mRNA_1522 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Match: A0A835Z6T1_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6T1_9STRA) HSP 1 Score: 848 bits (2191), Expect = 2.850e-310 Identity = 437/437 (100.00%), Postives = 437/437 (100.00%), Query Frame = 2
Query: 20 MALLMTGVYGRPMHTASFTSPADVAHTLNDMGKSAMTIHQLYTDLYRNSLAQTQYISALQHHIVKLQQERSLLWDAARKKGVHLIDSASLEAIIKRQSEGTDAESDAENPTPASSDVPIKVETSEDAETREKFVAMELRDGSIHVLHAGAGAGKTTLSIRLMKSVAERYPEAECIALTFNVAAAADGEAKRRFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQEYVDWTLYTTFRFGQAVCDFVNVRHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLPSTWDKSLFKKIDKLKVIAILARVNQEDAADSIVLSTVHGFKGLEADRVLVTRAVRNARNDDEIRLLYVAVTRAKHTLYLQRCRSG 1330
MALLMTGVYGRPMHTASFTSPADVAHTLNDMGKSAMTIHQLYTDLYRNSLAQTQYISALQHHIVKLQQERSLLWDAARKKGVHLIDSASLEAIIKRQSEGTDAESDAENPTPASSDVPIKVETSEDAETREKFVAMELRDGSIHVLHAGAGAGKTTLSIRLMKSVAERYPEAECIALTFNVAAAADGEAKRRFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQEYVDWTLYTTFRFGQAVCDFVNVRHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLPSTWDKSLFKKIDKLKVIAILARVNQEDAADSIVLSTVHGFKGLEADRVLVTRAVRNARNDDEIRLLYVAVTRAKHTLYLQRCRSG
Sbjct: 1 MALLMTGVYGRPMHTASFTSPADVAHTLNDMGKSAMTIHQLYTDLYRNSLAQTQYISALQHHIVKLQQERSLLWDAARKKGVHLIDSASLEAIIKRQSEGTDAESDAENPTPASSDVPIKVETSEDAETREKFVAMELRDGSIHVLHAGAGAGKTTLSIRLMKSVAERYPEAECIALTFNVAAAADGEAKRRFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQEYVDWTLYTTFRFGQAVCDFVNVRHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLPSTWDKSLFKKIDKLKVIAILARVNQEDAADSIVLSTVHGFKGLEADRVLVTRAVRNARNDDEIRLLYVAVTRAKHTLYLQRCRSG 437
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Match: A0A835YZ90_9STRA (UvrD-like helicase ATP-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ90_9STRA) HSP 1 Score: 593 bits (1529), Expect = 6.130e-211 Identity = 319/376 (84.84%), Postives = 328/376 (87.23%), Query Frame = 2
Query: 20 MALLMTGVYGRPMHTASFTSPADVAHTLNDMGKSAMTIHQLYTDLYRNSLAQTQYISALQHHIVKLQQERSLLWDAARKKGVHLIDSASLEAIIKRQSEGTDAESDAENPTPASSDVPIKVETSEDAETREKFVAMELRDGSIHVLHAGAGAGKTTLSIRLMKSVAERYPEAECIALTFNVAAAADGEAKRRFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQEYVDWTLYTTFRFGQAVCDFVNVRHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLPSTWDKSLFKKIDKLKVIAILARVN 1147
MALLMTG YGRP+HTA FTSPADVAHTLNDMGKSAMTI QLYTDLYRNSLAQTQYISALQ+HIVKLQ+ERSLLWDAARKKGVHLIDSASL+AI+KRQ E TDAESD ENPTPASS EDAETREKFVAMELRDGSIHVLHAGAGAGKTTLSIRLMKSVAERYPEAECIALTFNVAAAADGEAKRRFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQ+ SPAVAHPDNTNTRIEIVDNDQ IMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTL STWD+SLFKKIDKL+V L+ VN
Sbjct: 1 MALLMTGAYGRPIHTARFTSPADVAHTLNDMGKSAMTIQQLYTDLYRNSLAQTQYISALQYHIVKLQKERSLLWDAARKKGVHLIDSASLDAIVKRQREETDAESDTENPTPASS---------EDAETREKFVAMELRDGSIHVLHAGAGAGKTTLSIRLMKSVAERYPEAECIALTFNVAAAADGEAKRRFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQD---------------------------SPAVAHPDNTNTRIEIVDNDQAIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLRSTWDRSLFKKIDKLQVPQWLSAVN 340
