mRNA_1522 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348039
Unique NamemRNA_1522
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Match: A0A835Z6T1_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6T1_9STRA)

HSP 1 Score: 848 bits (2191), Expect = 2.850e-310
Identity = 437/437 (100.00%), Postives = 437/437 (100.00%), Query Frame = 2
Query:   20 MALLMTGVYGRPMHTASFTSPADVAHTLNDMGKSAMTIHQLYTDLYRNSLAQTQYISALQHHIVKLQQERSLLWDAARKKGVHLIDSASLEAIIKRQSEGTDAESDAENPTPASSDVPIKVETSEDAETREKFVAMELRDGSIHVLHAGAGAGKTTLSIRLMKSVAERYPEAECIALTFNVAAAADGEAKRRFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQEYVDWTLYTTFRFGQAVCDFVNVRHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLPSTWDKSLFKKIDKLKVIAILARVNQEDAADSIVLSTVHGFKGLEADRVLVTRAVRNARNDDEIRLLYVAVTRAKHTLYLQRCRSG 1330
            MALLMTGVYGRPMHTASFTSPADVAHTLNDMGKSAMTIHQLYTDLYRNSLAQTQYISALQHHIVKLQQERSLLWDAARKKGVHLIDSASLEAIIKRQSEGTDAESDAENPTPASSDVPIKVETSEDAETREKFVAMELRDGSIHVLHAGAGAGKTTLSIRLMKSVAERYPEAECIALTFNVAAAADGEAKRRFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQEYVDWTLYTTFRFGQAVCDFVNVRHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLPSTWDKSLFKKIDKLKVIAILARVNQEDAADSIVLSTVHGFKGLEADRVLVTRAVRNARNDDEIRLLYVAVTRAKHTLYLQRCRSG
Sbjct:    1 MALLMTGVYGRPMHTASFTSPADVAHTLNDMGKSAMTIHQLYTDLYRNSLAQTQYISALQHHIVKLQQERSLLWDAARKKGVHLIDSASLEAIIKRQSEGTDAESDAENPTPASSDVPIKVETSEDAETREKFVAMELRDGSIHVLHAGAGAGKTTLSIRLMKSVAERYPEAECIALTFNVAAAADGEAKRRFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQEYVDWTLYTTFRFGQAVCDFVNVRHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLPSTWDKSLFKKIDKLKVIAILARVNQEDAADSIVLSTVHGFKGLEADRVLVTRAVRNARNDDEIRLLYVAVTRAKHTLYLQRCRSG 437          
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Match: A0A835YZ90_9STRA (UvrD-like helicase ATP-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ90_9STRA)

HSP 1 Score: 593 bits (1529), Expect = 6.130e-211
Identity = 319/376 (84.84%), Postives = 328/376 (87.23%), Query Frame = 2
Query:   20 MALLMTGVYGRPMHTASFTSPADVAHTLNDMGKSAMTIHQLYTDLYRNSLAQTQYISALQHHIVKLQQERSLLWDAARKKGVHLIDSASLEAIIKRQSEGTDAESDAENPTPASSDVPIKVETSEDAETREKFVAMELRDGSIHVLHAGAGAGKTTLSIRLMKSVAERYPEAECIALTFNVAAAADGEAKRRFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQEYVDWTLYTTFRFGQAVCDFVNVRHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLPSTWDKSLFKKIDKLKVIAILARVN 1147
            MALLMTG YGRP+HTA FTSPADVAHTLNDMGKSAMTI QLYTDLYRNSLAQTQYISALQ+HIVKLQ+ERSLLWDAARKKGVHLIDSASL+AI+KRQ E TDAESD ENPTPASS         EDAETREKFVAMELRDGSIHVLHAGAGAGKTTLSIRLMKSVAERYPEAECIALTFNVAAAADGEAKRRFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQ+                           SPAVAHPDNTNTRIEIVDNDQ IMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTL STWD+SLFKKIDKL+V   L+ VN
Sbjct:    1 MALLMTGAYGRPIHTARFTSPADVAHTLNDMGKSAMTIQQLYTDLYRNSLAQTQYISALQYHIVKLQKERSLLWDAARKKGVHLIDSASLDAIVKRQREETDAESDTENPTPASS---------EDAETREKFVAMELRDGSIHVLHAGAGAGKTTLSIRLMKSVAERYPEAECIALTFNVAAAADGEAKRRFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQD---------------------------SPAVAHPDNTNTRIEIVDNDQAIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLRSTWDRSLFKKIDKLQVPQWLSAVN 340          
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Match: A0A836CA48_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA48_9STRA)

