mRNA_15239 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|178431
Unique NamemRNA_15239
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|178431 vs. uniprot
Match: A0A835Z8Y6_9STRA (Actin-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y6_9STRA)

HSP 1 Score: 192 bits (487), Expect = 3.820e-62
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 VQVGCERFHAPELLFQPAIWDDDKAPKNARGLSDMICEAIMACNPEMRHDMVSHIIVHGATAHIKGLAKRIEVRCREGACVHVLERVAVR 270
            VQVGCERFHAPELLFQPAIWDDDKAPKNARGLSDMICEAIMACNPEMRHDMVSHIIVHGATAHIKGLAKRIEVRCREGACVHVLERVAVR
Sbjct:    1 VQVGCERFHAPELLFQPAIWDDDKAPKNARGLSDMICEAIMACNPEMRHDMVSHIIVHGATAHIKGLAKRIEVRCREGACVHVLERVAVR 90
[Close]
BLAST of jgi.p|Trimin1|178431 vs. uniprot
Match: A0A836CJJ8_9STRA (Actin-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJJ8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.190e-29
Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:    4 QVGCERFHAPELLFQPAIWDDDKAPKNARGLSDMICEAIMACNPEMRHDMVSHIIVHGATAHIKGLAKRIE 216
            +VGCE FHAPELLFQP +W DDKAPKNARGLSDM+ EAIM C+P++R +M S+IIVHGATA +KGL +RI+
Sbjct:   25 KVGCELFHAPELLFQPDLWVDDKAPKNARGLSDMLYEAIMKCDPDIRGEMFSNIIVHGATAQLKGLEERIK 95
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BLAST of jgi.p|Trimin1|178431 vs. uniprot
Match: D7FHM1_ECTSI (TiTiN family member (Ttn-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM1_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 2.530e-9
Identity = 32/90 (35.56%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:    1 VQVGCERFHAPELLFQPAIWDDDKAPKNARGLSDMICEAIMACNPEMRHDMVSHIIVHGATAHIKGLAKRIEVRCREGACVHVLERVAVR 270
            V++G ERFHAPE+LF P +W++      +R LS  + +A+   + + + DM+  I+V G +A + GL  R+E   +      + ERV VR
Sbjct: 1571 VKIGRERFHAPEILFTPGLWNEGGV---SRSLSQAVLDALAELDSDTKADMLDDIVVVGGSARMDGLGDRLEEDLKAMLPEWMSERVDVR 1657
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BLAST of jgi.p|Trimin1|178431 vs. uniprot
Match: A0A497NFU4_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A497NFU4_9ARCH)

HSP 1 Score: 59.7 bits (143), Expect = 1.710e-8
Identity = 29/68 (42.65%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:   16 ERFHAPELLFQPAIWDDDKAPKNARGLSDMICEAIMACNPEMRHDMVSHIIVHGATAHIKGLAKRIEV 219
            ERF APE+LF PA+   D+      G+ +M+ EAIMAC+ ++R DM  +I++ G T+   GL +R+E+
Sbjct:  159 ERFLAPEVLFTPALMGRDEL-----GVHEMVFEAIMACDVDVRRDMAENIVLTGGTSLFPGLKERLEL 221
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BLAST of jgi.p|Trimin1|178431 vs. uniprot
Match: A0A7S4DLC7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DLC7_HETAK)

HSP 1 Score: 55.8 bits (133), Expect = 4.730e-8
Identity = 27/71 (38.03%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:    4 QVGCERFHAPELLFQPAIWDDDKAPKNARGLSDMICEAIMACNPE-MRHDMVSHIIVHGATAHIKGLAKRI 213
            ++G E  HAPE+LFQP IW+      +  GL+++I E+I AC+ E ++ D++  II+ G T+ + G  +R+
Sbjct:   14 RLGPELVHAPEILFQPQIWEGSA---HEMGLTELIIESIKACDDEDIQKDLLKQIILIGQTSRLPGFDERV 81
[Close]
BLAST of jgi.p|Trimin1|178431 vs. uniprot
Match: A0A1V9XIQ0_9ACAR (Actin-related protein 2 n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9XIQ0_9ACAR)

