mRNA_15277 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|178427
Unique NamemRNA_15277
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|178427 vs. uniprot
Match: A0A836CJS5_9STRA (Spo11/DNA topoisomerase VI subunit A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJS5_9STRA)

HSP 1 Score: 518 bits (1334), Expect = 1.990e-185
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 1
Query:    1 MVLRSAAALLRGAKTATQRELYYMDTNLFAGGQAQCNAAILTVSALLREPRHCLGVVASSRGFYTGRLRTRHAAGXXXXXXXXXXXXDWHDPRTAGGTGASVNSDWISHALEAESDAQFLLVVEKDGAFARLSEDRFYDRLPCIIVTGQGFPPVAVRAMVRALQSALNLPAYGLVDCGPFGLSLLLTYVHGGARMGEQAAHYTADVKWLGLRPSQLDALDLPAQAYAPQSDNDQRRARTLAESIHVTARPELEAEVDYWSRGGYKVCIG 807
            MVLRSAAALLRGAKTATQRELYYMDTNLFAGGQAQCNAAILTVSALLREPRHCLGVVASSRGFYTGRLRTRHAAGXXXXXXXXXXXXDWHDPRTAGGTGASVNSDWISHALEAESDAQFLLVVEKDGAFARLSEDRFYDRLPCIIVTGQGFPPVAVRAMVRALQSALNLPAYGLVDCGPFGLSLLLTYVHGGARMGEQAAHYTADVKWLGLRPSQLDALDLPAQAYAPQSDNDQRRARTLAESIHVTARPELEAEVDYWSRGGYKVCIG
Sbjct:    1 MVLRSAAALLRGAKTATQRELYYMDTNLFAGGQAQCNAAILTVSALLREPRHCLGVVASSRGFYTGRLRTRHAAGXXXXXXXXXXXXDWHDPRTAGGTGASVNSDWISHALEAESDAQFLLVVEKDGAFARLSEDRFYDRLPCIIVTGQGFPPVAVRAMVRALQSALNLPAYGLVDCGPFGLSLLLTYVHGGARMGEQAAHYTADVKWLGLRPSQLDALDLPAQAYAPQSDNDQRRARTLAESIHVTARPELEAEVDYWSRGGYKVCIG 269          
BLAST of jgi.p|Trimin1|178427 vs. uniprot
Match: D7G356_ECTSI (Sporulation-specific protein 11 homologue n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G356_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 4.640e-74
Identity = 130/265 (49.06%), Postives = 165/265 (62.26%), Query Frame = 1
Query:   25 LLRGAKTATQRELYYMDTNLFAGGQAQCNAAILTVSALLREPRHCLGVVASSRGFYTGRLRTRHAAGXXXXXXXXXXXXDWHDPRTAGGT-GASVNSDWISHALEAESDAQFLLVVEKDGAFARLSEDRFYDR-----------LPCIIVTGQGFPPVAVRAMVRALQSALNLPAYGLVDCGPFGLSLLLTYVHGGARMGEQAAHY-TADVKWLGLRPSQLDALDLPAQAYAPQSDNDQRRARTLAESIHVTARPELEAE-VDYW 777
            LL   KTATQRE+YY     FA  Q +CN AIL   +LL EPRHCLG+VASSRG+  GR+  R                DW DPR+ GG+ G ++ SDW++  LE +SDA+ +LVVEKDG F R+ ED FYDR           +P ++VTGQGFPP+AVRA V  L  AL+LP  GLVDC PFGLS+ L Y  G +R G  +A +   ++KW+GLRPSQLD LDLP + +   S  D  RA+++A S  VT  P+   E V+YW
Sbjct:    7 LLETRKTATQREIYYTFVKHFAN-QTKCNDAILDCCSLLGEPRHCLGIVASSRGYLAGRISIRGEG-----------FEDWQDPRSTGGSSGLAITSDWLTRPLELKSDARIVLVVEKDGVFNRMVEDGFYDRANVSTLHYLRRIPSVLVTGQGFPPLAVRACVYRLAEALDLPVLGLVDCNPFGLSVFLQYKEGSSRQGRGSAKFGVPEMKWVGLRPSQLDDLDLPDEVHQTLSQQDLSRAQSVANSTLVTDNPDTYGEEVEYW 259          
BLAST of jgi.p|Trimin1|178427 vs. uniprot
Match: A0A6H5KRW2_9PHAE (TP6A_N domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW2_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 1.110e-68