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Match: A0A836CA48_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA48_9STRA) HSP 1 Score: 436 bits (1120), Expect = 7.550e-142 Identity = 246/412 (59.71%), Postives = 274/412 (66.50%), Query Frame = 2
Query: 392 EDAETREKFVAMELRDGSIHVLHAGAGAGKTTLSIRLMKSVAERYPEAECIALTFNVAAAADGEAKR---------------------------------------------------------------------------------------------------------RFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQEYVDWTLYTTFRFGQAVCDFVNVRHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLPSTWDKSLFKKIDKLKVIAILARVNQEDAADSIVLSTVHGFKGLEADRVLVTRAVRNARNDDEIRLLYVAVTRAKHTLYL 1312
EDA+TREKFVAMEL DG+IHVLHAGA AGKTTLSIRLMKSVAER P+ ECIALTFNVAAAADGEAK RF MAKYKLVIVDEAQDLNLVMI+LMT IY+ATTTVYVGDSAQAIYGFM+CTDVK+ L+QEYVDWTLYTTFRFGQA+CDFVNVR+LC SPAVAHPDN +T IEIV+ D I+ GAHTVLVR+WTEIL ADRYT+AG SV ID++KV EI CA+S +PSTWDKSLFKK+DKLKV+ IL RVN+ D + SIVLSTVHGFKG E RVLVTR+VRNARN++E+RLLYVAVTRA+HTLYL
Sbjct: 39 EDAKTREKFVAMELSDGTIHVLHAGADAGKTTLSIRLMKSVAERQPDVECIALTFNVAAAADGEAKVNGAERLTFKTIDSLLYSLYANDVNDATKVDFNVAEEVMDMANLVLRRAVTPEQAMSYADQLETACNSGDPTNLGAVSRILWNAGMKGTWWSHAMLRVRARDDPACRFKKAMAKYKLVIVDEAQDLNLVMISLMTHIYNATTTVYVGDSAQAIYGFMQCTDVKNELKQEYVDWTLYTTFRFGQAICDFVNVRNLCVSPAVAHPDNIDTTIEIVE-DNTILSGAHTVLVRRWTEILDLADRYTEAGHSVFIDREKVDEIKKCATSMMPSTWDKSLFKKVDKLKVLVILDRVNKADHSVSIVLSTVHGFKGRETLRVLVTRSVRNARNEEELRLLYVAVTRARHTLYL 449
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Match: A0A836C8L3_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8L3_9STRA) HSP 1 Score: 334 bits (856), Expect = 2.850e-104 Identity = 196/418 (46.89%), Postives = 231/418 (55.26%), Query Frame = 2
Query: 392 EDAETREKFVAMELRDGSIHVLHAGAGAGKTTLSIRLMKSVAERYPEAECIALTFNVAAAADGEAK---------------------------------------------------------------------------------------------------------RRFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQEYVDWTLYTTFRFGQAVCDFVNVRHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLPSTWDKSLFKKIDKLKVIAILARVNQEDAADSIVLSTVHGFKGLEADRVLVTRAVRNARNDDEIRLLYVAVTRAKHTLYLQRCRSG 1330
EDA+ E+FVAMEL DG IHVLHAGAGAGKTTL+IRLMKS++ RY E +ALTFNVAAA D EAK RR+ M ++KL+IVDEAQDLNLVMI++M QI+HA T VY+GDSAQAIYGFMECTDVKHTLQQ+Y+DWTLYTTFRFGQ VCD+VN R LC SPAVAHP N +T IE++DN + IM G HTVL LPS WDK LFKK+DKLK + IL ++N DA++SIVLSTVHG+KGLEA+RV+VT +VRNARNDDE++LLYVAVTRA+ L R +G
Sbjct: 74 EDADNCERFVAMELHDGDIHVLHAGAGAGKTTLAIRLMKSISTRYRAVEAMALTFNVAAAVDSEAKVNGAERLAFKTIDSFLYALYSDEIKGAMKVDFNVTDEVMEMVHCVLKRRVTPEEARSYGDQLETACNRGTCTGLGAVARQVWNEGMKGTWWSHSMLRVRARDDPRRRWVEAMKRFKLIIVDEAQDLNLVMISMMRQIHHAATMVYIGDSAQAIYGFMECTDVKHTLQQQYIDWTLYTTFRFGQKVCDYVNERRLCVSPAVAHPQNFDTTIEVIDNIETIMPGPHTVL--------------------------------------LPSAWDKRLFKKVDKLKALEILGKINLTDASESIVLSTVHGYKGLEAERVVVTCSVRNARNDDELKLLYVAVTRARIAPSLVRAFAG 453
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Match: A0A835YX22_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX22_9STRA) HSP 1 Score: 155 bits (391), Expect = 2.480e-38 Identity = 98/252 (38.89%), Postives = 134/252 (53.17%), Query Frame = 2
