mRNA_15238 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353554
Unique NamemRNA_15238
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|353554 vs. uniprot
Match: A0A835Z5Z0_9STRA (Calponin-homology (CH) domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z0_9STRA)

HSP 1 Score: 1561 bits (4041), Expect = 0.000e+0
Identity = 879/879 (100.00%), Postives = 879/879 (100.00%), Query Frame = 1
Query:    1 MDVELTDEDLQKLYAWVDEIPLSRPKRNIARDFSDGVLTAEVVAHYFPRLVELHNYSAANSVAQKLYNWGTLNTKVFRRLAFQLQQPDIEALAQCKPGAVEKLLYELQLRMANYRAKQRRASATSAQSGESENGQDTSQTGEDSSDRGGGGSAAGRSAPGPNLRGVVTILEQKVARLEQLVHMKDLKIARLEAALQAAEDALDGERRARERLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDQQLSADFDELQLQRGGGGAAPVRRMSGRAFTGYLSWRDALLLMIADYIGAFLGGILVYLTYLPHFSLVPPAPQRPHWPETTILPPENGGTRAALISYDAHGLTGSTARAPVELRRRRVESRGRMGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEMLDIAESVRRSRSSFNGLSSVEERGGSYAPSADIGRPAYAEPTAAPPPPPQIGNGQKSEIGSGQKGEAAGCGKLLRELKAIVEVHLHPGDILQVERSDGGMSTATDYDKLLGESDQLHRAYLASLLADQNSKLTCFCTRPAVAARKRNSRDAAPCEWGGKPCPHADDAFALTAALDAGSPCALESKRNYAFTLCEVVGTFMLIWTVLMLELRVELLPQSAKDNGYLITQAFLVGFVVVGLIMGMAGPTGYAANPARDWGPRLAHFVLPIPNKGSSEWMRAMAFKAFVGRDGKTAVHFLACRGDVKIYSPHTHHRSADLLHSGMANLDDHVSLTELFESTHXXXXXXXXXXXXXXXXXXXXEHCGVTWSWEFAMPPCSDAAGPGLVSPPRMLSVTAMHILKKRLSAWNPCSAFVVVAPVSGYYAPVPFFGGYVGGFLGALAFHLCRYLYNFPATFEGPENFGGNWNCAGKHCFPLPE 2637
            MDVELTDEDLQKLYAWVDEIPLSRPKRNIARDFSDGVLTAEVVAHYFPRLVELHNYSAANSVAQKLYNWGTLNTKVFRRLAFQLQQPDIEALAQCKPGAVEKLLYELQLRMANYRAKQRRASATSAQSGESENGQDTSQTGEDSSDRGGGGSAAGRSAPGPNLRGVVTILEQKVARLEQLVHMKDLKIARLEAALQAAEDALDGERRARERLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDQQLSADFDELQLQRGGGGAAPVRRMSGRAFTGYLSWRDALLLMIADYIGAFLGGILVYLTYLPHFSLVPPAPQRPHWPETTILPPENGGTRAALISYDAHGLTGSTARAPVELRRRRVESRGRMGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEMLDIAESVRRSRSSFNGLSSVEERGGSYAPSADIGRPAYAEPTAAPPPPPQIGNGQKSEIGSGQKGEAAGCGKLLRELKAIVEVHLHPGDILQVERSDGGMSTATDYDKLLGESDQLHRAYLASLLADQNSKLTCFCTRPAVAARKRNSRDAAPCEWGGKPCPHADDAFALTAALDAGSPCALESKRNYAFTLCEVVGTFMLIWTVLMLELRVELLPQSAKDNGYLITQAFLVGFVVVGLIMGMAGPTGYAANPARDWGPRLAHFVLPIPNKGSSEWMRAMAFKAFVGRDGKTAVHFLACRGDVKIYSPHTHHRSADLLHSGMANLDDHVSLTELFESTHXXXXXXXXXXXXXXXXXXXXEHCGVTWSWEFAMPPCSDAAGPGLVSPPRMLSVTAMHILKKRLSAWNPCSAFVVVAPVSGYYAPVPFFGGYVGGFLGALAFHLCRYLYNFPATFEGPENFGGNWNCAGKHCFPLPE
Sbjct:    1 MDVELTDEDLQKLYAWVDEIPLSRPKRNIARDFSDGVLTAEVVAHYFPRLVELHNYSAANSVAQKLYNWGTLNTKVFRRLAFQLQQPDIEALAQCKPGAVEKLLYELQLRMANYRAKQRRASATSAQSGESENGQDTSQTGEDSSDRGGGGSAAGRSAPGPNLRGVVTILEQKVARLEQLVHMKDLKIARLEAALQAAEDALDGERRARERLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDQQLSADFDELQLQRGGGGAAPVRRMSGRAFTGYLSWRDALLLMIADYIGAFLGGILVYLTYLPHFSLVPPAPQRPHWPETTILPPENGGTRAALISYDAHGLTGSTARAPVELRRRRVESRGRMGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEMLDIAESVRRSRSSFNGLSSVEERGGSYAPSADIGRPAYAEPTAAPPPPPQIGNGQKSEIGSGQKGEAAGCGKLLRELKAIVEVHLHPGDILQVERSDGGMSTATDYDKLLGESDQLHRAYLASLLADQNSKLTCFCTRPAVAARKRNSRDAAPCEWGGKPCPHADDAFALTAALDAGSPCALESKRNYAFTLCEVVGTFMLIWTVLMLELRVELLPQSAKDNGYLITQAFLVGFVVVGLIMGMAGPTGYAANPARDWGPRLAHFVLPIPNKGSSEWMRAMAFKAFVGRDGKTAVHFLACRGDVKIYSPHTHHRSADLLHSGMANLDDHVSLTELFESTHXXXXXXXXXXXXXXXXXXXXEHCGVTWSWEFAMPPCSDAAGPGLVSPPRMLSVTAMHILKKRLSAWNPCSAFVVVAPVSGYYAPVPFFGGYVGGFLGALAFHLCRYLYNFPATFEGPENFGGNWNCAGKHCFPLPE 879          
BLAST of jgi.p|Trimin1|353554 vs. uniprot
Match: A0A7S0JIM5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JIM5_9EUKA)

HSP 1 Score: 180 bits (457), Expect = 6.490e-48
Identity = 109/228 (47.81%), Postives = 135/228 (59.21%), Query Frame = 1
Query:   13 LTDEDLQKLYAWVDEIPLSRPKRNIARDFSDGVLTAEVVAHYFPRLVELHNYSAANSVAQKLYNWGTLNTKVFRRLAFQLQQPDIEALAQCKPGAVEKLLYELQLRMANYRAKQRRASATSAQSGES-------ENGQDTSQTGEDSSDRGGGGSAAGRSAPGPN-----------------------------LRGVVTILEQKVARLEQLVHMKDLKIARLEAALQ 588
            L D+DLQ++Y WVDEIPLSRPKRNIARDFSDGVL AE+VAHYFP+LVE+HNY AANS AQK+YNW TLN KVF+++ F L+Q +++AL  C+P AVEK L  LQ RMA Y A+Q   S  +  +G S       E+G    Q+   ++     G  A R A G                               LR  V ILE K+ +LEQLV +KD KI  L+  LQ
Sbjct:    6 LDDDDLQRIYTWVDEIPLSRPKRNIARDFSDGVLMAEIVAHYFPKLVEMHNYPAANSYAQKIYNWNTLNAKVFKKMGFALRQEEMDALCNCQPQAVEKTLKNLQQRMAKYGARQAEISRVAGGNGSSPSTDVAQESGVAAPQSVRSTAPHSAAGVQAAREARGVGGAQAKLGQLGLHDSALQELLAEKDHNIHELRETVDILEMKIQKLEQLVRLKDSKIVTLQTKLQ 233          
BLAST of jgi.p|Trimin1|353554 vs. uniprot
Match: A0A8J2WVQ1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WVQ1_9STRA)

HSP 1 Score: 177 bits (450), Expect = 2.060e-47
Identity = 105/198 (53.03%), Postives = 133/198 (67.17%), Query Frame = 1
Query:   13 LTDEDLQKLYAWVDEIPLSRPKRNIARDFSDGVLTAEVVAHYFPRLVELHNYSAANSVAQKLYNWGTLNTKVFRRLAFQLQQPDIEALAQCKPGAVEKLLYELQLRMANYRAKQRR---ASATSAQSGES-----ENGQDTSQTGEDSSDRGGGGSAAGRSAPGPNLRGVVTILEQKVARLEQLVHMKDLKIARLEAA 582