Identity = 125/262 (47.71%), Postives = 159/262 (60.69%), Query Frame = 1
Query:   25 LLRGAKTATQRELYYMDTNLFAGGQAQCNAAILTVSALLREPRHCLGVVASSRGFYTGRLRTRHAAGXXXXXXXXXXXXDWHDPRTAGGT-GASVNSDWISHALEAESDAQFLLVVEKDGAFARLSEDRFYDRLPCIIVTGQGFPPVAVRAMVRALQSALNLPAYGLVDCGPFGLSLLLTYVHGGARMGEQAAHYTA-DVKWLGLRPSQLDALDLPAQA--------YAPQSDNDQRRARTLAESIHVTARPELEAE-VDYW 777
            LL   KTATQRE+YY     FA  Q +CN AIL   +LL EPRHCLG+VASSRG+  GR+  R                DW DPR+ GG+ G ++ SDW++  LE +SDA+ +LVVEKDG F R+ ED F D      +TGQGFPP+AVRA V  L  AL+LP  GLVDC PFGLS+ L Y  G ++ G  +A +   ++KW+GLRPSQLD LDLP +A        +   S  D  RA+++A S  VT  P+   E  +YW
Sbjct:    7 LLETRKTATQREIYYTFVKHFAN-QTKCNDAILDCCSLLGEPRHCLGIVASSRGYLAGRISVRGEG-----------FQDWQDPRSTGGSSGLAITSDWLTRPLELKSDARIILVVEKDGVFNRMVEDGFCD------ITGQGFPPLAVRACVYRLAEALDLPVLGLVDCNPFGLSVFLQYKEGSSKQGRGSAKFRVPEMKWVGLRPSQLDDLDLPEEASKKIITEVHQTLSQQDLARAQSVANSTLVTDNPDTYGEEAEYW 250          
BLAST of jgi.p|Trimin1|178427 vs. uniprot
Match: A0A485L555_9STRA (Aste57867_16293 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L555_9STRA)

HSP 1 Score: 201 bits (511), Expect = 9.330e-60
Identity = 109/267 (40.82%), Postives = 148/267 (55.43%), Query Frame = 1
Query:    1 MVLRSAAALLRGAKTATQRELYYMDTNLFAGGQAQCNAAILTVSALLREPRHCLGVVASSRGFYTGRLRTRHAAGXXXXXXXXXXXXDWHDPRTAGGTGASVNSDWISHALEA-ESDAQFLLVVEKDGAFARLSEDRFYDRLPCIIVTGQGFPPVAVRAMVRALQSALNLPAYGLVDCGPFGLSLLLTYVHGGARMGEQAAHYTADVKWLGLRPSQLDALDLPAQAYAPQSDNDQRRARTLAESIHVTARPELEAEVDYWSRGGYKV 798
            +VL++   LL+  KT TQRELYY+ T  F   Q   +  IL V   L  PR CL +V   +G +TGR+                    W D    G TG  +  + +    E   SDA F+LV+EKDG F RLSED F+D +PCI+VTG+GFP +A R  VR L   L +P  GL DC PFGLS+LLTY  G ARM   A HYT D++W+GLRPS +  LDLP       S +D+ R ++L +  ++  +P+ + E+  W    +K+
Sbjct:   41 LVLQTVYNLLKEDKTITQRELYYLHT--FFETQKDADECILDVGGFLGVPRECLNIVGGVKGCFTGRISIAENG-------------LWIDCAKDGPTGRPITRETLRLQPEQITSDANFILVIEKDGIFNRLSEDCFFDTMPCILVTGKGFPDLATRCFVRKLSDCLGIPVLGLCDCNPFGLSILLTYKLGSARMPLDAMHYTVDIRWIGLRPSHVPQLDLPPVVKKKFSKHDKHRIQSLLQHPYIQMQPQYQEEIACWVHDPFKI 292          
BLAST of jgi.p|Trimin1|178427 vs. uniprot
Match: A0A6A4Z7N9_9STRA (TP6A_N domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z7N9_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.670e-58
Identity = 110/273 (40.29%), Postives = 151/273 (55.31%), Query Frame = 1
Query:    1 MVLRSAAALLRGAKTATQRELYYMDTNLFAGGQAQCNAAILTVSALLREPRHCLGVVASSRGFYTGRLRTRHAAGXXXXXXXXXXXXDWHDPRTAGGTGASVNSDWIS-HALEAESDAQFLLVVEKDGA------FARLSEDRFYDRLPCIIVTGQGFPPVAVRAMVRALQSALNLPAYGLVDCGPFGLSLLLTYVHGGARMGEQAAHYTADVKWLGLRPSQLDALDLPAQAYAPQSDNDQRRARTLAESIHVTARPELEAEVDYWSRGGYKV 798
