mRNA_1530 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|134794
Unique NamemRNA_1530
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|134794 vs. uniprot
Match: A0A835Z5B2_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B2_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.090e-37
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    1 PAHFLRPISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRLAMSEVFPNLAIATAV 186
            PAHFLRPISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRLAMSEVFPNLAIATAV
Sbjct:    1 PAHFLRPISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRLAMSEVFPNLAIATAV 62
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BLAST of jgi.p|Trimin1|134794 vs. uniprot
Match: A0A835YZZ2_9STRA (U-box domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZZ2_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.590e-30
Identity = 53/62 (85.48%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 PAHFLRPISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRLAMSEVFPNLAIATAV 186
            PAHFL PI L WLVNPV+TPSG TYS+ ELELWVRENGTDPIAR RLAMSEV PNLAIATAV
Sbjct:    1 PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRLAMSEVIPNLAIATAV 62
[Close]
BLAST of jgi.p|Trimin1|134794 vs. uniprot
Match: A0A836CKT5_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKT5_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.650e-29
Identity = 51/62 (82.26%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 PAHFLRPISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRLAMSEVFPNLAIATAV 186
            PAHFL P  L WLVNP +TPSGITYSR ELELWVRENGTDPIAR RL +SEV PNLAIATAV
Sbjct:    1 PAHFLCPTFLDWLVNPAITPSGITYSRGELELWVRENGTDPIARSRLGLSEVIPNLAIATAV 62
[Close]
BLAST of jgi.p|Trimin1|134794 vs. uniprot
Match: A0A835YWC4_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWC4_9STRA)

HSP 1 Score: 105 bits (263), Expect = 8.460e-29
Identity = 53/64 (82.81%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 PAHFLRPISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRLAMSEVFPNLAI--ATAV 186
            PAH L PISL WLVNPV+TPSGITYSREEL+LWVRENGTDP+AR RLAMSEV  NLAI  ATAV
Sbjct:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAIMFATAV 64
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BLAST of jgi.p|Trimin1|134794 vs. uniprot
Match: A0A836C868_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C868_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.650e-27
Identity = 51/62 (82.26%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 PAHFLRPISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRLAMSEVFPNLAIATAV 186
            PAHFL PISL WLVNPV TPSGIT  R ELELWV ENGTDPIAR RLA SEV PNLA+ATAV
Sbjct:   21 PAHFLCPISLDWLVNPVTTPSGITSPRGELELWVSENGTDPIARSRLATSEVIPNLAVATAV 82
[Close]
BLAST of jgi.p|Trimin1|134794 vs. uniprot
Match: A0A836CBI8_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.950e-26
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 PAHFLRPISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRLAMSEVFPNLAI 174
            PAHF+ PISL W VNPVVTPSGITYSR ELELWV ENGTDPIAR RL +SEV PN+AI
Sbjct:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 58
[Close]
BLAST of jgi.p|Trimin1|134794 vs. uniprot
Match: A0A835Z2F1_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2F1_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 7.790e-22
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 PAHFLRPISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRL 141
            PAHFL PISL WLVNPV+TPSGITYSR ELELWVRENGTDPIAR  L
Sbjct:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL 47
[Close]
BLAST of jgi.p|Trimin1|134794 vs. uniprot
Match: A0A2N1MYB8_9GLOM (RING-type E3 ubiquitin transferase n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N1MYB8_9GLOM)

HSP 1 Score: 60.8 bits (146), Expect = 6.090e-10
Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:    1 PAHFLRPISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRLAMSEVFPNLAIATAV 186
            P+ ++ PISL W+ +PVVTPSG++Y R  LE W+R +  DP+ R  L + +V+ N  +  A+
Sbjct:   95 PSQYMCPISLNWMEDPVVTPSGVSYDRALLEEWLRNDPHDPLTREVLTIDQVYANRNLKDAI 156
[Close]
BLAST of jgi.p|Trimin1|134794 vs. uniprot
Match: A0A7S1IXJ3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IXJ3_9EUGL)

HSP 1 Score: 58.9 bits (141), Expect = 7.730e-9
Identity = 22/55 (40.00%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 PAHFLRPISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRLAMSEVFPN 165
            P H++ PI++  + +PV+TPSG +Y R  LE W+ E G++P+ R  L+ +++ PN
Sbjct:  165 PTHYICPITMEVMRDPVITPSGNSYERSALESWIMEKGSEPLTRESLSRTQLIPN 219
[Close]
BLAST of jgi.p|Trimin1|134794 vs. uniprot
Match: A0A7S3J6A7_9SPIT (Hypothetical protein n=2 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3J6A7_9SPIT)

