mRNA_15242 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|178471 vs. uniprot
Match: A0A836CII6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CII6_9STRA) HSP 1 Score: 759 bits (1959), Expect = 5.420e-275 Identity = 438/438 (100.00%), Postives = 438/438 (100.00%), Query Frame = 1 Query: 1 AARAGHRKSLQWLRNAGCGWDWRTCTEAARRGDISVLRWAANAGAPVFPSRKDIRALGLPGLLAVRGPQAAAKAGHLHILKWFDRVYHLSDVTNYKLLKLAAQEGHLAVVQWLCSNGVLRDAQTNGVPRDAQACRAAVRGGQLHVLQFLRHIGCRWDKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGAVLLYAGERGFPWGSHKAAACVELIHRDYMPVVAAKGDSIEVLKYVIENGCEWDQRVCSEAAGRGDVQMLDWAVANGAPCDYAEVTKRAWRAGRTAQLEVTKWLHTRGEDVKPLLVDAALAGHVPLLQWGRRSLGFSTTDVPALVRAAAKGGSVEVLAWMHAAGLLMRAHDDLRQLATSTAAAXXXXXXXXXXXXXXXXXXXXXXXXTNAIKEAQVEVIEWTLPSGGAWDESICHRPTCA 1314 AARAGHRKSLQWLRNAGCGWDWRTCTEAARRGDISVLRWAANAGAPVFPSRKDIRALGLPGLLAVRGPQAAAKAGHLHILKWFDRVYHLSDVTNYKLLKLAAQEGHLAVVQWLCSNGVLRDAQTNGVPRDAQACRAAVRGGQLHVLQFLRHIGCRWDKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGAVLLYAGERGFPWGSHKAAACVELIHRDYMPVVAAKGDSIEVLKYVIENGCEWDQRVCSEAAGRGDVQMLDWAVANGAPCDYAEVTKRAWRAGRTAQLEVTKWLHTRGEDVKPLLVDAALAGHVPLLQWGRRSLGFSTTDVPALVRAAAKGGSVEVLAWMHAAGLLMRAHDDLRQLATSTAAAXXXXXXXXXXXXXXXXXXXXXXXXTNAIKEAQVEVIEWTLPSGGAWDESICHRPTCA Sbjct: 1 AARAGHRKSLQWLRNAGCGWDWRTCTEAARRGDISVLRWAANAGAPVFPSRKDIRALGLPGLLAVRGPQAAAKAGHLHILKWFDRVYHLSDVTNYKLLKLAAQEGHLAVVQWLCSNGVLRDAQTNGVPRDAQACRAAVRGGQLHVLQFLRHIGCRWDKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGAVLLYAGERGFPWGSHKAAACVELIHRDYMPVVAAKGDSIEVLKYVIENGCEWDQRVCSEAAGRGDVQMLDWAVANGAPCDYAEVTKRAWRAGRTAQLEVTKWLHTRGEDVKPLLVDAALAGHVPLLQWGRRSLGFSTTDVPALVRAAAKGGSVEVLAWMHAAGLLMRAHDDLRQLATSTAAAXXXXXXXXXXXXXXXXXXXXXXXXTNAIKEAQVEVIEWTLPSGGAWDESICHRPTCA 438
BLAST of jgi.p|Trimin1|178471 vs. uniprot
Match: A0A836CJR5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJR5_9STRA) HSP 1 Score: 111 bits (278), Expect = 7.730e-23 Identity = 72/179 (40.22%), Postives = 92/179 (51.40%), Query Frame = 1 Query: 610 AGERGFPWGSHKAAACVELIHRDYMPVVAAKGDSIEVLKYVIENGCEWD------QRVCSEAAGRGDVQMLDWAVANGAPCDYAEVTKRAWRAGRTAQLEVTKWLHTRGEDVKPLLVDAALAGHVPLLQWGRRSLGFSTTDVPALVRAAAKGGSVEVLAWMHAAGLLMRAHDDLRQLAT 1128 AG RG WG ++P +A +G ++ LKYV+ENGC W + C AA +GD++MLD+ +A GA CD DV+PLL AAL+G V LLQW S+G + D+ LVR+A G EVLAWMH GLL+RAHD LRQ AT Sbjct: 290 AGGRGIIWG--------------HVPTLAVEGGNVAALKYVLENGCAWGYGKYGIESACLRAAEKGDIEMLDYLLAQGARCD----------------------------DVQPLLDIAALSGDVGLLQWSH-SVG-ADLDLQTLVRSAVSHGHFEVLAWMHTEGLLLRAHDGLRQHAT 424
BLAST of jgi.p|Trimin1|178471 vs. uniprot
Match: A0A835ZF11_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF11_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 4.790e-16 Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 1 Query: 754 DQRVCSEAAGRGDVQMLDWAVANGAPCDYAEVTKRAWRAGRTAQLEVTKWLHTRGEDVKPLLVDAALAGHVPLLQWGRRSLGFSTTD--VPALVRAAAKGGSVEVLAWMHAAGLLMR 1098 D VC AAGRGDV+ML+WA+A+GAPC YA ++ A G A V KWL RG D+ LL+ G + G + D AL AAA+ G VEVLAWMHAAG L+R Sbjct: 360 DATVCEIAAGRGDVEMLEWALASGAPCRYAALSSSASATGHVA---VAKWLRARGRDIGALLLXXXXXXXXXXXXXGLTA-GVAAGDDAAHALACAAAEAGRVEVLAWMHAAGRLVR 472
BLAST of jgi.p|Trimin1|178471 vs. uniprot
Match: A0A2J7ZW85_9CHLO (Ankyrin repeat domain-containing protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZW85_9CHLO) HSP 1 Score: 77.4 bits (189), Expect = 2.130e-11 Identity = 46/132 (34.85%), Postives = 72/132 (54.55%), Query Frame = 1 Query: 694 AAKGDSIEVLKYVIENGCEWDQRVCSEAAGRGDVQMLDWAVANGAPCDYAEVTKRAWRAGRTAQLEVTKWLHTRGEDVKPLLVD-AALAGHVPLLQWGRRSLGFSTTDVPALVRAAAKGGSVEVLAWMHAAG 1086 AA D++ L+++ + ++D V + AAG G+V+ L++ + G +YAE WRA R + V + LH RG + V AAL H+P + W LG +T + AAA+ GS+E+LAW+ A G Sbjct: 304 AATPDALSRLQWLRQRSYQFDSWVAASAAGAGNVEALEYVLGQGVK-EYAEQRGMMWRAARGGHVAVMEVLHARGVPISENAVCVAALNAHLPAVAWLVERLGAATALTTDVFEAAARAGSMELLAWLRARG 434