            +VL++   LL   K+ TQRELYY+    F   Q + + +IL     L  PR CL +V   +G +TGR+  +                 W D    G +G  +  D +  H  + +SDA+F+LV+EKDG       F RLSED F+D +PCI+VTG+GFP +A R  V+ L   L +P  GL DC  FGLS+LLTY  G ARM   + HY  D++WLGLRPSQL+AL+LP       S+ D+RR ++L     V  +P+   E+D W    YKV
Sbjct:    3 LVLQTVHQLLLEDKSITQRELYYLHP--FFESQKEADESILDTGGFLGVPRECLNIVGGVKGCFTGRISIQENG-------------QWVDCAKDGPSGRPITRDILRLHHDQIDSDARFILVIEKDGIMSAYSIFNRLSEDLFFDAMPCILVTGKGFPDLATRCFVKKLSDFLQVPVLGLCDCNSFGLSILLTYKFGSARMPLDSIHYAVDIEWLGLRPSQLEALELPNVVKKKCSNQDKRRMKSLMLHPFVQMQPQYRHEIDLWLADPYKV 260          
BLAST of jgi.p|Trimin1|178427 vs. uniprot
Match: A0A1V9YKA4_9STRA (TP6A_N domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YKA4_9STRA)

HSP 1 Score: 199 bits (505), Expect = 2.820e-58
Identity = 113/274 (41.24%), Postives = 154/274 (56.20%), Query Frame = 1
Query:    1 MVLRSAAALLRGAKTATQRELYYMDTNLFAGGQAQCNAAILTVSALLREPRHCLGVVASSRGFYTGRLRTRHAAGXXXXXXXXXXXXDWHDPRTAGGTGASVNSDWI---SHALEAE-----SDAQFLLVVEKDGAFARLSEDRFYDRLPCIIVTGQGFPPVAVRAMVRALQSALNLPAYGLVDCGPFGLSLLLTYVHGGARMGEQAAHYTADVKWLGLRPSQLDALDLPAQAYAPQSDNDQRRARTLAESIHVTARPELEAEVDYWSRGGYKV 798
            +VL+ A  LLR  KT TQRELYY+    F   Q + +  IL VS LLR PR CL +V   +G++TGR+  +                 W D    GGTG  ++ D +   SH ++       SDA++++VVEK+G F RL ED F++R+PCI+VTG+GFP +A R  V+ L  AL +P  GL DC PFGLS+ L+Y  G ARM   +  Y  D+KW+GLRP    AL+LP       S +D+RR + L     V    +  AEVD W+R   K+
Sbjct:   82 LVLQIAHQLLRENKTVTQRELYYLHP--FFTTQQEADECILDVSGLLRVPRECLNIVGGVKGYFTGRICYQET------------NNHWIDCSQDGGTGRPISRDILRLESHQMQIFGVFNLSDAKYVIVVEKEGIFNRLGEDLFFNRVPCILVTGKGFPDLATRIFVKKLSDALRVPVLGLCDCNPFGLSIFLSYKFGSARMPLDSVAYAVDIKWVGLRPLDAMALELPKVVRTKFSKHDKRRLQGLLAHPFVQTNAQYGAEVDEWARLPQKI 341          
BLAST of jgi.p|Trimin1|178427 vs. uniprot
Match: A0A1W0A8B8_9STRA (TP6A_N domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8B8_9STRA)

HSP 1 Score: 188 bits (478), Expect = 2.270e-54
Identity = 103/267 (38.58%), Postives = 149/267 (55.81%), Query Frame = 1
Query:    1 MVLRSAAALLRGAKTATQRELYYMDTNLFAGGQAQCNAAILTVSALLREPRHCLGVVASSRGFYTGRLRTRHAAGXXXXXXXXXXXXDWHDPRTAGGTGASVNSDWIS-HALEAESDAQFLLVVEKDGAFARLSEDRFYDRLPCIIVTGQGFPPVAVRAMVRALQSALNLPAYGLVDCGPFGLSLLLTYVHGGARMGEQAAHYTADVKWLGLRPSQLDALDLPAQAYAPQSDNDQRRARTLAESIHVTARPELEAEVDYWSRGGYKV 798
            +VL+ A  LL   KT TQRELYY+  N F   Q + +  IL V+ LL  PR CL +V + +G++ G +  +  +G             W D R  G TG  +  D +     +  SDAQ+++V+EKDG F RL ED+F+  +P I+VTG+GFP +A R  V+ L     +P   L DC PFGLS+LL+Y  G ARM   +  Y  D KW+GLRP +   L+LP  A  P S +D+ R + L +  ++       AEV++W++  YK+