            + D++LQ+LYAWVDEIPLSRPKRNIARDF+DGVL AEV  HYFPRLV+LHNY  ANS+ QKLYNW TLN +V R+L   L + D+EA+ QC PGAVE++L  LQL+MA YRA Q+R   A AT+  + E+        + + Q   D            +     +LR  V ILEQK+A+LEQLV +KD KI +L+ A
Sbjct:    5 MDDDELQRLYAWVDEIPLSRPKRNIARDFADGVLAAEVCHHYFPRLVDLHNYPPANSMRQKLYNWDTLNARVLRKLDAALPRADVEAVCQCAPGAVERVLNTLQLKMARYRANQQRRKEAKATTQANNEAVAPPPAKAKASLQADVDQE------LLVEKEQEIHDLRETVDILEQKIAKLEQLVRLKDAKIQKLKDA 196          
BLAST of jgi.p|Trimin1|353554 vs. uniprot
Match: A0A7S1CID1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CID1_9STRA)

HSP 1 Score: 175 bits (443), Expect = 5.630e-47
Identity = 81/117 (69.23%), Postives = 97/117 (82.91%), Query Frame = 1
Query:    1 MDVELTDEDLQKLYAWVDEIPLSRPKRNIARDFSDGVLTAEVVAHYFPRLVELHNYSAANSVAQKLYNWGTLNTKVFRRLAFQLQQPDIEALAQCKPGAVEKLLYELQLRMANYRAK 351
            M   L D+ LQK+Y+WVDEIPLSRPKRNI RDFSDGV+ AEVVAHYFPRLVE+HNYS ANSV QKLYNW TLN KVF++L F + +PD++A+  CKPG VE +LY+LQ +MA YRA+
Sbjct:   46 MAAPLDDDQLQKIYSWVDEIPLSRPKRNITRDFSDGVMMAEVVAHYFPRLVEMHNYSPANSVRQKLYNWATLNQKVFKKLGFAVAKPDVDAVVNCKPGVVESVLYQLQSKMAAYRAR 162          
BLAST of jgi.p|Trimin1|353554 vs. uniprot
Match: A0A7S4FAW6_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FAW6_CHRCT)

HSP 1 Score: 177 bits (449), Expect = 2.430e-46
Identity = 108/240 (45.00%), Postives = 137/240 (57.08%), Query Frame = 1
Query:   13 LTDEDLQKLYAWVDEIPLSRPKRNIARDFSDGVLTAEVVAHYFPRLVELHNYSAANSVAQKLYNWGTLNTKVFRRLAFQLQQPDIEALAQCKPGAVEKLLYELQLRMANYRAKQRRASATSAQSGESENGQDTSQTGEDSSDRGGGGSAAGRSAPGPN---------------------------------------------LRGVVTILEQKVARLEQLVHMKDLKIARLEAALQAAE 597
            + DE+LQ++Y WVDE+PLSRPKRNIARDF+DGVLTAE+VAHYFP+LVE+HNY AANS AQK+YNW TLN KVF+++ FQL+Q +++AL  C+P AVEK+L  LQ RMA Y A++           E ++G    Q+    S           +APGPN                                             LR  V ILE K+ +LEQLV +KD KIA L+A LQ  E
Sbjct:   50 MDDEELQRIYTWVDEVPLSRPKRNIARDFADGVLTAEMVAHYFPKLVEMHNYPAANSYAQKIYNWNTLNAKVFKKMGFQLKQEEMDALCNCQPQAVEKMLKNLQQRMAKYGARK----------AEQDSGDAPPQSAAPPS------RVPRAAAPGPNGGIGSVSPPGAARGVAAAEARMANMGLHDGSVQELLAEKDHNIQELRETVDILEVKIQKLEQLVRLKDSKIATLQAKLQQFE 273          
BLAST of jgi.p|Trimin1|353554 vs. uniprot
Match: A0A1Y1I7X9_KLENI (Calponin-homology (CH) domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I7X9_KLENI)

HSP 1 Score: 174 bits (441), Expect = 7.240e-46
Identity = 104/217 (47.93%), Postives = 137/217 (63.13%), Query Frame = 1
Query:   10 ELTDEDLQKLYAWVDEIPLSRPKRNIARDFSDGVLTAEVVAHYFPRLVELHNYSAANSVAQKLYNWGTLNTKVFRRLAFQLQQPDIEALAQCKPGAVEKLLYELQLRMANYRAKQRRASAT---------SAQSGESENGQDTSQTGEDSSDRGGGGSA-------------AGRSAPGPNLRGVVTILEQKVARLEQLVHMKDLKIARLEAALQAA 594
            EL++ +LQ LY WVDEIPLSRPKRNIARDFSDGVL AE+VAHYFP+ VE HNYS AN  AQK+YNW TLN KVF++L F + + +IEA++ C PGA+EKLL +L++++A Y+  +R +S+          ++QSG    G   S   +  S  G  G+A             A + A    LR    +L+ KV +LEQLV +K+ KI  L A LQ A
Sbjct:    6 ELSEAELQNLYTWVDEIPLSRPKRNIARDFSDGVLAAEIVAHYFPKTVETHNYSQANGFAQKMYNWNTLNLKVFKKLQFSVTREEIEAISNCVPGAIEKLLKQLKVKIAKYKPGRRPSSSEGPAPGTEGMASQSGHQRRGDSLSPNSKALSYGGANGTATDPTRRFQDLEAVAEKDAKILELRETNELLDSKVKKLEQLVRLKESKIQALTAKLQQA 222          
BLAST of jgi.p|Trimin1|353554 vs. uniprot
Match: R1C9R5_EMIHU (Calponin-homology (CH) domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C9R5_EMIHU)

HSP 1 Score: 171 bits (432), Expect = 7.000e-45
Identity = 97/212 (45.75%), Postives = 138/212 (65.09%), Query Frame = 1
Query:   13 LTDEDLQKLYAWVDEIPLSRPKRNIARDFSDGVLTAEVVAHYFPRLVELHNYSAANSVAQKLYNWGTLNTKVFRRLAFQLQQPDIEALAQCKPGAVEKLLYELQLRMANYRAKQRRASATSAQSGESENGQDTSQTGEDSSDRGGGGSAAGRSAPG-----------------PNLRGVVTILEQKVARLEQLVHMKDLKIARLEAALQAAE 597
            + D++LQ++Y WVDE+PLSRPKRNIARDF+DGVLTAE+V HYFPR+VE+HNY +ANS AQK+YNW TLN +VF+++ +QL+Q +++A+  C+P AVE++L +LQ+R++ Y ++ +   A   +     + Q T ++      R GG   AG +  G                   LR  V ILE K+ +LEQLV +KD KIA L+  LQ  E
Sbjct:    1 MDDDELQRIYTWVDEVPLSRPKRNIARDFADGVLTAEIVHHYFPRIVEVHNYPSANSYAQKMYNWQTLNARVFKKMGWQLRQEELDAICSCQPQAVERMLKQLQVRLSKYGSRSKEEEAAPQRP----HAQATPRSAAAPPRRVGG--LAGGAQVGLRDGAVQELLAEKDQNISELRETVEILEIKIQKLEQLVRLKDSKIATLQGKLQKYE 206          
BLAST of jgi.p|Trimin1|353554 vs. uniprot
Match: A0A024U2C0_9STRA (Calponin-homology (CH) domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U2C0_9STRA)

HSP 1 Score: 170 bits (431), Expect = 3.350e-44
Identity = 79/122 (64.75%), Postives = 104/122 (85.25%), Query Frame = 1
Query:    7 VELTDEDLQKLYAWVDEIPLSRPKRNIARDFSDGVLTAEVVAHYFPRLVELHNYSAANSVAQKLYNWGTLNTKVFRRLAFQLQQPDIEALAQCKPGAVEKLLYELQLRMANYRAKQRRASAT 372