Query: 593 RFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQE-YVDWTLYTTFRFGQAVCDFVNVRHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASST-LPSTWDKSLFKKIDKLKVIAILARVNQ--EDAADSIVLSTVHGFKGLEADRVLVTRAVRNARND---DEIRLLYVAVTRAKHTLYLQRCRS 1327
R+ +A Y ++VDEAQD+N+VM+ L++++ V+ D+ Q +YGFM C DV L ++ YV WTLY TFR+G AVCDFVN LC +P +T + + + H L W + LQ ADRY AGR VS+D K E++ S +T + F++I K V IL V + D + LSTVHGFKGLEA V+V V +A + YVAVTR+ LYL R
Sbjct: 234 RWQAAVADYDTIVVDEAQDMNVVMLDLISEVKEQHMIVFAMDAGQKLYGFMGCRDVTTLLPRDSYVLWTLYLTFRYGSAVCDFVNALRLCRAPTCPALGAPDTAV-VSTRSATAVQEPHVALFATWADALQAADRYLAAGRRVSMDSAKREEMLTALRSPEANATSCQQAFRRIGKAGVARILHAVGDCGDKVKDDVRLSTVHGFKGLEAGAVVVAANVIDANGSFTSSQKARAYVAVTRSTLRLYLLERRK 484
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Match: A0A836CDY6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDY6_9STRA) HSP 1 Score: 124 bits (310), Expect = 7.340e-27 Identity = 72/211 (34.12%), Postives = 113/211 (53.55%), Query Frame = 2
Query: 593 RFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQEYVD-WTLYTTFRFGQAVCDFVNVRHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLPSTWDKSLFKKIDKLKVIAILARVNQ--EDAADSIVLSTVHGFKGLEADR 1216
R++ + Y +VI+DEAQDLN+VM L+ ++ V+VGD Q +Y FM C DV L E + W LY +FR+G+ VCD +N L P A +T ++ V + + + H L W + + A++Y + GRSVS+D K E++ A S + + K++ + + IL+ + EDA D + +STVHG+K DR
Sbjct: 87 RWSAALQDYDVVIIDEAQDLNVVMAELVMEVAPQKMLVFVGDGGQKLYAFMACRDVTEILPPESFNAWILYMSFRYGKKVCDLINTLQLPLVPTFAAEGAPDTLVQAVGSGLEVAEP-HVSLFATWADAIAAANKYLERGRSVSMDSVKRHELLEAACSEDDDAGYQQVLKRVSRAGALRILSAIRDAGEDAMD-VFISTVHGYKVGNGDR 295
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Match: A0A835ZHA6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHA6_9STRA) HSP 1 Score: 122 bits (305), Expect = 9.480e-27 Identity = 69/205 (33.66%), Postives = 111/205 (54.15%), Query Frame = 2
Query: 593 RFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQEYVD-WTLYTTFRFGQAVCDFVNVRHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLPSTWDKSLFKKIDKLKVIAILARVNQ--EDAADSIVLSTVHGFK 1198
R++ + Y +VI+DEAQDLN+VM L+ ++ ++VGD Q +Y FM C DV L E + W LY +FR+G+ VCD +N L P A +T ++ V + + + H L W + + A++Y + GRSVS+D K E++ A S + + K++ + + IL+ + EDA D + +STVHG+K
Sbjct: 229 RWSAALQDYDVVIIDEAQDLNVVMAELVMEVAPQKMLIFVGDGGQKLYAFMACRDVTEILPPESFNAWILYLSFRYGKKVCDLINTLQLPLVPTFAAEGAPDTLVQAVGSGLEVAEP-HVSLFATWADAIAAANKYLERGRSVSMDSVKRHELLEAACSEDDDAGYQQVLKRVSRAGALRILSAIRDAGEDAMD-VFISTVHGYK 431
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Match: A0A835Z086_9STRA (DNA helicase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z086_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 6.060e-13 Identity = 71/249 (28.51%), Postives = 118/249 (47.39%), Query Frame = 2
Query: 608 MAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQEYVD-WTLYTTFRFGQAVCDFVNVRHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLPST----WDK---------SLFKKIDKLKVIAILARVNQEDAADSIVLSTVHGFKGLEADRVLVTRAVRNARNDDEIRLLYVAVTRAKHTLYL 1312
+A Y+ V++DEAQD+ ++A +++++ YVGD+ QA+Y + + +L + + D L+ ++R GQ VC+ VN S V+ D I ++T L R +L+ A T +K KV ++++ L S W K L K++D+++V R +Q+ +V STVHGFKG EAD V R + D++ ++ VA TRAK L +