Sbjct:   78 LVLQIAQQLLLQDKTITQRELYYI--NPFFSNQQEADECILDVAGLLCVPRECLNIVGAVKGYFNGCITYQERSG------------QWTDCRLDGPTGRPITQDILRLRDDQITSDAQYIIVIEKDGIFNRLGEDQFFHNIPSILVTGRGFPDLATRVFVKKLSERFQIPVLCLCDCNPFGLSILLSYKFGSARMPIDSICYAVDAKWIGLRPLEAMLLELPDVAKKPFSKHDKSRLQWLLQHPYLKIDSAYHAEVEHWTQYAYKI 330          
BLAST of jgi.p|Trimin1|178427 vs. uniprot
Match: A0A7S2JQ12_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JQ12_9STRA)

HSP 1 Score: 183 bits (465), Expect = 2.290e-52
Identity = 109/291 (37.46%), Postives = 156/291 (53.61%), Query Frame = 1
Query:    1 MVLRSAAALLRGAKTATQRELYYMDTNLFAGGQAQCNAAILTVSALLREPRHCLGVVASSRGFYTGRLRTRHAAGXXXXXXXXXXXXDWHDPRTAGGT-------------GASVNSDWISHA--------LEAESDAQFLLVVEKDGAFARLSEDRFYDRLPCIIVTGQGFPPVAVRAMVRALQSALNLPAYGLVDCGPFGLSLLLTYVHGGARMGEQAAHYTADVKWLGLRPSQLDAL--DLPAQAYAPQSDNDQRRARTLAESI--HVTARPELEAEVDYWSRGGYKV 798
            MV+  A  LL  ++T+T REL+Y     F   Q   +AAIL V+ LL  PR  LG+VAS +G+Y GRL+   +A             +  D    G               G  +  +W+              ESDA  +L VEK+G + RLSEDRF+D++PCI++TG+GFP +A RA V AL + LN+P YGL DC PFG+S+L+TY  G +++G  A  Y+  VKWLGLRPS ++ L  +LP + +   ++ D R+  +L       V   PE + E+      GYK+
Sbjct:   47 MVMSYAHNLLLNSRTSTTRELFYFYVTHFKS-QRDTDAAILDVTRLLDVPRVSLGLVASPKGWYCGRLKLTKSASTPLSRARTDGDFELSDADDNGVDIQVTDCSTLTSIHGLPITREWLDVVSWKENDPNFSIESDAVCILCVEKEGIYTRLSEDRFFDKVPCILITGKGFPDLASRACVFALHNMLNIPVYGLCDCNPFGVSVLMTYWRGSSKLGNDADSYSVPVKWLGLRPSHIEELSPELPQEVFQNLTNTDFRKLDSLMSETCDFVDKNPERKEELFEMQENGYKL 336          
BLAST of jgi.p|Trimin1|178427 vs. uniprot
Match: A0A067D4V8_SAPPC (TP6A_N domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D4V8_SAPPC)

HSP 1 Score: 183 bits (465), Expect = 2.600e-52
Identity = 107/271 (39.48%), Postives = 152/271 (56.09%), Query Frame = 1
Query:    1 MVLRSAAALLRGAKTATQRELYYMDTNLFAGGQAQCNAAILTVSALLREPRHCLGVVASSRGFYTGRLRTRHAAGXXXXXXXXXXXXDWHDPRTAGGTGASVNSDWISHALEAE---SDAQFLLVVEKDGAFARLSEDRFYDRLPCIIVTGQGFPPVAVRAMVRALQSALNLPAYGLVDCGPFGLSLLLTYVHGGARMGEQAAHY--TADVKWLGLRPSQLDALDLPAQAYAPQSDNDQRRARTLAESIHVTARPELEAEVDYWSRGGYKV 798
            +VL+ A  LL   KT TQRELYY+    F   Q + +  IL VS LL  PR CL +V   +G+++GRL  R A               W D    G +G  ++ + +   LE+E   SDAQ+++VVEK+G F RL ED F++R+PCI+VTG+GFP +A R  V+ L+  L +P  GL DC PFGLS+LL++  G ARM   +  Y  + D+ W+GLRP    +L+LP   +   S +D RR ++L     V       AEV +W +   K+
Sbjct:   87 LVLQIAHQLLLEDKTVTQRELYYLHP--FFTTQQEADECILDVSGLLCVPRECLNIVGGVKGYFSGRLCYRSA------------DKQWIDCSLDGASGRPISRELLR--LESEDMISDAQYIIVVEKEGIFNRLGEDLFFNRVPCILVTGKGFPDLATRIFVKKLRDTLRVPVLGLCDCNPFGLSILLSFKFGSARMPLDSVAYGTSVDMHWIGLRPLDTASLELPDIVHTKFSKHDTRRLQSLVAHPFVQMDAAYRAEVQHWMKHPLKI 341          
BLAST of jgi.p|Trimin1|178427 vs. uniprot
Match: A0A8K1C609_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C609_PYTOL)