            + L DE LQK+YAW+DE+PLSRPK+N+ RDFSDG+L AEV+A+YFP+LV++HNYS+ANS+ QK YNWGTLNTKV +RL FQL + +I+ + QCKPGAVE+ L +LQ+++ANYR   RRAS+T
Sbjct:    4 IVLDDEILQKIYAWIDEVPLSRPKKNMGRDFSDGILAAEVIAYYFPKLVQMHNYSSANSLTQKQYNWGTLNTKVLKRLGFQLTKKEIDDIVQCKPGAVEEFLSKLQVKIANYRL--RRASST 123          
BLAST of jgi.p|Trimin1|353554 vs. uniprot
Match: A0A397AXI6_9STRA (Calponin-homology (CH) domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AXI6_9STRA)

HSP 1 Score: 168 bits (425), Expect = 5.350e-44
Identity = 80/122 (65.57%), Postives = 101/122 (82.79%), Query Frame = 1
Query:    7 VELTDEDLQKLYAWVDEIPLSRPKRNIARDFSDGVLTAEVVAHYFPRLVELHNYSAANSVAQKLYNWGTLNTKVFRRLAFQLQQPDIEALAQCKPGAVEKLLYELQLRMANYRAKQRRASAT 372
            + L DE LQK+YAW+DE+PLSRPK+N+ RDFSDG+L AEVVA YFP+LV++HNYS+ANSV QK YNWGTLN KV +RL FQL + DI+ + QCKPGAVE+ L +LQ+++ANYR   RR S+T
Sbjct:    4 IMLDDEILQKIYAWIDEVPLSRPKKNMGRDFSDGILAAEVVAFYFPKLVQMHNYSSANSVTQKQYNWGTLNRKVLKRLGFQLTKRDIDDIVQCKPGAVEEFLSKLQVKIANYRL--RRTSST 123          
BLAST of jgi.p|Trimin1|353554 vs. uniprot
Match: A0A7S3VM96_DUNTE (Hypothetical protein n=2 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VM96_DUNTE)

HSP 1 Score: 167 bits (424), Expect = 1.860e-43
Identity = 106/229 (46.29%), Postives = 140/229 (61.14%), Query Frame = 1
Query:    7 VELTDEDLQKLYAWVDEIPLSRPKRNIARDFSDGVLTAEVVAHYFPRLVELHNYSAANSVAQKLYNWGTLNTKVFRRLAFQLQQPDIEALAQCKPGAVEKLLYELQLRMANYRAKQRRASATS---------------------AQSGESENGQD---TSQTGEDSSDR---------GGGGSAAGRSAPGPNLRGVVTILEQKVARLEQLVHMKDLKIARLEAALQAA 594
            +++++ +LQ LY WVDEIPLSRPKRNIARDFSDGVL AEVVAHYFPRLV+LHNYSAAN+ AQK+YNW T+N KVF+RL F + + D EA+A C+PGA+E+LL   ++++A ++ +    + T+                     A SG ++NG D    +Q     S           G   +AA +      LR    ILE KV ++EQLV +KD KIA L   LQAA
Sbjct:    2 MDVSEAELQGLYTWVDEIPLSRPKRNIARDFSDGVLFAEVVAHYFPRLVDLHNYSAANNTAQKMYNWNTMNQKVFKRLGFSVAKQDFEAIANCQPGAIERLLKLAKIKIAKFKEEGGAGAFTAPAVPRVANLAHHHSEQHMGGQAPSGYTQNGGDPMGAAQRAHAHSQXXXHANVLMTGRSEAAAEKDHTLNELRETNEILETKVRKMEQLVRLKDSKIATLMGKLQAA 230          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353554 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5Z0_9STRA0.000e+0100.00Calponin-homology (CH) domain-containing protein n... [more]
A0A7S0JIM5_9EUKA6.490e-4847.81Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A8J2WVQ1_9STRA2.060e-4753.03Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1CID1_9STRA5.630e-4769.23Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S4FAW6_CHRCT2.430e-4645.00Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A1Y1I7X9_KLENI7.240e-4647.93Calponin-homology (CH) domain-containing protein n... [more]
R1C9R5_EMIHU7.000e-4545.75Calponin-homology (CH) domain-containing protein n... [more]
A0A024U2C0_9STRA3.350e-4464.75Calponin-homology (CH) domain-containing protein n... [more]
A0A397AXI6_9STRA5.350e-4465.57Calponin-homology (CH) domain-containing protein n... [more]
A0A7S3VM96_DUNTE1.860e-4346.29Hypothetical protein n=2 Tax=Dunaliella tertiolect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_170contigContig_170:27036..40490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353554|estExt_Genemark1.C_Ctg_1700005
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0007026,GO:0007498,GO:0008017,GO:0008092,GO:0008150,GO:0009888,GO:0009987,GO:0010639,GO:0015631,GO:0016477,GO:0031110,GO:0031111,GO:0031114,GO:0031514,GO:0032502,GO:0032838,GO:0032886,GO:0033043,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043242,GO:0043244,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051179,GO:0051493,GO:0051494,GO:0051674,GO:0065007,GO:0070507,GO:0097014,GO:0099568,GO:0120025,GO:0120038,GO:1901879,GO:1901880,GO:1902903,GO:1902904
Preferred nameSPEF1
DescriptionCH-like domain in sperm protein
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2CSC3@1|root,2S497@2759|Eukaryota
Evalue9.86e-46
Seed ortholog2903.EOD15384
Hectar predicted targeting categoryother localisation
TranscriptId353876
TrackFilteredModels1
ProteinId353554
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353554gene_15238Tribonema minus UTEX_B_3156 geneContig_170 27036..40490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353554Trimin1|353554|estExt_Genemark1.C_Ctg_1700005Tribonema minus UTEX_B_3156 polypeptideContig_170 27170..40490 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15238_18exon_15238_18Tribonema minus UTEX_B_3156 exonContig_170 27036..27341 -
exon_15238_17exon_15238_17Tribonema minus UTEX_B_3156 exonContig_170 28180..28309 -
exon_15238_16exon_15238_16Tribonema minus UTEX_B_3156 exonContig_170 28414..28687 -
