAGACAGTGCAGCACAGCCTCCGAGGAAAGCGCAGTGGCG
GCGGCGATGCGCGTGCGCAGCTGGAGGCCATGCTTGCGCCCCCGGACGAT
GGCGGCGCCAGCAGCAGCAGCGCCGGTGGCACGACGAAGACGATGCTGGT
GCTGACGATCGACGAGGTCAACTACCTGCGAGGCCGCGGCGATCCTGTGC
TGCAGGCGCTGTTTGGCTGGGCATGCGCGCCCAACTCTCGCCTCATTCTC
ATCGGCGTCGCCAACGGCATCAACTTCACCAAGAAAGCGGACCTCGGCGT
TCCTAGCGACGCTGTGAAGACCCTGGTGTTCCCCACATACACGGCTGCGC
AGCTCAAGGAGATAGTGGCGGTGCGCGCCGGCAGCGTGTTCCAGCCGCGC
GCCGCTGCGGTATGCGTCAAAAGGGTGGCGGCGCGCAGCGGCGATGCGCG
CGAAATGCTGCAGCTGGCGCAGAGCGCTGCCCTTGCTGTCCGAAAAAGAG
TTCAGGCAGCTCTCGCCAGCGGCCGCAGCCTTGATGACGACGGTGGCAGC
AGCAGCGGTGTCGGCACCCAAGTCAGCAGCAACGTTGCCGCGACGGTGGG
CATGGTCACCACTCGTGACATTTCGGCAGCAGACGCCGCCTTCAATGGGG
CTAGCAACCGCAGCACAATCGGGGAGCTCCCACCCGCGCATAAGCTCCTG
CTCTGCGTCATTGCGGTACTGCGTGCTGAGTGCTGCGGCAAGCCGCCCGA
GGTGATGGCGATCAAGGAGCGCTTTGCCTACGCCATGGATGACGCCGGCT
TCGGCACGTACCAGCAGTACTTTAACTCCGCGCTCCAGACTCTCGTCGAC
TATGGTCACGTGGATGTAAAGGGCGGGGGTACCAACCGCTTCCACTGGCA
TCAGAAACCCCGCCTCGTCAAGTTGAATGTCAGCGTCGACGACCTCCGTG
CGGTGCTCACGGCGGGCGTCTACAAAAAGGTGCTGCGGCATGCAGGCGGC
GGCGGCGGCGGCGGCGCGTGGCGCTGA
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Coding sequence (CDS) from alignment at Contig_171:95754..96980+

>mRNA_15337 ID=mRNA_15337|Name=jgi.p|Trimin1|178481|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1227bp|location=Sequence derived from alignment at Contig_171:95754..96980+ (Tribonema minus UTEX_B_3156 )
GTCTACGTATGCGGCGCACCGGGGACAGGCAAGACGTGCACGCTGCAGCG
GCTGGAGCATGAGGTGCGCACGTGGCTCGCCGGAGGCAGCGGCAGCAGCG
CCGCTGCCAGCGCCGCAGCAGCAGCAGCGCGGCCCACGTTCATCAACGTG
GACGCCGTATTCCAGACGTCGCCGATGCAGGTGTTCCAGCGCGTACTGGA
TAAGATCCCAAAGACAGTGCAGCACAGCCTCCGAGGAAAGCGCAGTGGCG
GCGGCGATGCGCGTGCGCAGCTGGAGGCCATGCTTGCGCCCCCGGACGAT
GGCGGCGCCAGCAGCAGCAGCGCCGGTGGCACGACGAAGACGATGCTGGT
GCTGACGATCGACGAGGTCAACTACCTGCGAGGCCGCGGCGATCCTGTGC
TGCAGGCGCTGTTTGGCTGGGCATGCGCGCCCAACTCTCGCCTCATTCTC
ATCGGCGTCGCCAACGGCATCAACTTCACCAAGAAAGCGGACCTCGGCGT
TCCTAGCGACGCTGTGAAGACCCTGGTGTTCCCCACATACACGGCTGCGC
AGCTCAAGGAGATAGTGGCGGTGCGCGCCGGCAGCGTGTTCCAGCCGCGC
GCCGCTGCGGTATGCGTCAAAAGGGTGGCGGCGCGCAGCGGCGATGCGCG
CGAAATGCTGCAGCTGGCGCAGAGCGCTGCCCTTGCTGTCCGAAAAAGAG
TTCAGGCAGCTCTCGCCAGCGGCCGCAGCCTTGATGACGACGGTGGCAGC
AGCAGCGGTGTCGGCACCCAAGTCAGCAGCAACGTTGCCGCGACGGTGGG
CATGGTCACCACTCGTGACATTTCGGCAGCAGACGCCGCCTTCAATGGGG
CTAGCAACCGCAGCACAATCGGGGAGCTCCCACCCGCGCATAAGCTCCTG
CTCTGCGTCATTGCGGTACTGCGTGCTGAGTGCTGCGGCAAGCCGCCCGA
GGTGATGGCGATCAAGGAGCGCTTTGCCTACGCCATGGATGACGCCGGCT
TCGGCACGTACCAGCAGTACTTTAACTCCGCGCTCCAGACTCTCGTCGAC
TATGGTCACGTGGATGTAAAGGGCGGGGGTACCAACCGCTTCCACTGGCA
TCAGAAACCCCGCCTCGTCAAGTTGAATGTCAGCGTCGACGACCTCCGTG
CGGTGCTCACGGCGGGCGTCTACAAAAAGGTGCTGCGGCATGCAGGCGGC
GGCGGCGGCGGCGGCGCGTGGCGCTGA
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