HSP 1 Score: 183 bits (464), Expect = 3.760e-52
Identity = 107/264 (40.53%), Postives = 141/264 (53.41%), Query Frame = 1
Query:    1 MVLRSAAALLRGAKTATQRELYYMDTNLFAGGQAQCNAAILTVSALLREPRHCLGVVASSRGFYTGRLRTRHAAGXXXXXXXXXXXXDWHDPRTAGGTGASVNSDWISHALEAESDAQFLLVVEKDGAFARLSEDRFYDRLPCIIVTGQGFPPVAVRAMVRALQSALNLPAYGLVDCGPFGLSLLLTYVHGGARMGEQAAHYTADVKWLGLRPSQLDALDLPAQAYAPQSDNDQRRARTLAESIHVTARPELEAEVDYWSRGGY 792
            +VL +   LL   KT TQRE+YYM    F   Q + + AIL    +LR PR  L +V +++G ++G L+                  +W      G           +   E  SDA  +LVVEKDG F RL EDRF D+LP IIVTG+GFP +A R  V  L   L LP  GL DC PFGLS++LTY  G ARM      +  D+KW+GLRPS+++ LDLP  A+   S  D+ RA++LA+S  V +  E   EV  WS   +
Sbjct:   91 LVLHTVYELLSQRKTVTQREIYYMHP--FFKNQNEADEAILDTGCILRAPRGSLNIVGATKGCFSGCLKLMKEG-------------EWRSYNN-GDEHPITQQILQAKPSEIASDACCILVVEKDGIFNRLREDRFVDQLPSIIVTGRGFPDLATREFVSLLSRTLELPVIGLSDCNPFGLSIMLTYKLGSARMPLDTRPFGVDIKWVGLRPSRIEQLDLPPTAFKELSSKDRARAKSLAQSDFVQSHCEYVEEVRMWSESAF 338          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178427 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJS5_9STRA1.990e-185100.00Spo11/DNA topoisomerase VI subunit A n=1 Tax=Tribo... [more]
D7G356_ECTSI4.640e-7449.06Sporulation-specific protein 11 homologue n=1 Tax=... [more]
A0A6H5KRW2_9PHAE1.110e-6847.71TP6A_N domain-containing protein (Fragment) n=1 Ta... [more]
A0A485L555_9STRA9.330e-6040.82Aste57867_16293 protein n=1 Tax=Aphanomyces stella... [more]
A0A6A4Z7N9_9STRA1.670e-5840.29TP6A_N domain-containing protein n=2 Tax=Aphanomyc... [more]
A0A1V9YKA4_9STRA2.820e-5841.24TP6A_N domain-containing protein n=1 Tax=Achlya hy... [more]
A0A1W0A8B8_9STRA2.270e-5438.58TP6A_N domain-containing protein n=1 Tax=Thraustot... [more]
A0A7S2JQ12_9STRA2.290e-5237.46Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A067D4V8_SAPPC2.600e-5239.48TP6A_N domain-containing protein n=2 Tax=Saprolegn... [more]
A0A8K1C609_PYTOL3.760e-5240.53Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_170contigContig_170:312705..316620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|178427|e_gw1.170.43.1
BRITEko00000,ko00001,ko03400
KEGG Pathwayko04113,map04113
KEGG koko:K10878
DescriptionDNA topoisomerase type II (ATP-hydrolyzing) activity
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1697@1|root,KOG2795@2759|Eukaryota
Evalue7.61e-75
Seed ortholog2880.D7G356
Hectar predicted targeting categorymitochondrion
TranscriptId178749
TrackFilteredModels1
ProteinId178427