exon_15238_15exon_15238_15Tribonema minus UTEX_B_3156 exonContig_170 28976..29000 -
exon_15238_14exon_15238_14Tribonema minus UTEX_B_3156 exonContig_170 29615..29802 -
exon_15238_13exon_15238_13Tribonema minus UTEX_B_3156 exonContig_170 30422..30487 -
exon_15238_12exon_15238_12Tribonema minus UTEX_B_3156 exonContig_170 30581..30731 -
exon_15238_11exon_15238_11Tribonema minus UTEX_B_3156 exonContig_170 31182..31307 -
exon_15238_10exon_15238_10Tribonema minus UTEX_B_3156 exonContig_170 31790..31887 -
exon_15238_9exon_15238_9Tribonema minus UTEX_B_3156 exonContig_170 33070..33093 -
exon_15238_8exon_15238_8Tribonema minus UTEX_B_3156 exonContig_170 33184..33378 -
exon_15238_7exon_15238_7Tribonema minus UTEX_B_3156 exonContig_170 34442..34537 -
exon_15238_6exon_15238_6Tribonema minus UTEX_B_3156 exonContig_170 34719..34930 -
exon_15238_5exon_15238_5Tribonema minus UTEX_B_3156 exonContig_170 35241..35301 -
exon_15238_4exon_15238_4Tribonema minus UTEX_B_3156 exonContig_170 37760..38176 -
exon_15238_3exon_15238_3Tribonema minus UTEX_B_3156 exonContig_170 38827..38939 -
exon_15238_2exon_15238_2Tribonema minus UTEX_B_3156 exonContig_170 39716..39884 -
exon_15238_1exon_15238_1Tribonema minus UTEX_B_3156 exonContig_170 40368..40490 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15238UTR3_15238Tribonema minus UTEX_B_3156 three_prime_UTRContig_170 27036..27169 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15238CDS_15238Tribonema minus UTEX_B_3156 CDSContig_170 40368..40490 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15238 ID=mRNA_15238|Name=jgi.p|Trimin1|353554|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2774bp|location=Sequence derived from alignment at Contig_170:27036..40490- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTAGAGCTGACCGACGAGGATCTGCAGAAGCTATATGCGTGGGT
GGACGAAATACCACTAAGCAGGCCCAAGAGGAACATCGCTAGAGACTTCA
GCGATGGTGTATTGACAGCGGAGGTGGTGGCGCACTACTTCCCGCGCCTC
GTGGAGCTGCACAACTACTCCGCCGCCAACAGCGTCGCGCAGAAGCTCTA
CAACTGGGGCACGCTCAACACGAAGGTGTTCCGGCGGCTGGCGTTCCAGC
TGCAGCAGCCGGACATAGAGGCGCTCGCGCAGTGTAAGCCAGGCGCGGTG
GAGAAGCTCCTGTACGAGCTGCAGCTGCGCATGGCCAACTACCGCGCGAA
GCAGCGCAGGGCGTCGGCGACGTCCGCGCAGAGCGGCGAGAGCGAGAACG
GCCAGGACACGTCGCAGACCGGCGAGGACAGCTCGGACAGGGGCGGCGGC
GGCAGCGCGGCAGGACGGTCCGCCCCAGGCCCAAATTTGCGCGGCGTGGT
GACGATTTTGGAGCAGAAGGTGGCGCGGCTCGAGCAGCTCGTACACATGA
AGGACCTCAAGATCGCGCGCCTCGAGGCAGCGCTGCAGGCGGCGGAGGAC
GCGCTGGACGGGGAGCGGCGCGCGCGCGAGCGGCTGCAGCAGCAGCAGCA
GCAGCAGGCGCCGCAGCAGCAGCACGGCCATGCGTACCAGGCGCAGTACC
AGCAGCAGCGGCAGCAGCAGCGGCAGGAGTACGATGACCAGCAGCTGAGC
GCTGACTTTGATGAGCTGCAGCTGCAGCGAGGCGGCGGCGGCGCGGCGCC
GGTGCGGCGGATGTCGGGCAGGGCCTTCACAGGCTACCTCTCCTGGCGCG
ATGCTCTCCTGCTGATGATCGCCGACTACATCGGCGCGTTCCTCGGCGGC
ATCCTGGTCTACCTCACGTACCTGCCGCACTTCAGCCTCGTGCCGCCGGC
GCCGCAGCGCCCGCACTGGCCGGAGACCACGATACTGCCGCCGGAGAACG
GCGGCACGCGCGCGGCGCTCATATCGTACGACGCGCACGGCCTCACCGGC
AGCACCGCGCGCGCGCCCGTGGAGCTGCGGCGGCGGCGCGTCGAGTCGAG
GGGGCGCATGGGGGGCATATCGTACGACGTGCGCGGCCTCACGGGCAGCA
ACGCGCGCGCGCCCGTGGAGCTGCGGCGGCGGCGCGTCGAGCGCAAGGGC
AGCGTAGAGATGCTGGACATCGCCGAGTCCGTGCGCCGCAGCCGCAGCTC
CTTCAACGGTCTGAGCTCCGTCGAGGAGCGCGGCGGCAGCTACGCGCCGT
CGGCTGACATCGGGCGGCCGGCCTACGCGGAACCCACGGCAGCGCCGCCG
CCACCGCCGCAGATAGGCAACGGCCAGAAGAGCGAGATAGGCAGCGGCCA
GAAGGGCGAGGCGGCGGGGTGCGGCAAGCTGCTGCGCGAGCTCAAGGCGA
TCGTTGAAGTTCACCTGCACCCCGGCGACATACTTCAAGTGGAGCGCAGC
GACGGCGGCATGAGCACTGCCACCGACTACGACAAGCTGCTGGGGGAGAG
CGACCAGCTGCACCGCGCGTACCTCGCGTCCCTGCTGGCCGACCAGAACT
CCAAGCTGACGTGCTTCTGCACGCGCCCGGCGGTCGCTGCACGCAAAAGA
AACTCGCGCGATGCAGCGCCGTGTGAATGGGGTGGGAAGCCGTGCCCTCA
TGCGGACGATGCGTTCGCGCTCACAGCAGCGCTCGACGCCGGCTCGCCGT
GCGCGCTTGAATCAAAACGCAACTACGCCTTCACGCTCTGCGAAGTCGTC
GGCACCTTCATGCTCATCTGGACCGTCCTGATGCTGGAGCTGCGAGTAGA
GCTCCTGCCGCAAAGCGCCAAGGACAACGGCTACCTCATCACGCAGGCCT
TCCTCGTTGGCTTCGTCGTCGTCGGCCTCATCATGGGCATGGCAGGGCCC
ACGGGCTACGCCGCCAACCCCGCGCGCGACTGGGGGCCGCGCTTAGCGCA
CTTCGTGCTGCCCATCCCCAACAAGGGCTCCTCAGAGTGGATGCGCGCGA
TGGCCTTCAAGGCGTTTGTCGGCAGAGACGGCAAGACCGCGGTACACTTC
CTGGCCTGCCGCGGCGACGTCAAGATCTACAGTCCGCACACTCACCACAG
GAGCGCCGATTTACTGCACAGCGGCATGGCGAACCTCGACGACCACGTAT
CCCTCACGGAGCTCTTCGAGTCGACCCACGAATCGACCCACAAGTCAACC
CACGAGTCGACCCACGAGTCGACCCACAAGTCGACGCACGAGCACTGTGG
GGTTACGTGGTCGTGGGAGTTCGCCATGCCGCCTTGCAGCGACGCCGCTG
GCCCCGGTCTGGTCTCGCCCCCGCGCATGCTGAGCGTCACGGCCATGCAC
ATCTTGAAGAAGCGCTTGTCCGCATGGAATCCGTGCAGCGCGTTCGTGGT
GGTGGCGCCGGTTTCGGGGTACTACGCGCCAGTGCCGTTCTTTGGCGGTT
ACGTGGGCGGTTTCCTGGGCGCGCTCGCGTTCCACCTGTGCCGCTACCTC
TACAACTTCCCCGCCACGTTCGAGGGGCCCGAGAACTTTGGCGGCAACTG
GAACTGCGCCGGCAAGCACTGCTTCCCGCTGCCAGAGTAGCGCCGGCGCT
GATGCCGATGGCGCTGCACTACAGTACTAGCGCTCTGCTAGCGCCGAGCC
CTCTTTACAGGCATCTGTGGCATGGGCTCAGCAACTGTCAAGGGGCCCGT
TGGCCCCTCCCACGAACCCCCGCG