HSP 1 Score: 436 bits (1120), Expect = 7.550e-142
Identity = 246/412 (59.71%), Postives = 274/412 (66.50%), Query Frame = 2
Query:  392 EDAETREKFVAMELRDGSIHVLHAGAGAGKTTLSIRLMKSVAERYPEAECIALTFNVAAAADGEAKR---------------------------------------------------------------------------------------------------------RFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQEYVDWTLYTTFRFGQAVCDFVNVRHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLPSTWDKSLFKKIDKLKVIAILARVNQEDAADSIVLSTVHGFKGLEADRVLVTRAVRNARNDDEIRLLYVAVTRAKHTLYL 1312
            EDA+TREKFVAMEL DG+IHVLHAGA AGKTTLSIRLMKSVAER P+ ECIALTFNVAAAADGEAK                                                                                                          RF   MAKYKLVIVDEAQDLNLVMI+LMT IY+ATTTVYVGDSAQAIYGFM+CTDVK+ L+QEYVDWTLYTTFRFGQA+CDFVNVR+LC SPAVAHPDN +T IEIV+ D  I+ GAHTVLVR+WTEIL  ADRYT+AG SV ID++KV EI  CA+S +PSTWDKSLFKK+DKLKV+ IL RVN+ D + SIVLSTVHGFKG E  RVLVTR+VRNARN++E+RLLYVAVTRA+HTLYL
Sbjct:   39 EDAKTREKFVAMELSDGTIHVLHAGADAGKTTLSIRLMKSVAERQPDVECIALTFNVAAAADGEAKVNGAERLTFKTIDSLLYSLYANDVNDATKVDFNVAEEVMDMANLVLRRAVTPEQAMSYADQLETACNSGDPTNLGAVSRILWNAGMKGTWWSHAMLRVRARDDPACRFKKAMAKYKLVIVDEAQDLNLVMISLMTHIYNATTTVYVGDSAQAIYGFMQCTDVKNELKQEYVDWTLYTTFRFGQAICDFVNVRNLCVSPAVAHPDNIDTTIEIVE-DNTILSGAHTVLVRRWTEILDLADRYTEAGHSVFIDREKVDEIKKCATSMMPSTWDKSLFKKVDKLKVLVILDRVNKADHSVSIVLSTVHGFKGRETLRVLVTRSVRNARNEEELRLLYVAVTRARHTLYL 449          
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Match: A0A836C8L3_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8L3_9STRA)

HSP 1 Score: 334 bits (856), Expect = 2.850e-104
Identity = 196/418 (46.89%), Postives = 231/418 (55.26%), Query Frame = 2
Query:  392 EDAETREKFVAMELRDGSIHVLHAGAGAGKTTLSIRLMKSVAERYPEAECIALTFNVAAAADGEAK---------------------------------------------------------------------------------------------------------RRFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQEYVDWTLYTTFRFGQAVCDFVNVRHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLPSTWDKSLFKKIDKLKVIAILARVNQEDAADSIVLSTVHGFKGLEADRVLVTRAVRNARNDDEIRLLYVAVTRAKHTLYLQRCRSG 1330
            EDA+  E+FVAMEL DG IHVLHAGAGAGKTTL+IRLMKS++ RY   E +ALTFNVAAA D EAK                                                                                                         RR+   M ++KL+IVDEAQDLNLVMI++M QI+HA T VY+GDSAQAIYGFMECTDVKHTLQQ+Y+DWTLYTTFRFGQ VCD+VN R LC SPAVAHP N +T IE++DN + IM G HTVL                                      LPS WDK LFKK+DKLK + IL ++N  DA++SIVLSTVHG+KGLEA+RV+VT +VRNARNDDE++LLYVAVTRA+    L R  +G
Sbjct:   74 EDADNCERFVAMELHDGDIHVLHAGAGAGKTTLAIRLMKSISTRYRAVEAMALTFNVAAAVDSEAKVNGAERLAFKTIDSFLYALYSDEIKGAMKVDFNVTDEVMEMVHCVLKRRVTPEEARSYGDQLETACNRGTCTGLGAVARQVWNEGMKGTWWSHSMLRVRARDDPRRRWVEAMKRFKLIIVDEAQDLNLVMISMMRQIHHAATMVYIGDSAQAIYGFMECTDVKHTLQQQYIDWTLYTTFRFGQKVCDYVNERRLCVSPAVAHPQNFDTTIEVIDNIETIMPGPHTVL--------------------------------------LPSAWDKRLFKKVDKLKALEILGKINLTDASESIVLSTVHGYKGLEAERVVVTCSVRNARNDDELKLLYVAVTRARIAPSLVRAFAG 453          
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Match: A0A835YX22_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX22_9STRA)