HSP 1 Score: 58.2 bits (139), Expect = 7.180e-8
Identity = 30/85 (35.29%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:    1 VQVGCERFHAPELLFQPAIWDDDKAPKNARGLSDMICEAIMACNPEMRHDMVSHIIVHGATAHIKGLAKRIEVRCREGACVHVLE 255
            + VG ERF APE LFQP + D D     A+G+++M+   I A + ++R ++  HI++ G +    GL  R+E   ++    HVL+
Sbjct:  252 INVGRERFGAPEALFQPNLLDID-----AQGVAEMVFNTIQAADIDIRLELYKHIVLSGGSTMYPGLPSRLERELKQLYLEHVLK 331
[Close]
BLAST of jgi.p|Trimin1|178431 vs. uniprot
Match: A0A2G2Z6Z6_CAPAN (Actin-75 n=2 Tax=Capsicum TaxID=4071 RepID=A0A2G2Z6Z6_CAPAN)

HSP 1 Score: 56.6 bits (135), Expect = 7.460e-8
Identity = 24/71 (33.80%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:    1 VQVGCERFHAPELLFQPAIWDDDKAPKNARGLSDMICEAIMACNPEMRHDMVSHIIVHGATAHIKGLAKRI 213
            + +G ERFH PELLFQP++   ++      G+ +    +IM C+ ++R D+ ++I++ G +    G+AKR+
Sbjct:   42 INIGTERFHCPELLFQPSLLGMEET-----GIHEKAYNSIMRCDDDIRKDLFANIVLSGGSTMFPGIAKRM 107
[Close]
BLAST of jgi.p|Trimin1|178431 vs. uniprot
Match: A0A497NM33_9ARCH (Actin, cytoplasmic 2 n=3 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A497NM33_9ARCH)

HSP 1 Score: 55.8 bits (133), Expect = 4.710e-7
Identity = 27/67 (40.30%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:   16 ERFHAPELLFQPAIWDDDKAPKNARGLSDMICEAIMACNPEMRHDMVSHIIVHGATAHIKGLAKRIE 216
            ERF APE+LF P +   D+      GL ++I +AIMAC+ ++R DM+ +I++ G ++   GL +R+E
Sbjct:  273 ERFLAPEVLFSPGLIGRDEP-----GLHEIIFDAIMACDIDVRKDMIENIVLTGGSSMFPGLKERVE 334
[Close]
BLAST of jgi.p|Trimin1|178431 vs. uniprot
Match: A0A0D8XS75_DICVI (Actin (Fragment) n=1 Tax=Dictyocaulus viviparus TaxID=29172 RepID=A0A0D8XS75_DICVI)