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protein sequence of jgi.p|Trimin1|353554

>Trimin1|353554|estExt_Genemark1.C_Ctg_1700005 ID=Trimin1|353554|estExt_Genemark1.C_Ctg_1700005|Name=jgi.p|Trimin1|353554|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=880bp
MDVELTDEDLQKLYAWVDEIPLSRPKRNIARDFSDGVLTAEVVAHYFPRL
VELHNYSAANSVAQKLYNWGTLNTKVFRRLAFQLQQPDIEALAQCKPGAV
EKLLYELQLRMANYRAKQRRASATSAQSGESENGQDTSQTGEDSSDRGGG
GSAAGRSAPGPNLRGVVTILEQKVARLEQLVHMKDLKIARLEAALQAAED
ALDGERRARERLQQQQQQQAPQQQHGHAYQAQYQQQRQQQRQEYDDQQLS
ADFDELQLQRGGGGAAPVRRMSGRAFTGYLSWRDALLLMIADYIGAFLGG
ILVYLTYLPHFSLVPPAPQRPHWPETTILPPENGGTRAALISYDAHGLTG
STARAPVELRRRRVESRGRMGGISYDVRGLTGSNARAPVELRRRRVERKG
SVEMLDIAESVRRSRSSFNGLSSVEERGGSYAPSADIGRPAYAEPTAAPP
PPPQIGNGQKSEIGSGQKGEAAGCGKLLRELKAIVEVHLHPGDILQVERS
DGGMSTATDYDKLLGESDQLHRAYLASLLADQNSKLTCFCTRPAVAARKR
NSRDAAPCEWGGKPCPHADDAFALTAALDAGSPCALESKRNYAFTLCEVV
GTFMLIWTVLMLELRVELLPQSAKDNGYLITQAFLVGFVVVGLIMGMAGP
TGYAANPARDWGPRLAHFVLPIPNKGSSEWMRAMAFKAFVGRDGKTAVHF
LACRGDVKIYSPHTHHRSADLLHSGMANLDDHVSLTELFESTHESTHKST
HESTHESTHKSTHEHCGVTWSWEFAMPPCSDAAGPGLVSPPRMLSVTAMH
ILKKRLSAWNPCSAFVVVAPVSGYYAPVPFFGGYVGGFLGALAFHLCRYL
YNFPATFEGPENFGGNWNCAGKHCFPLPE*
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mRNA from alignment at Contig_170:27036..40490-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15238 ID=mRNA_15238|Name=jgi.p|Trimin1|353554|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=13455bp|location=Sequence derived from alignment at Contig_170:27036..40490- (Tribonema minus UTEX_B_3156 )
ATGGACGTAGAGCTGACCGACGAGGATCTGCAGAAGCTATATGCGTGGGT GGACGAAATACCACTAAGCAGGCCCAAGAGGAACATCGCTAGAGACTTCA GCGATGGTGTATTGACAGCGGAGGTGAGGAAGCTCGGTGCGCCACAGTGT GCGACGTTCATGATGCATGTGACTTTCGTTATACTCGACATGGTCATCGG CAGCTGCTTCAGAATTCATTAGCAGCCATGCAGCTTCGTACAAGGCAGAT TGGCAATGCGGATGCACACACTAACTTCGTCAGGATCACGCACGCTGCAC ATTGTCATCCTTGAGGTATGGGAAGGATGCTGCTCAAACCTGCACACTTA ACTGATGCTGCGTGTTCATCGGAGCACCTTCTCAGCAGCGCTATGTAGTA CCAGGTGGGGCTGCCGTCATCATCGCGCCACGCTGGTCCCTCGTGGCCAC CTTTTTTCGCAGCGCGACGCTGCGCGCGCCCTGCTCCTATTGCCATATTG CCATATGTTGCCCGCATCATAACTGCCGCCGATGCAAAGCTGGCGAGGAG TGCAACGTCAGGAGCGCTGCTCAACTGACGATGCCTCGGCGCGATCGCCT GTGCAGGTGGTGGCGCACTACTTCCCGCGCCTCGTGGAGCTGCACAACTA CTCCGCCGCCAACAGCGTCGCGCAGAAGCTCTACAACTGGGGCACGCTCA ACACGAAGGTGTTCCGGCGGCTGGCGTTCCAGCTGCAGCAGCCGGACATA GAGGCGCTCGCGCAGTGTAAGCCAGGTGCGCAGCGGGGCGTTGGGGCGTC TGAACAGTGGCTCGCACGGCGCTACCATCATCTTGTGAGAGGTCACCAAA TGACTGCGTTATTGCCTACAGAATGTGCAGTGTACAGAGCCGTGATGGTC AGTTGAGCGCTGTCACCCCGCCTCTGACGAACTGATGGTCGCTGCTGCTC CTGCTGCTGCGAGGACACACTACCTGCAACAAACAACAGCGGTGCACTGG CATCGAGGACTGACCAGTTTTGGCCATGCCAAGTGATCGTCATTTATCAT GATGGTTTATGGTGATCAATATTGGGGCAGCGTGCGAGCTCATCGTATCG TTGCCGTGTTTTGGCGCACAGTCACGTGCCGCTTCGTTCCGGGTGCGGAA GCAGCACCCACTGCAGGCGCCGAGGCATAAAGTTGCAACATTAGCGCTCC GCGTAGACAACGCAGTACGTACCGGCGCCAAGGCTTACCATTGCGGCAGC ACGAATGGCTGTGGCGACATGGCGGACTGCGCAAGCCGGGACTGCTCGCC TAACGCGCTCACCACCGGGTACGTCCTCACGCACACTGAGAGCGCCGCGT ATGGGGCTATGTAGTGCCGTGGCTCAGACACGCAAGCGCGCAATGGAAAA CTGCGCCTCGCCGCAAGCAGCAGCAGCCGCGGCGCATCGCCTCAACTAAC ACAGGACCGTGCCCCCGGTCCGTGACATTGACGTTGATCGACAAATGTAA CCGTCATGGTGGTCATCTGATTTTCTCTGCGGTGGCCGTTCGACGGCGCA GGCGCGGTGGAGAAGCTCCTGTACGAGCTGCAGCTGCGCATGGCCAACTA CCGCGCGAAGCAGCGCAGGGCGTCGGCGACGTCCGCGCAGAGCGGCGAGA GCGAGAACGGCCAGGTGAGTGGCACTGCGCGCTGTCGCTGCGGCATCTGC TAGTAGGCTTGGCGCTTGCCGCCGTGTTGCTGGCAGAGCTACTGCTGAGT CTGCGTGAGGATAACGGGATACTTTGAGCTGCGGTATCTGCTGGTAGGCT CGGTGGCTGCCGCCGCGTCGCTGGCAGCGTCGCCGCTGAGTTCGTGTGAG GGCACCGGGACACTTTGGAATTTGTGCCTCATGCGGCCGTTGCTGCAGAT CGGCTGTGGCGCTGTTGAGCACGGTCTCCACTGCAACGCATCAACAAGTG CGCTTGGCCCCTCTTTCTTGTTCTGTATGTCGCGAATGCCAGGCGATCGA TTGTGCAATGCAATTATGCAGATTTACACGCATGCTGCCATACACGACAC CACTTCTGGAGGTGTGCAGACGCGCTGTGCAGCTCTGCGCAGCGGCGCCC CCTACTTCTTCAATCAGGCCGCAATGCTTGATCCTGCCCGTGACCGCCGC ATGCAGCGACGTGCATACCCTTCTTTGTGCGCTGCGACCTAAACTATCCT GTAGCGCTGCGGCGCATGGCATGGCACATGAACTGGCCGCTGAATTTCAC CTACACAATGAGCTTCACCGCGAAATGCTGATGTCGCATCGCCCCCTGCC CCCCCTCCTTTCAGGACACGTCGCAGACCGGCGAGGACAGCTCGGACAGG GGCGGCGGCGGCAGCGCGGCAGGACGGTCCGCCCCAGGCCCAAATTTGCG CGGCGTGGTGACGATTTTGGAGCAGAAGGTGGCGCGGCTCGAGCAGCTCG TACACATGAAGGACCTCAAGATCGCGCGCCTCGAGGCAGCGCTGCAGGCG GCGGAGGACGCGCTGGACGGGGAGCGGCGCGCGCGCGAGCGGCTGCAGCA GCAGCAGCAGCAGCAGGCGCCGCAGCAGCAGCACGGCCATGCGTACCAGG CGCAGTACCAGCAGCAGCGGCAGCAGCAGCGGCAGGAGTACGATGACCAG CAGCTGAGCGCTGACTTTGATGAGCTGCAGCTGCAGCGAGGCGGCGGCGG CGCGGCGCCGGTGCGGCGGATGTCGGGCAGGGTGGGCCGCACGTCATGAC CTCGTGCACCGCGCTGCTGCCGCGCGCGCGCGGCAGGACAGCATGTACGT AATAGTGGCACAAAGAGCGCCTGCAGCGGGCGGCGGCAGCTGACGCACGT GTCAGCGGGCAGCGCTTGCACGCATCGTCCACAATGCTCAGTAGGGATGG TCCGCACGGTGATGGCGAGACTGCTGTTCGGCAGGCGTCTGACGCGCTGA CCGCGTGCGCTGCCGTTCGGCGTGGCGGCGCCTCTGTTGTCTGCGAAGGC