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178427gene_15277Tribonema minus UTEX_B_3156 geneContig_170 312705..316620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178427Trimin1|178427|e_gw1.170.43.1Tribonema minus UTEX_B_3156 polypeptideContig_170 312705..316620 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15277_5exon_15277_5Tribonema minus UTEX_B_3156 exonContig_170 312705..312807 -
exon_15277_4exon_15277_4Tribonema minus UTEX_B_3156 exonContig_170 313418..313503 -
exon_15277_3exon_15277_3Tribonema minus UTEX_B_3156 exonContig_170 314121..314294 -
exon_15277_2exon_15277_2Tribonema minus UTEX_B_3156 exonContig_170 315358..315526 -
exon_15277_1exon_15277_1Tribonema minus UTEX_B_3156 exonContig_170 316343..316620 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15277CDS_15277Tribonema minus UTEX_B_3156 CDSContig_170 316343..316620 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15277 ID=mRNA_15277|Name=jgi.p|Trimin1|178427|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=810bp|location=Sequence derived from alignment at Contig_170:312705..316620- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCTGCGCAGCGCGGCGGCGCTGCTGCGCGGCGCCAAGACGGCGAC
GCAGCGCGAGCTCTACTACATGGACACGAACCTCTTTGCCGGCGGCCAGG
CGCAGTGCAACGCCGCCATCCTCACCGTCTCGGCGCTGCTGCGCGAGCCG
CGGCACTGCCTGGGCGTGGTTGCGAGCTCGCGCGGCTTCTACACGGGGCG
CCTGCGCACGCGCCACGCGGCCGGCGGCGGCGGCGGCGGCGGCGACGGCG
GCGGCGGCGGCGACTGGCACGACCCAAGGACCGCCGGCGGCACCGGCGCG
AGCGTGAACAGCGACTGGATCTCGCACGCGCTCGAGGCGGAGTCGGACGC
GCAGTTCCTGCTGGTGGTGGAGAAGGACGGCGCGTTCGCGCGCCTGTCCG
AGGACCGCTTCTACGACCGCCTGCCGTGCATCATCGTCACGGGACAGGGA
TTCCCCCCCGTGGCGGTGCGCGCCATGGTGCGCGCGCTGCAGTCAGCGCT
CAACCTCCCGGCGTACGGCCTCGTCGACTGCGGCCCCTTTGGCCTCTCGC
TGCTGCTCACGTACGTGCACGGCGGCGCGCGCATGGGCGAGCAGGCGGCG
CACTACACCGCGGACGTCAAGTGGCTGGGGCTGCGGCCCTCCCAGCTGGA
TGCGCTGGACCTGCCGGCTCAGGCGTACGCGCCGCAGAGCGACAACGACC
AGCGCAGGGCGCGCACGCTGGCCGAATCCATCCATGTTACGGCGCGGCCC
GAGCTCGAGGCGGAGGTCGACTACTGGTCGCGCGGCGGCTACAAGGTATG
TATCGGGTGA
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protein sequence of jgi.p|Trimin1|178427

>Trimin1|178427|e_gw1.170.43.1 ID=Trimin1|178427|e_gw1.170.43.1|Name=jgi.p|Trimin1|178427|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=270bp
MVLRSAAALLRGAKTATQRELYYMDTNLFAGGQAQCNAAILTVSALLREP
RHCLGVVASSRGFYTGRLRTRHAAGGGGGGGDGGGGGDWHDPRTAGGTGA
SVNSDWISHALEAESDAQFLLVVEKDGAFARLSEDRFYDRLPCIIVTGQG
FPPVAVRAMVRALQSALNLPAYGLVDCGPFGLSLLLTYVHGGARMGEQAA
HYTADVKWLGLRPSQLDALDLPAQAYAPQSDNDQRRARTLAESIHVTARP
ELEAEVDYWSRGGYKVCIG*
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mRNA from alignment at Contig_170:312705..316620-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15277 ID=mRNA_15277|Name=jgi.p|Trimin1|178427|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3916bp|location=Sequence derived from alignment at Contig_170:312705..316620- (Tribonema minus UTEX_B_3156 )