HSP 1 Score: 54.7 bits (130), Expect = 4.970e-8
Identity = 23/52 (44.23%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   19 PISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRLAMSEVFPNLAI 174
            PI    +V+PV+TPSG+TY R  +E  ++ N  DP+++ RL ++++ PNLAI
Sbjct:   46 PIKYDKIVDPVITPSGVTYERVMIERSIKVNRVDPVSKDRLTIAKIKPNLAI 97
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|134794 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5B2_9STRA1.090e-37100.00U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A835YZZ2_9STRA2.590e-3085.48U-box domain-containing protein (Fragment) n=2 Tax... [more]
A0A836CKT5_9STRA5.650e-2982.26U-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A835YWC4_9STRA8.460e-2982.81U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A836C868_9STRA1.650e-2782.26U-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A836CBI8_9STRA1.950e-2681.03U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A835Z2F1_9STRA7.790e-2287.23U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A2N1MYB8_9GLOM6.090e-1041.94RING-type E3 ubiquitin transferase n=2 Tax=Rhizoph... [more]
A0A7S1IXJ3_9EUGL7.730e-940.00Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S3J6A7_9SPIT4.970e-844.23Hypothetical protein n=2 Tax=Euplotes harpa TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1346674..1346859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|134794|gw1.18.92.1
BRITEko00000,ko00001,ko03110
KEGG Pathwayko05020,map05020
KEGG koko:K09553
Descriptionubiquitin-protein transferase activity
COG categoryKLT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0515@1|root,2QQ1P@2759|Eukaryota
Evalue2.51e-10
Seed ortholog55529.EKX42406
Hectar predicted targeting categoryother localisation
TranscriptId135116
TrackFilteredModels1
ProteinId134794
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134794gene_1530Tribonema minus UTEX_B_3156 geneContig_18 1346674..1346859 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1530_1exon_1530_1Tribonema minus UTEX_B_3156 exonContig_18 1346674..1346859 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1530CDS_1530Tribonema minus UTEX_B_3156 CDSContig_18 1346674..1346859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134794Trimin1|134794|gw1.18.92.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1346674..1346859 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1530 ID=mRNA_1530|Name=jgi.p|Trimin1|134794|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=186bp|location=Sequence derived from alignment at Contig_18:1346674..1346859- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGGCACATTTTCTACGCCCCATTTCCCTCGCTTGGCTGGTGAACCCTGT
AGTTACCCCAAGTGGAATCACGTACTCCCGGGAGGAACTTGAGCTGTGGG
TGCGCGAGAATGGCACGGATCCTATTGCTCGCGGCCGTCTTGCTATGAGT
GAGGTGTTTCCTAATCTTGCCATTGCAACTGCAGTC
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protein sequence of jgi.p|Trimin1|134794

>Trimin1|134794|gw1.18.92.1 ID=Trimin1|134794|gw1.18.92.1|Name=jgi.p|Trimin1|134794|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=62bp
PAHFLRPISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRLAMS
EVFPNLAIATAV
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mRNA from alignment at Contig_18:1346674..1346859-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1530 ID=mRNA_1530|Name=jgi.p|Trimin1|134794|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=186bp|location=Sequence derived from alignment at Contig_18:1346674..1346859- (Tribonema minus UTEX_B_3156 )
CCGGCACATTTTCTACGCCCCATTTCCCTCGCTTGGCTGGTGAACCCTGT
AGTTACCCCAAGTGGAATCACGTACTCCCGGGAGGAACTTGAGCTGTGGG
TGCGCGAGAATGGCACGGATCCTATTGCTCGCGGCCGTCTTGCTATGAGT
GAGGTGTTTCCTAATCTTGCCATTGCAACTGCAGTC
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Coding sequence (CDS) from alignment at Contig_18:1346674..1346859-

>mRNA_1530 ID=mRNA_1530|Name=jgi.p|Trimin1|134794|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=186bp|location=Sequence derived from alignment at Contig_18:1346674..1346859- (Tribonema minus UTEX_B_3156 )
CCGGCACATTTTCTACGCCCCATTTCCCTCGCTTGGCTGGTGAACCCTGT
AGTTACCCCAAGTGGAATCACGTACTCCCGGGAGGAACTTGAGCTGTGGG
TGCGCGAGAATGGCACGGATCCTATTGCTCGCGGCCGTCTTGCTATGAGT
GAGGTGTTTCCTAATCTTGCCATTGCAACTGCAGTC
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