TGCCCACGCGGTGCCGCTGCTGGTGCTGGTGGGGAGACTCAGAAGCTGAG TCTCTGCTGCAGAGGCGGAGGTACTCACGCCGACAATGATTGCGTCTTGG GGCGCATTCCATTTGATTAGACGCTGGCGCGCGCCAGGAAACACACTCGC AATATAGACATTGCAATTAGAGCATTGATTCATGAGTGTTTTTCATAGTG ATTGGCAAATTTGTCGTGCTTGATCTGCAGTGTCCCCACAACCAGCTGGC AATGAGGAATGTGTCCACTCGGGACTCCACTGCAATCTGGTGTGCTGCCA AGCAACCAGATTGTTCTGTGATATTTGCAGGGCTCGGCAATGCCAGCTCT CTTCAATGCACGCTCTCTCGATTGCGGCAGGGTGCACACGCATGTGATCA GTCATCATTCAGCGCACGTCATCATTCATCGGAGCATTACAATTCATTTG CCATTTGCATTCATCTAGCCACAGGGACAATGGAATGGCGCATTGCAACG GAAATGGAGGACATGCAATCTCTGCTCCAGCATCTTGCAGCAAGTATGTA TCCACCTTCTGCTTTGAAATACAGCAGTCATTTGATGAAATGTCACCATT GAAACTTCAAACGTGAGCTGGAGATCTTGAAGTAACACTTGAACTTTGTG ATGAGCAGAGAAACACAGAGACAGGCCGGGCGCAGTGAGTGCGCGTCAAG CAGGCGCCATGGCTACGATCGCAACCACGTTGACGTACACTTTTACTCAG CGATGGATCAGCGAGATGCTGGCTATGCTGGTTGTGATCACCATTGGAGA TTGCGTGATCGCGAATGAGGTCTTGGCCCGCACCAAAGGTGGGTGACAGA ACCACACATGCAGCTCACGATGTCAAACATTGACATTACATCTACAGGCA AAGCTGGTCCAGCGGTTTATTACTTTGTGTCAATCGTGTCACTAGCCAAT TGCCGAAGCAAAAGCAGCGATTTTGATATCGGCCCAGATTCGCTGATCTT GTTGTCCGCTCTGCCACAGGCCATGCTTTGGGACTGGGGCATGTTTCGGT GGGATTTGGCATGGCATTCTTCACTGCGATTGTCATGTTTGGCGGCATCA GCGCAGCTTGCAATCCGGCCATGCTTCTCGCTAAGGTGAGGCACGGAAAT AGCAAGCAGCGTGCCTGGCACACAAGCCTGGCTGTCAAATCCAGCAGCAT CAACAGCAGCAGTAGCTACCGCATCATCACCACTAGCAGCAGCAGCAGCA GCAGCAGCAGCAGTTGCTGAACGACCACCACCATCAGCACCATCAGCAGC AGCAATGGAGTTATTGCTCAAGTGCTATGTACCAGCATTTGTGATTGTCC CATGTTCTCCAGAACTCGACACAACAGTACTCCCAAGAATGTTTCAGCGA CACTACCACCCTCATGTCACAAACGCGCGCGCACGTCGTATTGTCGGATG ACAACGCTGCGCCTTCGGAGCATGCGCCTGCGCATCGACCGGCAGCATTC AATTCCCGGCACATTGGCACACTCTGGGTTCATTGAGCAGTGTCGATGGC GCCATCCAACGCCAAGCCGTGTTGCAGGAACGCATTGATTGTGTGCAGTA TGCACACTGGCTCTCCTGTCGAGTCACACACAGCATGGTTGCATCTTACC ACGCCTGGTGGCTCCACTATGGCAGCGCTGCTACCGTACATGCGCATGTG GGGTTGATGATAGAAGCAGATGAGCAGGGTTTTCATGCTTTGAGATAGAT GCTTTTCTCAGCATGCTTGCAACTGGTGCCATAAAGTTCTTTGTGAGTTC TGGCATCGTTGAAAGTGCGCCCTCCCCGCCACCCCTTGATCCACCTGCAT TTTCAGGCGTTCTAACCGAATGTGGATTGCTGTGCCTGAGGCTCACCACC AATAGTGGCTTGCAGTTCCATGAGTTGTCTGTTGCCTTCACTATCATGGC TACAACACTTCTATCAGCTGCAGTCCTTGCTCAATGTACGCCATCAATTC CATGAACTATTTTCATTGGCGCGATGCCCCTTCTCCTGCTCATCGCCGGC CCATTCGCCTATGGTGATCACGACACCCCATCTTGTGTTCGCCCTGTCTG TCAGTATCTCCCTTCTCATCAGCTGATATCACTCACTGCATCAGCCCCCC CCCCCCCCCGCCCCCCGCCCCTGCCGCCCCCCTTGGCAGGCCTTCACAGG CTACCTCTCCTGGCGCGATGCTCTCCTGCTGATGATCGCCGACTACATCG GTGGGTGTTCACGCTGCGCCGCTATGACATTGTGCCCTCTTGCGAGAGCA GCGCACTGTGTCGTCTGCAGGTGCTGCCTTGCAGCAGAATACCACGCCGC CCACAGAACGTGCTGCTGCGTGTTCCCGGCCGTCCGCGCGCGCGTCAGCA GTCGCCATGTCGTGCTTGAAGTCCTTCCGCTTGTGCGGCGGACTCCCCAT GAAGCACACACAAGACACACAGCTCTTCCTTTTGTGCAATGTGTGATGCC GTTGTGACACCCACCTTCCCCCCCTCCCCCCCCCCCCCCCCCCTGGCGCA CGTTCCTCAGGCGCGTTCCTCGGCGGCATCCTGGTCTACCTCACGTACCT GCCGCACTTCAGCCTCGTGCCGCCGGCGCCGCAGCGCCCGCACTGGCCGG AGACCACGATACTGCCGCCGGAGAACGGCGGCACGCGCGCGGCGCTCATA TCGTACGACGCGCACGGCCTCACCGGCAGCACCGCGCGCGCGCCCGTGGA GCTGCGGCGGCGGCGCGTCGAGGTCCGTGCAACTTCAACTTTCAGTTGCA ACTTCAACTTTCAGTTGCAACTTCAACTTTCAGTTTCAGCGCGTTAGCCA GTGCAATCTCAACTTTCAGTTTCAGCGTCAACCAGTGCAACCTCAACTTT CAGTTTCACCTTCAACTTTCAGTTTCAGCGTCAGTGCCCTGTGAGGTCAA CAGTCGAGGGGGCGCATGGGGGGCATATCGTACGACGTGCGCGGCCTCAC GGGCAGCAACGCGCGCGCGCCCGTGGAGCTGCGGCGGCGGCGCGTCGAGG TCCGTGTAATTTCACAGTTTGAATTCAGTGTCTGTAGGAGACGAAGGGTA GAGGGGTGTGTGCGGGCGTCATGGGGGGTAGCGGGTCGCGTTTGCGAGTA TGAGCGGCGGTGGCGCAGCATTGCGGCGGGCGATGTGCTTGATCGCCAAG TACGCAGCCAGTGTGCAGCTGCTGTCGCGCGACGGGCGGATGAGCTGACA TGCGGGTCGAGGTTGACAAAACTTCAACTTGAGATGCAGCATCAGCCAGG CCAAAGTGACAGGCCTCGTGAGGGGAAGGGCAGGGGAGGGGCGCGCGTGT CCACACGGAACGGCAGCGCGCGCCGCCGAGCGCAGCGGTGCAGCGGCGGC GCATTTGAGTTTCACGAAGATCAAACATATCAGCATCAGCAGTATCCGCC AGCAGGGCTTCATGAGGCGAAGGGCAGAGGGGAGAGCGAGCGGGGGTGCA CGGCGGCGGCGCATTTGTAAGCAGAGAATATGAGAGGGAGGGGATTGCGA TGCGCACGGCAGGTCATTCTGAGGTCGGCAGCAGCCTTTCTCTACCAGGT CACGCGGGTCGCTGCAAGTTCGAGCGCTCTGACGCGTTGTTGAGGCACAG GATGGTGTTTGCGATGCCGCAGCGGGCAGCTGTGCACGCGCGTGCGGCGC CGCGGGCCGCGATACGCGTCTCTCGCTGTGCATGGCGTTGTTGGGGAGGT GGACGCCCCCGGAACAGGAGGGGGATGGGGCACAGTGCAGGCGATGGGGG CGAAGGATGCACGCGCATGCGCCGGTGCGCTGCACGCACATCGGACGGGC TGGACCGGGTCAACAGACGCTATTGAAGTGGTGGCAGACGCGTGCTCATG AGACACAGCAATGACGGGACCCATGCGCTCGCTGCGCGGCAGTCAGCGCT GTCGAAGGTAGCAGCGGAGCCGCGCCGCGCTGCAGCTGCCTGCTGTCGAA CTCCAACACTACACCACATGAACGCCGCCGTGCTGCTGACCCCCCCGCCC TCCCCCCCCCCCTTGTCCCCCCGCCTTCCCGCCCCTGCCCCCCTCCCCCC CCCCCTCAACAGCGCAAGGGCAGCGTAGAGATGCTGGACATCGCCGAGTC CGTGCGCCGCAGCCGCAGCTCCTTCAACGGTCTGAGCTCCGTCGAGGAGC GCGGCGGCAGCTACGCGCCGTCGGCTGACATCGGGCGGCCGGCCTACGCG GAACCCACGGCAGCGCCGCCGCCACCGCCGCAGATAGGCAACGGCCAGAA GAGCGAGGTGCGTGCAGACATTGTGGTCATGTAGTCCACTTCGTCTTGAA GTTTTAGTACAGCGCGTGGCAGCGCAGCGCCGCTGCCGCCGCCGCAGATA GGCAGCGGCCAGAAGGGCGAGGTGCGTGCCGATGTGATGTAGTGGAGCGC ACAGCAGCGCAGCCGATGCAGATCGAACAGCGATGCGCGTGCAGACGTTC