HSP 1 Score: 54.3 bits (129), Expect = 4.930e-7
Identity = 25/71 (35.21%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:    1 VQVGCERFHAPELLFQPAIWDDDKAPKNARGLSDMICEAIMACNPEMRHDMVSHIIVHGATAHIKGLAKRI 213
            + +GCERF APE LFQP +   +     A GL +    +IM+C+ ++R D+ ++I++ G T    G+  R+
Sbjct:   35 ITIGCERFRAPESLFQPNLLGME-----ATGLHESCYNSIMSCDIDIRKDLYANIVLSGGTTMFPGITDRM 100
[Close]
BLAST of jgi.p|Trimin1|178431 vs. uniprot
Match: A0A7S3ZC30_9EUKA (Hypothetical protein n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S3ZC30_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 6.550e-7
Identity = 26/73 (35.62%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:    1 VQVGCERFHAPELLFQPAIW--DDDKAPKNARGLSDMICEAIMACNPEMRHDMVSHIIVHGATAHIKGLAKRI 213
            ++VG ER+ A E+LF P  +    D      RG+ +M+ E+I  C P++R D+ S I++ G T+ + GL +R+
Sbjct:  344 LEVGSERYEASEVLFNPGDFTISQDIGNYTFRGIPNMVIESINTCEPDIRRDLYSSIVLTGGTSLLPGLNERL 416
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178431 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8Y6_9STRA3.820e-62100.00Actin-domain-containing protein n=1 Tax=Tribonema ... [more]
A0A836CJJ8_9STRA1.190e-2971.83Actin-domain-containing protein n=2 Tax=Tribonema ... [more]
D7FHM1_ECTSI2.530e-935.56TiTiN family member (Ttn-1) n=1 Tax=Ectocarpus sil... [more]
A0A497NFU4_9ARCH1.710e-842.65Uncharacterized protein n=1 Tax=Candidatus Bathyar... [more]
A0A7S4DLC7_HETAK4.730e-838.03Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1V9XIQ0_9ACAR7.180e-835.29Actin-related protein 2 n=1 Tax=Tropilaelaps merce... [more]
A0A2G2Z6Z6_CAPAN7.460e-833.80Actin-75 n=2 Tax=Capsicum TaxID=4071 RepID=A0A2G2Z... [more]
A0A497NM33_9ARCH4.710e-740.30Actin, cytoplasmic 2 n=3 Tax=Candidatus Bathyarcha... [more]
A0A0D8XS75_DICVI4.930e-735.21Actin (Fragment) n=1 Tax=Dictyocaulus viviparus Ta... [more]
A0A7S3ZC30_9EUKA6.550e-735.62Hypothetical protein n=2 Tax=Lotharella TaxID=7481... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_170contigContig_170:60880..61152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|178431|e_gw1.170.6.1
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03032,ko03036,ko03400
KEGG ModuleM00296
KEGG Pathwayko03410,ko04210,ko04212,ko04214,ko04217,map03410,map04210,map04212,map04214,map04217
KEGG koko:K10798,ko:K11767
EC2.4.2.30
DescriptionATP binding
COG categoryZ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5277@1|root,KOG0676@2759|Eukaryota
Evalue4.15e-10
Seed ortholog2880.D7FHM1
Hectar predicted targeting categoryother localisation
TranscriptId178753
TrackFilteredModels1
ProteinId178431
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178431gene_15239Tribonema minus UTEX_B_3156 geneContig_170 60880..61152 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15239_1exon_15239_1Tribonema minus UTEX_B_3156 exonContig_170 60880..61152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15239CDS_15239Tribonema minus UTEX_B_3156 CDSContig_170 60880..61152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178431Trimin1|178431|e_gw1.170.6.1Tribonema minus UTEX_B_3156 polypeptideContig_170 60880..61152 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15239 ID=mRNA_15239|Name=jgi.p|Trimin1|178431|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_170:60880..61152+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGCAGGTCGGGTGCGAGCGCTTCCATGCGCCGGAGCTGCTCTTTCAGCC
CGCCATTTGGGACGACGACAAGGCGCCCAAGAACGCGCGTGGCCTCAGCG
ACATGATCTGCGAGGCCATCATGGCGTGCAATCCCGAGATGCGTCACGAC
ATGGTTTCCCACATCATCGTCCACGGGGCCACCGCGCACATCAAGGGGCT
CGCAAAACGGATAGAGGTACGATGCCGTGAGGGAGCTTGCGTGCATGTGT
TGGAGCGGGTCGCTGTGCGCTGA
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protein sequence of jgi.p|Trimin1|178431

>Trimin1|178431|e_gw1.170.6.1 ID=Trimin1|178431|e_gw1.170.6.1|Name=jgi.p|Trimin1|178431|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=91bp
VQVGCERFHAPELLFQPAIWDDDKAPKNARGLSDMICEAIMACNPEMRHD
MVSHIIVHGATAHIKGLAKRIEVRCREGACVHVLERVAVR*
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mRNA from alignment at Contig_170:60880..61152+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15239 ID=mRNA_15239|Name=jgi.p|Trimin1|178431|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_170:60880..61152+ (Tribonema minus UTEX_B_3156 )
GTGCAGGTCGGGTGCGAGCGCTTCCATGCGCCGGAGCTGCTCTTTCAGCC
CGCCATTTGGGACGACGACAAGGCGCCCAAGAACGCGCGTGGCCTCAGCG
ACATGATCTGCGAGGCCATCATGGCGTGCAATCCCGAGATGCGTCACGAC
ATGGTTTCCCACATCATCGTCCACGGGGCCACCGCGCACATCAAGGGGCT
CGCAAAACGGATAGAGGTACGATGCCGTGAGGGAGCTTGCGTGCATGTGT
TGGAGCGGGTCGCTGTGCGCTGA
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Coding sequence (CDS) from alignment at Contig_170:60880..61152+

>mRNA_15239 ID=mRNA_15239|Name=jgi.p|Trimin1|178431|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=273bp|location=Sequence derived from alignment at Contig_170:60880..61152+ (Tribonema minus UTEX_B_3156 )
GTGCAGGTCGGGTGCGAGCGCTTCCATGCGCCGGAGCTGCTCTTTCAGCC
CGCCATTTGGGACGACGACAAGGCGCCCAAGAACGCGCGTGGCCTCAGCG
ACATGATCTGCGAGGCCATCATGGCGTGCAATCCCGAGATGCGTCACGAC
ATGGTTTCCCACATCATCGTCCACGGGGCCACCGCGCACATCAAGGGGCT
CGCAAAACGGATAGAGGTACGATGCCGTGAGGGAGCTTGCGTGCATGTGT
TGGAGCGGGTCGCTGTGCGCTGA
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