mRNA_1525 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|141257
Unique NamemRNA_1525
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Match: A0A835Z690_9STRA (TM2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z690_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.930e-58
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1
Query:    1 CECDTGYVSIDSEACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 261
            CECDTGYVSIDSEACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL
Sbjct:    1 CECDTGYVSIDSEACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 87          
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Match: A0A836C9M7_9STRA (TM2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9M7_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.520e-45
Identity = 68/87 (78.16%), Postives = 75/87 (86.21%), Query Frame = 1
Query:    1 CECDTGYVSIDSEACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 261
            CEC+TGYVS DS  C+Y QKSELV FLLSFFV ++GADWFYLA GDAGYIV GVFKL+  GGFG+WWL+DWIRILA AFPDGNGV L
Sbjct:   27 CECNTGYVSTDSLQCNYAQKSELVTFLLSFFVGYLGADWFYLADGDAGYIVAGVFKLIITGGFGIWWLIDWIRILANAFPDGNGVEL 113          
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Match: A0A816GSD5_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A816GSD5_9BILA)

HSP 1 Score: 119 bits (299), Expect = 6.720e-33
Identity = 57/89 (64.04%), Postives = 70/89 (78.65%), Query Frame = 1
Query:    1 CECDT-GYVSIDS-EACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 261
            C C T GYV++DS + C+Y+QK +LVAFLLSF V   GADWFYLA+G+ GYI  GVFKL+T GG G+W LVDWIR+L  +FPDG GV+L
Sbjct:   48 CNCTTAGYVTVDSSKPCAYQQKKKLVAFLLSFLVGVFGADWFYLAAGNGGYIAAGVFKLLTFGGLGIWALVDWIRVLTDSFPDGQGVSL 136          
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Match: A0A813W5K7_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A813W5K7_ADIRI)

HSP 1 Score: 119 bits (298), Expect = 7.780e-33
Identity = 51/89 (57.30%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    1 CECDTGYVSIDSEA--CSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 261
            C+CD G+++   +   C+Y QKS+L +FLLSFF+   GADW+YL+ G+ GYI   +FK++T+GGFG+WWLVDWIRIL  AFPDGNG  L
Sbjct:   40 CKCDRGWINSKDQTNYCNYEQKSQLASFLLSFFLGLFGADWYYLSVGNGGYIAGAIFKMLTLGGFGIWWLVDWIRILTNAFPDGNGQPL 128          
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Match: A0A814FBL4_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A814FBL4_ADIRI)

HSP 1 Score: 118 bits (295), Expect = 2.650e-32
Identity = 58/89 (65.17%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 CECDT-GYVSIDS-EACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 261
            C C T GYV++ S + C+Y QK +L AFLLSFF+   GADWFYLA+G  GYI  GVFKL+T+GGFGVW L DWIRIL   FPDG GVAL
Sbjct:   48 CNCTTSGYVTVQSSQPCAYEQKKKLNAFLLSFFIGCFGADWFYLAAGSGGYITAGVFKLLTLGGFGVWALADWIRILTDNFPDGQGVAL 136          
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Match: A0A819MKF4_9BILA (Hypothetical protein n=2 Tax=Rotaria TaxID=231623 RepID=A0A819MKF4_9BILA)

HSP 1 Score: 117 bits (293), Expect = 6.150e-32
Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 CECDTGYV--SIDSEACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 261
            C C+ G+      S+ C+Y+QKS+L AFLLSFF   +GADWFYL+ G+ GYI  GVFKL+T+GG G+WWLVDWIRIL  AF DG GVAL
Sbjct:   51 CSCNQGWTFPRDGSDRCTYQQKSKLAAFLLSFFAGGLGADWFYLSVGNGGYIAAGVFKLLTLGGIGIWWLVDWIRILTNAFLDGQGVAL 139          
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Match: A0A836CJ53_9STRA (TM2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ53_9STRA)

HSP 1 Score: 115 bits (288), Expect = 8.480e-32
Identity = 53/91 (58.24%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    1 CECDTGYVSIDSEA----CSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 261
            CECD  Y++ + +     C+Y QKS+L  FL+SFFV  +G DWFYLA G+  YIV GV KL+T GGFG+WWLVD+IR+L  AFPDGN V L
Sbjct:    1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPL 91          
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Match: A0A835YS76_9STRA (TM2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS76_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.870e-31
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 1
Query:    1 CECDTGYVSIDS-EACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 261
            CECD GY++ +    C Y QKS+L  FL+SFFV ++G DWFYLA G+  YIV GV KL+T GGFG+WW+VD+IR++  AFPDGN + L
Sbjct:   43 CECDGGYITREPYPPCDYHQKSQLTTFLISFFVGWLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWIVDFIRVIVNAFPDGNDLPL 130          
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Match: A0A814T286_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A814T286_9BILA)

HSP 1 Score: 115 bits (289), Expect = 2.220e-31
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 1
Query:    1 CECDTGYVSID-SEACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 261
            C C  G+++ D S  C+Y+QK +L AFLLSFFV F G DWFYL+  +  YI+ G+ KL+T+GGFG+WW+VDWIR+LA AF DGNG  L
Sbjct:   47 CICSKGWITTDLSTGCTYQQKLKLTAFLLSFFVGFFGVDWFYLSVSNPAYIIAGIIKLITLGGFGIWWIVDWIRLLADAFLDGNGFPL 134          
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Match: A0A814Q567_ADIRI (Hypothetical protein n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A814Q567_ADIRI)