ATGTTGTGGTCATGATTGAAGTTTGAGTGGAGCCCACGGCAGCGCCGCCG CCGCCGCCGCGGATAGGCAACGGCCAGAAGAGCGAGTGGAGGAGTGCAGG CGTGTGAACGCTGGTGATCAGGTGTTTTGGCACCGGCACGCGGCGGTGCA GCATCGGCAGCAGCGGCAACGGTCTTCAACCAAGTCTGCGTGGTGAGCGG GCGGGGTGGGCGATGCGCCGGAGCGCGCAGCTGCTGTGCGCAGGCGTGCG CGTGCGCCCTGCGGCGCCGCCGTGCGCCTCAGTGCTCAACCATGCGCGAG GCGTCAGCGGCTCAATGCTCAGCGCATGGCGATGCGTCCGGAGTGTGGCG CGCAACGCATCCAATGCTCTCGCAGCGGGCGCGGCGGCGGCGGCGCGTTC GGGGCGTGCCCAGCCATGCTGCGCAGACTCCAGGGACGTAGGGGTAGGGC CAGTGTTCGGGCTAAGGATAAGCCGCTGCAGAGACTCCAGGGACGCTGCG ACCGATGCGCCGTCGTCGTTTGCATCCTGTGTGGAAAGGCGTGGGTGCGC GTTCCTTGCGCGTGTGACCACGCAGCAGGGATAGGGTTAGGTTTAGGGGT GAGGGGTAGCGTCGGGCTGGGCTTTTGCGCACTCATCACGCAGCTCCGTT GCTGCGACGCGCCTGTGGGTGCGATCGCTGATCCCCTGTGAGAGGGGGTT TGATGAATAGGAGCAGGGCTTGCATCACCGTACTCGTTAGCGTTCACATA TCGTCACGACCATGGGAGGAGGGGTCAAGGAATAGGGGTAGCACAACGGT GAGACGGAAGACGTCTCTCGCGCAGTGTGAACTGAACATTGCGTGACAGT GAACACAATATAATGTTAGTGGTCTCAATTGCCGCAATCACGTCGCCTGA TTCGGTCACAATAGTGCCTTGGCAACATTGTCAGAAGTGATCGTCGATGC GCTTTGAGACACTTTCAGGTTTCCACACAACATATCACGAGAATTCTGGT AGGAGGCTGGACATCTGCCGCCTGGGCTTCTTTGTGCCCTCAGCGACAAT CACTACATCAGCTTTGACCCCCTGGACCGTGTTGCGCGTTCCGATCGCGC CAGGCGGCGGGGTGCGGCAAGCTGCTGCGCGAGCTCAAGGCGATCGTTGA AGTTCACCTGCACCCCGGCGACATACTTCAAGTGGAGCGCAGCGACGGCG GGTGAGCAAGCTTGTCCCCTGCCTTTCGGCACCGCCTCACGTGCCACGGC GCGCCGAGTAGTGTTGCTTGTGCCTCGGCGGCGCCGATGATGTATATTCA AGCCAGGCTGCTTTGGGGCTGGCAGTTGACGTTACCTTGACAGAGCATCG CCATGCTTTGGCGCGCTCGCTTTAGCGGCGGCGGTCGCACGCACGATGTG TTACTCGGCAAGACGGCGGAGATGCATCGCAGCGGTCACATTGTATGCGT CTATCATCTGCTCTCATCAGCAACGTCGCCGTCATCTCTGGCCGCTTTCA CAGCCGTTTTGCCAACAGGGCGTGCCTGTGCTCACTGCATACGGTCTGCC CGAACGAGTATGTTCCAGAGCGTGTCTTCAAACTGGTCAGCGCCTGCCTG TTCCCCAGGGTCTCTGCCTGTGCGCGCATGCACACGCGCCGTCACCTCAC ACCGTTACTCTCCCCCCCTTGTCACGCGCGCAGCATGAGCACTGCCACCG ACTACGACAAGCTGCTGGGGGAGAGCGACCAGCTGCACCGCGCGTACCTC GCGTCCCTGCTGGCCGACCAGAACTCCAAGCTGACGTGCTTCTGCACGCG CCCGGCGGTGTACCTGCCTGGCTTAAACTTTGTGAGTTCAACTCTGTTGA CAGTTGTAGGTTCAACTCTTCACAACAGCTGAAGTTCACCTATTTCATGC TAAAATGGCAGTTGTAGGTTCAATGGATAGTGCACGCTTTGGCTGCGCGC CTTGGCTGCACGCTGTACAAGTTTGCCAAACCTTGCAGGTCATAGGGAGG CGTCCTTCAGTAGTAGTGCTCTCAGTGTCCCTCAGTCATAGGGGGGCGTC CTTTCAGTAGTACTCCCAGTCTCCCCCGCACTGAGGCGAGCATACGGCGG CGGAGCATGACACCCACGTGCCCCAATTTCATACCGTAGTTGCTCCCGCG CATAGGTTTGTGCAGTAGGCACATGCAGTAGGCTGTGTAGGCGCCATATG TACTCCGCCGGTTCGCGCGTCGTCAGTCGGCACAAAAGCGTCGCACGCGC GATGCGCAGCGCTGCACGCAAAAGAAACTCGCGCGATGCAGCGCCGTGTG AATGGGGTGGGAAGCCGTGCCCTCATGCGGACGATGCGTTCGCGCTCACA GCAGCGCTCGACGCCGGCTCGCCGTGCGCGCTTGAATCAAAACGCAACTA CGCCTTCACGGTATGTGCTTGTGTGAACTGACCTGCCGCGCCTCTAACCC TAACCGTAACCCTAACTTTTACCCTTGTCTGGCCCCGCCCTCACCTTGCG CAGCTCTGCGAAGTCGTCGGCACCTTCATGCTCATCTGGACCGTCCTGAT GCTGGAGCTGCGAGTAGAGGTGAGCGGCGCTGCACGACTCACTCATGACT CACTCACTCGCTGCACTGACTCCTTTGAGCCGAGTCAAACTGACGGCAGC GCACGTCGCAGCTCGCTGAGCACAGAGGGCGCGTTTGCTCTCTACCGCGA GCGCCGCCGCTGCCCAAAAGAGAACTTTTTTGATAAAGAATTATGATTCG CGAAAGTTGTAGAAACTACTGCTAATCACAAGGCGCTTGCCACGTGCTTT GCGAGAGTTTACACTGGCACGACTAGGGTGAGGCCGGCGGTCACGCGTGC TGACACGCGAGGGAGGCGTTGAGCTCGCAACTGTGTCGCCACCATAAGTC TTGGCGCCACAGACCGCCACGACTTCCACATGTGCAGCGCGTCCTGTCGA GCGCTTAGCACAACAGCCATGCAACAGCGCAACGGAACAGGTTATTGGCG CTGCGCCTCTCACAGCCCGTGTGTCATCAACCAACATGGCCAGTTGGCAG CCCATGCAGCGCTCGCCAACGGATCATCGCCGCCGCGCTGCCCACCGCTT CTGTAGGCAGGTAGATCGATATACAGCTACCCATACATACCCATACCGCA TAGCTGAGCGCTGCTCCGTGTGCCGCCGCGCCGCGCAGCTCCTGCCGCAA AGCGCCAAGGACAACGGCTACCTCATCACGCAGGCCTTCCTCGTTGGCTT CGTCGTCGTCGGCCTCATCATGGGCATGGCAGGGCCCACGGGCTACGCCG CCAACCCCGCGCGCGACTGGGGGCCGCGCTTAGCGCACTTCGTGCTGCCC ATCCCCAACAAGGGCTCCTCAGAGTGGTGAGTCACCGCTGCAGTTGAGGT TTGCTGTGAAGTTGCTGTAAATCCCGCGCGTGTGACTGGGGGCCGCACTT CGTGCTGCCCATCCCCAACAAGGGCGCCTCGGAGTGGTGAGTCACGCTGC CGCAGTTGAGGTTTGATGTGAGTCACGCTGCCGCAGTTGAGGTTTGATGT GAAGTTGCCGCGGTCTGCCCACTTCGCGCTGCCCATCCCCAACAAGGGCG CCCCAGAGTGGTGAGTCACTGCTGCAGTTGAGGTTTGATGTGAAGTTGCC GCGGTCTGCCCAGTTGTGCTGCCCATCCCCAACGAGGGCGCCTCGGAGTG GTAAGCCCCCCCGCTGCAGTTGAGGTTTGATGTGAAGTTGCTGTGGACCC CCGCACGCGTGACTGGGGGCCACGCTTCGCGCACATCGTGCTGCCCATCC TCAACAAGGGCGCCTCGGAGTGGTGAGCCCCCCCGCTGCAGTTGAGGCTT GATGATGAAGTTGCCCACTTGATGCTGCCCAACAAGGACGCCTGGCCTCC GAGTGGTGCGTCACCGCTGCATTTTTTAAGTTGCTGTAAATCACCGCTGC AGTTGGGCTGTGCTGTCTCCGGCGAGCGGCTCACGCGCAGGATGCGCGCG ATGGCCTTCAAGGCGGTGCGTGTGGTGGCTCGCCGTCTCCAAGATCGCAC TTCACGCACTCAAGGTTCAGGGGCGGAAACCCCATGAGGTGATTATTCTG CACCACGTTGTATGCAGCACGTTTGCTCCTACTGCGCTTTTGGTGGCGCG CGAGATGGCCTTCGCGACCTAGGCGTCTGCGCGCTGCCGCTTTCGAGGGT GCTTGCATGAGCTGTGGCGTTGCTGTCAATCGGCGATCGGCTCCACGCAC GGGATGCGGGAGATGGCCTATACGGCGGTGCGTGGCGACTCGATGCCTGC AAGTTTGTCGGCAGAGACGGCAAGACCGCGGTACACTTCCTGGCCTGCCG CGGCGACGTCAAGATCTACAGTCCGCACACTCACCACAGGAGCGCCGATT TACTGCACAGCGGCATGGCGAACCTCGACGACCACGTATCCCTCACGGAG CTCTTCGAGTCGACCCACGAATCGACCCACAAGTCAACCCACGAGTCGAC