BLAST of jgi.p|Trimin1|178471 vs. uniprot
Match: A0A2J7ZJU4_9CHLO (Ankyrin repeat domain-containing protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZJU4_9CHLO) HSP 1 Score: 67.4 bits (163), Expect = 3.210e-8 Identity = 85/383 (22.19%), Postives = 129/383 (33.68%), Query Frame = 1 Query: 4 ARAGHRKSLQWLR-NAGCGWDWRTCTEAARRGDISVLRWAANAGAPVFPSRKDIRALGLPGLLAVRGPQAAAKAGHLHILKWF-------DRVYHLSDVTNYKLLKLAAQEGHLAVVQWLCSNGVLRDAQTNGVPRDAQACRA----AVRGGQLHVLQFLRH----------IGCRWDKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGAVLLYAGERGFPWGSHKAAACVELIHRDYMPVVAAKGDSIEVLKYVIENGCEWDQRVCSEAAGRGDVQMLDWAVANGAPCDYAEVTKRAWRAGRTAQLEVTKWLHTRGEDVKPLLVDAALAGHVPLLQWGRRSLGFSTTDVPALVRAAAKGGSVEVLAWMHAAG 1086 A +G ++L+WL + GC + AA G + V RW ++D G A+ GP+AAA AG ++W D H + +L AA+ GH+ ++ WL Q G+ D A A A +G L LQ L H +GC L + RG+PWG A AA +++VL+Y++ GC ++ AAG G + L A+ + +L AA GH+P++ W S P+L+ A + GS E+LAW+ G Sbjct: 97 AASGCLENLEWLAAHVGCSLTGQVFDAAAAAGRLDVCRWIL---------QQDCDGQGW----ALGGPEAAAGAGQRATVEWLLANTTKQDGSGHNVPASRARLAHSAARGGHVGLMDWLL--------QRKGLEHDGPAAAALLGEAAKGCDLPTLQRLYHTYFADSQAARLGCVLISAVGSPTPDWKAKVEWLEGLGAAARPQYCPCTTAVSCPDALVRLTWLRGRGYPWGWQTTQA-------------AADAGNLDVLRYLLAEGCPVEESTLGTAAGSGQLAALQALHAHSGAFTWEPF----------------------------VLARAARGGHLPVVAWLLEQQLVSLQQRPSLLPEATQSGSTELLAWLRDRG 417
BLAST of jgi.p|Trimin1|178471 vs. uniprot
Match: A0A835YTI3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTI3_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 9.300e-6 Identity = 34/110 (30.91%), Postives = 50/110 (45.45%), Query Frame = 1 Query: 10 AGHRKSLQWLRNAGCGWDWRTCTEAARRGDISVLRWAANAGAPVFPSRKDIRALGLPGLLAVRGPQAAAKAGHLHILKWFDRVYHLSDVTNYKLLKLAAQEGHLAVVQWL 339 AG +LQ+LR G W+ T +EAA G I V+ W NAGAP L+ + AA+ G L+W + + + + AA+ G LA++ WL Sbjct: 92 AGELPALQFLRAHGSSWNDTTFSEAAANGQIGVMEWLVNAGAP---------------LMVCSAYRGAARRGQRASLEWLEAAFEDETPWDESIFAYAAESGDLALLHWL 186
BLAST of jgi.p|Trimin1|178471 vs. uniprot
Match: A0A835ZGN6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGN6_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 6.000e-5 Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 1 Query: 1 AARAGHRKSLQWLRNAGCGWDWRTCTEAARRGDISVLR 114 AAR+G LQWLR+ C WD R CTEAARRGDI++LR Sbjct: 107 AARSGQLPLLQWLRDGDCEWDNRVCTEAARRGDIAMLR 144 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178471 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15242 ID=mRNA_15242|Name=jgi.p|Trimin1|178471|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1317bp|location=Sequence derived from alignment at Contig_170:90692..92008- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCGGCTCGGGCTGGCCATCGCAAGTCACTGCAGTGGCTCCGAAACGCTGGback to top protein sequence of jgi.p|Trimin1|178471 >Trimin1|178471|e_gw1.170.12.1 ID=Trimin1|178471|e_gw1.170.12.1|Name=jgi.p|Trimin1|178471|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=439bp AARAGHRKSLQWLRNAGCGWDWRTCTEAARRGDISVLRWAANAGAPVFPSback to top mRNA from alignment at Contig_170:90692..92008- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15242 ID=mRNA_15242|Name=jgi.p|Trimin1|178471|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1317bp|location=Sequence derived from alignment at Contig_170:90692..92008- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_170:90692..92008- >mRNA_15242 ID=mRNA_15242|Name=jgi.p|Trimin1|178471|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1317bp|location=Sequence derived from alignment at Contig_170:90692..92008- (Tribonema minus UTEX_B_3156 )back to top |