HSP 1 Score: 115 bits (289), Expect = 2.290e-31
Identity = 56/89 (62.92%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 CECDTG--YVSIDSEACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 261
            C C  G  Y    +  CSY+QKS+L AFLLSFF+  +GADWFYL+ G+AGYIV GVFKL+T+GG G+WWLVDWIRIL  +F DG GV L
Sbjct:   48 CICHRGWTYGRDGATQCSYQQKSKLAAFLLSFFLGGLGADWFYLSVGNAGYIVAGVFKLLTLGGIGIWWLVDWIRILTNSFLDGQGVGL 136          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z690_9STRA1.930e-58100.00TM2 domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A836C9M7_9STRA1.520e-4578.16TM2 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A816GSD5_9BILA6.720e-3364.04Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 ... [more]
A0A813W5K7_ADIRI7.780e-3357.30Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A814FBL4_ADIRI2.650e-3265.17Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]
A0A819MKF4_9BILA6.150e-3261.80Hypothetical protein n=2 Tax=Rotaria TaxID=231623 ... [more]
A0A836CJ53_9STRA8.480e-3258.24TM2 domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A835YS76_9STRA1.870e-3157.95TM2 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A814T286_9BILA2.220e-3157.95Hypothetical protein n=3 Tax=Rotaria sp. Silwood1 ... [more]
A0A814Q567_ADIRI2.290e-3162.92Hypothetical protein n=3 Tax=Adineta ricciae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1326980..1327240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|141257|gw1.18.178.1
DescriptionMortierella verticillata NRRL 6337
COG categoryS
Max annot lvl4751|Fungi
EggNOG OGsKOG4272@1|root,KOG4272@2759|Eukaryota,39QUC@33154|Opisthokonta,3Q6V2@4751|Fungi,1GUKY@112252|Fungi incertae sedis
Evalue1.05e-11
Seed ortholog78898.MVEG_09373T0
Hectar predicted targeting categorysignal anchor
TranscriptId141579
TrackFilteredModels1
ProteinId141257
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|141257gene_1525Tribonema minus UTEX_B_3156 geneContig_18 1326980..1327240 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1525_1exon_1525_1Tribonema minus UTEX_B_3156 exonContig_18 1326980..1327240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1525CDS_1525Tribonema minus UTEX_B_3156 CDSContig_18 1326980..1327240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|141257Trimin1|141257|gw1.18.178.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1326980..1327240 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1525 ID=mRNA_1525|Name=jgi.p|Trimin1|141257|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=261bp|location=Sequence derived from alignment at Contig_18:1326980..1327240- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGTGAATGTGACACGGGGTATGTGTCTATCGACAGTGAGGCGTGCAGCTA
CCGACAGAAATCAGAGCTGGTAGCATTCCTGCTGTCCTTTTTTGTAGTTT
TTGTTGGTGCAGACTGGTTCTATCTGGCAAGTGGAGATGCTGGCTACATT
GTCACTGGAGTATTCAAACTGGTAACCGTAGGAGGATTTGGAGTGTGGTG
GCTGGTGGATTGGATCCGGATATTAGCGGGTGCGTTTCCAGATGGTAATG
GCGTTGCACTG
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protein sequence of jgi.p|Trimin1|141257

>Trimin1|141257|gw1.18.178.1 ID=Trimin1|141257|gw1.18.178.1|Name=jgi.p|Trimin1|141257|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=87bp
CECDTGYVSIDSEACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYI
VTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL
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mRNA from alignment at Contig_18:1326980..1327240-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1525 ID=mRNA_1525|Name=jgi.p|Trimin1|141257|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=261bp|location=Sequence derived from alignment at Contig_18:1326980..1327240- (Tribonema minus UTEX_B_3156 )
TGTGAATGTGACACGGGGTATGTGTCTATCGACAGTGAGGCGTGCAGCTA CCGACAGAAATCAGAGCTGGTAGCATTCCTGCTGTCCTTTTTTGTAGTTT TTGTTGGTGCAGACTGGTTCTATCTGGCAAGTGGAGATGCTGGCTACATT GTCACTGGAGTATTCAAACTGGTAACCGTAGGAGGATTTGGAGTGTGGTG GCTGGTGGATTGGATCCGGATATTAGCGGGTGCGTTTCCAGATGGTAATG GCGTTGCACTG
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Coding sequence (CDS) from alignment at Contig_18:1326980..1327240-

>mRNA_1525 ID=mRNA_1525|Name=jgi.p|Trimin1|141257|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=261bp|location=Sequence derived from alignment at Contig_18:1326980..1327240- (Tribonema minus UTEX_B_3156 )
TGTGAATGTGACACGGGGTATGTGTCTATCGACAGTGAGGCGTGCAGCTA
CCGACAGAAATCAGAGCTGGTAGCATTCCTGCTGTCCTTTTTTGTAGTTT
TTGTTGGTGCAGACTGGTTCTATCTGGCAAGTGGAGATGCTGGCTACATT
GTCACTGGAGTATTCAAACTGGTAACCGTAGGAGGATTTGGAGTGTGGTG
GCTGGTGGATTGGATCCGGATATTAGCGGGTGCGTTTCCAGATGGTAATG
GCGTTGCACTG
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