CCACGAGTCGACCCACAAGTCGACGCACGAGCACTGTGGGGTTACGTGGT CGTGGGAGTTCGCCATGCCGCCTTGCAGTACGTCGGCGCTCCTGTGGGTG TGCGGACTGTATATCTTGACATCGCCGTGGCAGGCCGAGGAGTGGACCGC GGTACTGTCATCTCTGCCAACGAACTTGTAGGCGACGCCGCTGGCCCCGG TCTGGTCTCGCCCCCGCGCATGCTGAGCGTCACGGCCATGCACATCTTGA AGAAGCGCTTGTCCGCATGGAATCCGTGCAGCGCGTTCGTGGTGGTGGCG CCGGTTTCGGGGTCCTTGCCCTCGCGAATGACAATGAAGCACCGCGAAAG AGGAGCACCTGAGGCGGGCGGAGGGGTATGTACCGAGTAAAAAGGCGAAT ACGCGTCCTCTCAGTGTGCTGCACATCAAGCGGCCGTCGCTACTGGCTGC GCGTCCATCGCACTGAATGCGCCTCCCCGCGCATGAGAAAAGTGACGCGG CGGCAAACATTAATTACGGCGTTCCTGACGGCAAAAACATCCGGGGGAAG AGAAGGGCATTTTTACCTGGATTTTGCTTGATTTATAATAAACGAGTAAA ACACCAAGTAAAAACGGGAGTCTCTGAGTTGAGTTGTAATATATGGAGTT GCTGTGAAGCCCGCGCGCGCGGTTGTGGTCCGCGGCTCAATGAGGACTGC GCGGGGTGGCGAGTCACCGCTGCAGTTGCAGTTTGATTTTCAACCCGCTG TGAAGCCCCCGTGGGCTCAGGCGAGCCCGCCTTCATGCTGCCCATCGCAG ACAGGGTCTGCAGCAGAGTACCTAGCCTCCAGAAGCCTACAAAGCTGTTT CAAGGCAAACATGCAGTGGGCGCAGCAGCAACGCGCACGAAGCGGCCACA AGTATGCTGTGTCGTATACGTACTACCTACGCGTGGTTGCATATACCACA CGCCAGTACCGTACCGTTTTCACTCCATCATACATACCAGCTCGCTCTGC TCTGCCCTGCATTCGAGTGGCCTGCGCTGGAGTGAGTTGCCTGCGCTAAA ATGAGGCAGCTCCCAGCCTGACGGTTCTTCTCAACGCTGAGCCGCTTCCC CTTCTTGTTGCCCCCCCCCCCCCCCTCCCCCCCCCCCCCGACGGCGCAGG TACTACGCGCCAGTGCCGTTCTTTGGCGGTTACGTGGGCGGTTTCCTGGG CGCGCTCGCGTTCCACCTGTGCCGCTACCTCTACAACTTCCCCGCCACGT TCGAGGGGCCCGAGAACTTTGGCGGCAACTGGAACTGCGCCGGCAAGCAC TGCTTCCCGCTGCCAGAGTAGCGCCGGCGCTGATGCCGATGGCGCTGCAC TACAGTACTAGCGCTCTGCTAGCGCCGAGCCCTCTTTACAGGCATCTGTG GCATGGGCTCAGCAACTGTCAAGGGGCCCGTTGGCCCCTCCCACGAACCC CCGCG
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Coding sequence (CDS) from alignment at Contig_170:27036..40490-

>mRNA_15238 ID=mRNA_15238|Name=jgi.p|Trimin1|353554|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2640bp|location=Sequence derived from alignment at Contig_170:27036..40490- (Tribonema minus UTEX_B_3156 )
ATGGACGTAGAGCTGACCGACGAGGATCTGCAGAAGCTATATGCGTGGGT
GGACGAAATACCACTAAGCAGGCCCAAGAGGAACATCGCTAGAGACTTCA
GCGATGGTGTATTGACAGCGGAGGTGGTGGCGCACTACTTCCCGCGCCTC
GTGGAGCTGCACAACTACTCCGCCGCCAACAGCGTCGCGCAGAAGCTCTA
CAACTGGGGCACGCTCAACACGAAGGTGTTCCGGCGGCTGGCGTTCCAGC
TGCAGCAGCCGGACATAGAGGCGCTCGCGCAGTGTAAGCCAGGCGCGGTG
GAGAAGCTCCTGTACGAGCTGCAGCTGCGCATGGCCAACTACCGCGCGAA
GCAGCGCAGGGCGTCGGCGACGTCCGCGCAGAGCGGCGAGAGCGAGAACG
GCCAGGACACGTCGCAGACCGGCGAGGACAGCTCGGACAGGGGCGGCGGC
GGCAGCGCGGCAGGACGGTCCGCCCCAGGCCCAAATTTGCGCGGCGTGGT
GACGATTTTGGAGCAGAAGGTGGCGCGGCTCGAGCAGCTCGTACACATGA
AGGACCTCAAGATCGCGCGCCTCGAGGCAGCGCTGCAGGCGGCGGAGGAC
GCGCTGGACGGGGAGCGGCGCGCGCGCGAGCGGCTGCAGCAGCAGCAGCA
GCAGCAGGCGCCGCAGCAGCAGCACGGCCATGCGTACCAGGCGCAGTACC
AGCAGCAGCGGCAGCAGCAGCGGCAGGAGTACGATGACCAGCAGCTGAGC
GCTGACTTTGATGAGCTGCAGCTGCAGCGAGGCGGCGGCGGCGCGGCGCC
GGTGCGGCGGATGTCGGGCAGGGCCTTCACAGGCTACCTCTCCTGGCGCG
ATGCTCTCCTGCTGATGATCGCCGACTACATCGGCGCGTTCCTCGGCGGC
ATCCTGGTCTACCTCACGTACCTGCCGCACTTCAGCCTCGTGCCGCCGGC
GCCGCAGCGCCCGCACTGGCCGGAGACCACGATACTGCCGCCGGAGAACG
GCGGCACGCGCGCGGCGCTCATATCGTACGACGCGCACGGCCTCACCGGC
AGCACCGCGCGCGCGCCCGTGGAGCTGCGGCGGCGGCGCGTCGAGTCGAG
GGGGCGCATGGGGGGCATATCGTACGACGTGCGCGGCCTCACGGGCAGCA
ACGCGCGCGCGCCCGTGGAGCTGCGGCGGCGGCGCGTCGAGCGCAAGGGC
AGCGTAGAGATGCTGGACATCGCCGAGTCCGTGCGCCGCAGCCGCAGCTC
CTTCAACGGTCTGAGCTCCGTCGAGGAGCGCGGCGGCAGCTACGCGCCGT
CGGCTGACATCGGGCGGCCGGCCTACGCGGAACCCACGGCAGCGCCGCCG
CCACCGCCGCAGATAGGCAACGGCCAGAAGAGCGAGATAGGCAGCGGCCA
GAAGGGCGAGGCGGCGGGGTGCGGCAAGCTGCTGCGCGAGCTCAAGGCGA
TCGTTGAAGTTCACCTGCACCCCGGCGACATACTTCAAGTGGAGCGCAGC
GACGGCGGCATGAGCACTGCCACCGACTACGACAAGCTGCTGGGGGAGAG
CGACCAGCTGCACCGCGCGTACCTCGCGTCCCTGCTGGCCGACCAGAACT
CCAAGCTGACGTGCTTCTGCACGCGCCCGGCGGTCGCTGCACGCAAAAGA
AACTCGCGCGATGCAGCGCCGTGTGAATGGGGTGGGAAGCCGTGCCCTCA
TGCGGACGATGCGTTCGCGCTCACAGCAGCGCTCGACGCCGGCTCGCCGT
GCGCGCTTGAATCAAAACGCAACTACGCCTTCACGCTCTGCGAAGTCGTC
GGCACCTTCATGCTCATCTGGACCGTCCTGATGCTGGAGCTGCGAGTAGA
GCTCCTGCCGCAAAGCGCCAAGGACAACGGCTACCTCATCACGCAGGCCT
TCCTCGTTGGCTTCGTCGTCGTCGGCCTCATCATGGGCATGGCAGGGCCC
ACGGGCTACGCCGCCAACCCCGCGCGCGACTGGGGGCCGCGCTTAGCGCA
CTTCGTGCTGCCCATCCCCAACAAGGGCTCCTCAGAGTGGATGCGCGCGA
TGGCCTTCAAGGCGTTTGTCGGCAGAGACGGCAAGACCGCGGTACACTTC
CTGGCCTGCCGCGGCGACGTCAAGATCTACAGTCCGCACACTCACCACAG
GAGCGCCGATTTACTGCACAGCGGCATGGCGAACCTCGACGACCACGTAT
CCCTCACGGAGCTCTTCGAGTCGACCCACGAATCGACCCACAAGTCAACC
CACGAGTCGACCCACGAGTCGACCCACAAGTCGACGCACGAGCACTGTGG
GGTTACGTGGTCGTGGGAGTTCGCCATGCCGCCTTGCAGCGACGCCGCTG
GCCCCGGTCTGGTCTCGCCCCCGCGCATGCTGAGCGTCACGGCCATGCAC
ATCTTGAAGAAGCGCTTGTCCGCATGGAATCCGTGCAGCGCGTTCGTGGT
GGTGGCGCCGGTTTCGGGGTACTACGCGCCAGTGCCGTTCTTTGGCGGTT
ACGTGGGCGGTTTCCTGGGCGCGCTCGCGTTCCACCTGTGCCGCTACCTC
TACAACTTCCCCGCCACGTTCGAGGGGCCCGAGAACTTTGGCGGCAACTG
GAACTGCGCCGGCAAGCACTGCTTCCCGCTGCCAGAGTAG
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