Sbjct: 205 LANYQCVVIDEAQDIKPAVMAGLSRLHGTKPVFYVGDTDQALYAYDGAVNALSSLSESFTDKLVLHGSYRCGQQVCNLVNENGWASHDMVSLTDRCTV---IAPQLPHAFSASYTYLFRSNMAMLERA-AITPNCYFPDFNK-KVDQLLSSKRQALESALQPDWGKYLTFKRKVTELTKRVDRMRVKR--RRKDQQ----CVVFSTVHGFKGCEAD---VVRLGADIMADEDRKIKLVAATRAKKMLIM 439
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Match: UPI00200CD8E8 (AAA family ATPase n=1 Tax=Frankia sp. AgB32 TaxID=631119 RepID=UPI00200CD8E8) HSP 1 Score: 73.6 bits (179), Expect = 2.380e-10 Identity = 84/292 (28.77%), Postives = 120/292 (41.10%), Query Frame = 2
Query: 578 GEAKRRFANFMAKYKLVIVDEAQDLNLVMIALM-TQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQEYVDWTLYTT--FRFGQAVCDFVNV--------RHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLPSTWD---------------------------KSLFKKIDKLKVIAILARV-NQEDAADS-IVLSTVHGFKGLEADRVLVTR--AVRNARNDDEIRLLYVAVTRAKHTLYLQRCRS 1327
G+ RR + M +++++DEAQD+ VM+ ++ TQ+ T V VGDSAQAI F D + VD T Y T FRFGQ + DF N L P PD+T I VI+ + V V + ++ R G + + V A+ + W K + ID+ AI+A + N D D+ I + T H KGL+ V + N+DE+ LLYVAVTRA+ L + C S
Sbjct: 218 GDLSRRGSYSMGA-EILMIDEAQDMAPVMLGIIKTQMRRGTRVVLVGDSAQAINSFTGAVDAFKNIT---VDNTCYLTRSFRFGQDIADFANTILAQLDTPLRLVGKPG--GPDDTGY-IGPCSRPDVILTRTNAVAVSEALTLMAAGQRVNLVGNTAKM----VVTFAKAAADLRENGWTAHPELGCFSSWKQVQDYAEHDELGGDLKLMVDLIDRFGTDAIIAGLANIADPRDADITVCTAHQSKGLQWQDVKLASDFPAPGKLNEDELMLLYVAVTRAQDVLDVTACPS 498
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Match: A0A836CK41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK41_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 5.460e-10 Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 2
Query: 395 DAETREKFVAMELRDGSIHVLHAGAGAGKTTLSIRLMKSVAERYPEAECIALTFNVAAAADGEAKRRFAN--FMAKYKLVIVDEAQDLN 655
D++ R F ++L++ S+HVLHAGA AGKTTL L+ S+ ERY +ALTFNVAAA +G+ + + + Y + +DLN
Sbjct: 13 DSQARIDFTNLKLKNRSVHVLHAGAAAGKTTLCTSLLASIGERYEGVRTLALTFNVAAAVEGQDRNECESCTWQTIYSFIFALYKEDLN 101 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1522 ID=mRNA_1522|Name=jgi.p|Trimin1|348039|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1333bp|location=Sequence derived from alignment at Contig_18:1318174..1321634+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AAGACAAGACACGCTGAAGATGGCCCTACTCATGACCGGCGTCTACGGCAback to top protein sequence of jgi.p|Trimin1|348039 >Trimin1|348039|estExt_Genemark1.C_Ctg_180174 ID=Trimin1|348039|estExt_Genemark1.C_Ctg_180174|Name=jgi.p|Trimin1|348039|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=438bp MALLMTGVYGRPMHTASFTSPADVAHTLNDMGKSAMTIHQLYTDLYRNSLback to top mRNA from alignment at Contig_18:1318174..1321634+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1522 ID=mRNA_1522|Name=jgi.p|Trimin1|348039|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3461bp|location=Sequence derived from alignment at Contig_18:1318174..1321634+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_18:1318174..1321634+ >mRNA_1522 ID=mRNA_1522|Name=jgi.p|Trimin1|348039|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1314bp|location=Sequence derived from alignment at Contig_18:1318174..1321634+ (Tribonema minus UTEX_B_3156 )back to top |