ATGGTCCTGCGCAGCGCGGCGGCGCTGCTGCGCGGCGCCAAGACGGCGAC GCAGCGCGAGCTCTACTACATGGACACGAACCTCTTTGCCGGCGGCCAGG CGCAGTGCAACGCCGCCATCCTCACCGTCTCGGCGCTGCTGCGCGAGCCG CGGCACTGCCTGGGCGTGGTTGCGAGCTCGCGCGGCTTCTACACGGGGCG CCTGCGCACGCGCCACGCGGCCGGCGGCGGCGGCGGCGGCGGCGACGGCG GCGGCGGCGGCGACTGGCACGACCCAAGGTGACTCGCTCGCTGTGGTGCT GTGCGGCGCGCGCACGCGAGATGCATGCGTGCATCCGGCGAAGCGATCGT CTGCTGGCGAGTGAGTGGCTGCCGCAGCACAGGCCACCGCCGCGCTGCCT GACGACTGCTCGTGTGCGCACACGGCTGCTCGCTTGCGCACAGGCTGGTA TGTATATGTATATGAGCTGCGCGGACGTTAAGCTGTCGATGATGTCGCAG ATCATGGTCGAGCTAGGCGCCTCCCTGTACCAGCTCTCTGCCCCGCGCTC ATGGGCTGGATGCACTCACGATCTGCCCGGATGAGCCACAATCAATGGTC GTGCTGTGGGTCAACCAGGCATAGGTTGGATAGTTGGAACAGTCACATAC TGACCCCGCCGCCGCAGCAGCTTTCTGACCGGCGCAGTCTGCATGCACAT GGACTATGCGTAAGCTGCGTGCCTGACTGCCTCATTTGCCTCGCGACGGA ACCTGTGATGGGGCGAGTCGACAGGCGGCGACGATCCGCTGAATCGCGCG CGCACATTGAATAGTATGGCATGCGCACTCCTACCACAGAACGCACCGGT GCCGGGGCGCGGCCGCTGGCGGCGCAATCGCCAGCGCACTGTTGCTGCAG ACCTCGCAGCACGTAGACTGCACCAAAGTTCATGCATCCCACTTTGAGGT TGTGTCGCGCGTGCACACGCGGCGCTGACGCGGCAATGCGCGCGTCGCGC TGGGAAGCGGCTCTACAAACAAGAGACCAGAAATTTCCACATGCGGCAGC ACGAAAAACTTGAATGAATGAAATGAATTCCTCGCCGCGTGCAGGACCGC CGGCGGCACCGGCGCGAGCGTGAACAGCGACTGGATCTCGCACGCGCTCG AGGCGGAGTCGGACGCGCAGTTCCTGCTGGTGGTGGAGAAGGACGGCGCG TTCGCGCGCCTGTCCGAGGACCGCTTCTACGACCGCCTGCCGTGCATCAT CGTCACGGGACAGGTACGCCATGTATGGCACTCTAAAGGTGTTCACAAGA CACATGCGGATTATGGCAAGAAGTTGGACATCCACCATCTAGGCTTTTTC GCACCCTACGCGAGAATTGAATATGTATGTACGAACAGAGGACGGCGGCT TTGCATCTTAGGTGCGTATGTTCGGGCGCCACTCGGAGAGCCGCTCTGTA CTATGACTTGTCGTCGCGGGGCAGGTACGTACTTCTTGAAGTACTTACTT CGTACAAGTAGAGGTCGGCTCCAGTGCGCTGTTGTCTTGGGCCATGTGGC GCGGCATTTGCACGGCTTCACGCAAGGGCGACGCGAGCTCCGTCGCGGCG CTTCGCCGACGCCAACGCCGTCCTCCAACTCTCGGCGCACCCGTCTCAGC ATGCTTCGCGCCGCGCGCCGTCGCCACGGGCGCCCTATACGACCGATGGA GTTTACGGCGCGGTGCTTGCTCAGCGTCACTGCTCGCTGCTGTGCGAGTG CGGCGCTCGCCTGAGCACTGTCACAAATAAAATCTGGCCGTCGTCTTTTG CTGATGACGCTCAGCGTAACTGTCATCAGCAGCATGAGCGACGCGGCAGT GCTCTGCGCCTCGGGCGTCGCGGTGGCGGCACGCGTCACCGTGGTGCAAG CGCTGGCGACCACCGGAGTCCGCGGCGGGTATTGAGATCGCTCCGTCCCC TCAAATGATTGGTCGAGATCACATGAACATCCCGCTCGCCGCTCGCGTCC CCTCAATTGATCAGTCGAGATTCACATGTTCATCCCCCTCGTGTGATCGT TGCTGTGAGACATTTCACAGGCCGACCGCGTCGATACGCCCCTGAACACA GCTTCCGCGCCCTTGCGTTACTTTTGAATCGCTAGCGCAGTATTATAAAT CCTGCCCCCACTCGTACTCTGAAATGACAACGTCGCACTTGTATGTACGC CCCTCGTGTGCGCCGCAGGGGTTCCCCCGCGCACTGCAGTCCGCGCTCAA CCTCATTTGTGCACCCCCGAGTATATGTATGTATACATTTACACCCCCAC ACTGGATGCTTCGCCCCGCATCGCAGGGATTCCCCCCCGTGGCGGTGCGC GCCATGGTGCGCGCGCTGCAGTCAGCGCTCAACCTCCCGGCGTACGGCCT CGTCGACTGCGGCCCCTTTGGCCTCTCGCTGCTGCTCACGTACGTGCACG GCGGCGCGCGCATGGGCGAGCAGGCGGCGCACTACACCGCGGACGTCAAG GTGTGTCACCGCCGTGGGCTTTCCAACCTCAAGTATGTGGGTGGGACTTC AAGTGGGAACTCTGCCGCTGCCGAAGAAGCACACTGGTTCCCTGATCTCA GTCTCGCTTTTGGCCATGCTCATAGATCTTTCATGCTTATAACAATGCCA CCGGCCAGTGCCGTGGGAGCGAGTCTCGTGGGCCATACCACCAGCGTTAA CATGCGCCCGGTCGCTGCTGCCAACGGGCGGTCGGCCCCGTTTCTTTAGA CATGACCTACTTCATCAAAGCAGTTTGGTGGACTTGCTGCTTTCGTATCG AGTCGGATGTGCGCCTTTCCCCGCACATGGTGAGTGTCCCCGAGGACGGT GACATACTGCAACTTCAAGTCACGCTGTCGCGCGTTGAAAGTTCACCGGC TCCGCGTGGTTCAGGCGTCGGACGGCCCGGACGCTTGTGCACGTGTTCAC AGGTCTTTGCCTGCAGTCGCCTCTGCACGCTCTGCGGCGGCGGTCACAAT GTCCCCGTATCCTACGTCCCTGTACATGACGGCACGCACGCAAATGGGCA GCCTCGTCTCTGGGGCCCCCTCTCAACTGTAGCTTCAATGCGCCCGCGCC GCTTTGTGTCGCTGCAGTGGCTGGGGCTGCGGCCCTCCCAGCTGGATGCG CTGGACCTGCCGGCTCAGGCGTACGCGCCGCAGAGCGACAACGACCAGCG CAGGTACTCCGTGACGCGACAGCGCGGTTGTTGTTGCTCTTGGTGTGTCA TAACAACAGCGCGGCCATTGCACGTGCGTGTCGGCTGCTGCTCTGTGGCG CTCGTTGAAGTTGTCTGGTCGATGATGTTTCAAACACTCTGCACTGCGCA CACGGAGCGCACATGACGCGCTTTCTCCGGTGGAGGTGGCAAAGCACGCC GTATCGCATCACGTTGCACGCCGCCACCTTCAATGTGAGCGCCATGGCTG ACCAGCATGGGTGCCTGACCCGGAAGCGCTTCGTGACAGAGATACGCCGC TAAGATGCTGATGTGATATGCATGCCACGTACTCAATGTCATAGTTGAAC TTGAGAGCAAGCATCATTGTCGCCGCATCAACGCGTGACTTTCCAATAGG CATATGCTCATGAGCTGGGGCATTATCGCGGCTCCGCCAGCTCTTCGAAC CAACGGAAGATATTGCACATCAAATGTCTGCCAGGAGCAGGTCTGGCCAC CTGGCTTGTGTACCCCCGGCGTGTCAGGCCGAGCAAGCGCGCGTGCCAGG CGTAGCTCTCACGCCCGCCCCGCTGCTAAGCAAACCTCACCCTAACCCTA ACCTAAACCTCAGGGCGCGCACGCTGGCCGAATCCATCCATGTTACGGCG CGGCCCGAGCTCGAGGCGGAGGTCGACTACTGGTCGCGCGGCGGCTACAA GGTATGTATCGGGTGA
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Coding sequence (CDS) from alignment at Contig_170:312705..316620-

>mRNA_15277 ID=mRNA_15277|Name=jgi.p|Trimin1|178427|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=810bp|location=Sequence derived from alignment at Contig_170:312705..316620- (Tribonema minus UTEX_B_3156 )
ATGGTCCTGCGCAGCGCGGCGGCGCTGCTGCGCGGCGCCAAGACGGCGAC
GCAGCGCGAGCTCTACTACATGGACACGAACCTCTTTGCCGGCGGCCAGG
CGCAGTGCAACGCCGCCATCCTCACCGTCTCGGCGCTGCTGCGCGAGCCG
CGGCACTGCCTGGGCGTGGTTGCGAGCTCGCGCGGCTTCTACACGGGGCG
CCTGCGCACGCGCCACGCGGCCGGCGGCGGCGGCGGCGGCGGCGACGGCG
GCGGCGGCGGCGACTGGCACGACCCAAGGACCGCCGGCGGCACCGGCGCG
AGCGTGAACAGCGACTGGATCTCGCACGCGCTCGAGGCGGAGTCGGACGC
GCAGTTCCTGCTGGTGGTGGAGAAGGACGGCGCGTTCGCGCGCCTGTCCG
AGGACCGCTTCTACGACCGCCTGCCGTGCATCATCGTCACGGGACAGGGA
TTCCCCCCCGTGGCGGTGCGCGCCATGGTGCGCGCGCTGCAGTCAGCGCT
CAACCTCCCGGCGTACGGCCTCGTCGACTGCGGCCCCTTTGGCCTCTCGC
TGCTGCTCACGTACGTGCACGGCGGCGCGCGCATGGGCGAGCAGGCGGCG
CACTACACCGCGGACGTCAAGTGGCTGGGGCTGCGGCCCTCCCAGCTGGA
TGCGCTGGACCTGCCGGCTCAGGCGTACGCGCCGCAGAGCGACAACGACC
AGCGCAGGGCGCGCACGCTGGCCGAATCCATCCATGTTACGGCGCGGCCC
GAGCTCGAGGCGGAGGTCGACTACTGGTCGCGCGGCGGCTACAAGGTATG
TATCGGGTGA
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