HSP 1 Score: 155 bits (391), Expect = 2.480e-38
Identity = 98/252 (38.89%), Postives = 134/252 (53.17%), Query Frame = 2
Query:  593 RFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQE-YVDWTLYTTFRFGQAVCDFVNVRHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASST-LPSTWDKSLFKKIDKLKVIAILARVNQ--EDAADSIVLSTVHGFKGLEADRVLVTRAVRNARND---DEIRLLYVAVTRAKHTLYLQRCRS 1327
            R+   +A Y  ++VDEAQD+N+VM+ L++++      V+  D+ Q +YGFM C DV   L ++ YV WTLY TFR+G AVCDFVN   LC +P        +T + +       +   H  L   W + LQ ADRY  AGR VS+D  K  E++    S    +T  +  F++I K  V  IL  V    +   D + LSTVHGFKGLEA  V+V   V +A       +    YVAVTR+   LYL   R 
Sbjct:  234 RWQAAVADYDTIVVDEAQDMNVVMLDLISEVKEQHMIVFAMDAGQKLYGFMGCRDVTTLLPRDSYVLWTLYLTFRYGSAVCDFVNALRLCRAPTCPALGAPDTAV-VSTRSATAVQEPHVALFATWADALQAADRYLAAGRRVSMDSAKREEMLTALRSPEANATSCQQAFRRIGKAGVARILHAVGDCGDKVKDDVRLSTVHGFKGLEAGAVVVAANVIDANGSFTSSQKARAYVAVTRSTLRLYLLERRK 484          
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Match: A0A836CDY6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDY6_9STRA)

HSP 1 Score: 124 bits (310), Expect = 7.340e-27
Identity = 72/211 (34.12%), Postives = 113/211 (53.55%), Query Frame = 2
Query:  593 RFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQEYVD-WTLYTTFRFGQAVCDFVNVRHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLPSTWDKSLFKKIDKLKVIAILARVNQ--EDAADSIVLSTVHGFKGLEADR 1216
            R++  +  Y +VI+DEAQDLN+VM  L+ ++      V+VGD  Q +Y FM C DV   L  E  + W LY +FR+G+ VCD +N   L   P  A     +T ++ V +   + +  H  L   W + +  A++Y + GRSVS+D  K  E++  A S       + + K++ +   + IL+ +    EDA D + +STVHG+K    DR
Sbjct:   87 RWSAALQDYDVVIIDEAQDLNVVMAELVMEVAPQKMLVFVGDGGQKLYAFMACRDVTEILPPESFNAWILYMSFRYGKKVCDLINTLQLPLVPTFAAEGAPDTLVQAVGSGLEVAEP-HVSLFATWADAIAAANKYLERGRSVSMDSVKRHELLEAACSEDDDAGYQQVLKRVSRAGALRILSAIRDAGEDAMD-VFISTVHGYKVGNGDR 295          
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Match: A0A835ZHA6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHA6_9STRA)

HSP 1 Score: 122 bits (305), Expect = 9.480e-27
Identity = 69/205 (33.66%), Postives = 111/205 (54.15%), Query Frame = 2
Query:  593 RFANFMAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQEYVD-WTLYTTFRFGQAVCDFVNVRHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLPSTWDKSLFKKIDKLKVIAILARVNQ--EDAADSIVLSTVHGFK 1198
            R++  +  Y +VI+DEAQDLN+VM  L+ ++      ++VGD  Q +Y FM C DV   L  E  + W LY +FR+G+ VCD +N   L   P  A     +T ++ V +   + +  H  L   W + +  A++Y + GRSVS+D  K  E++  A S       + + K++ +   + IL+ +    EDA D + +STVHG+K
Sbjct:  229 RWSAALQDYDVVIIDEAQDLNVVMAELVMEVAPQKMLIFVGDGGQKLYAFMACRDVTEILPPESFNAWILYLSFRYGKKVCDLINTLQLPLVPTFAAEGAPDTLVQAVGSGLEVAEP-HVSLFATWADAIAAANKYLERGRSVSMDSVKRHELLEAACSEDDDAGYQQVLKRVSRAGALRILSAIRDAGEDAMD-VFISTVHGYK 431          
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Match: A0A835Z086_9STRA (DNA helicase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z086_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 6.060e-13
Identity = 71/249 (28.51%), Postives = 118/249 (47.39%), Query Frame = 2
Query:  608 MAKYKLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQEYVD-WTLYTTFRFGQAVCDFVNVRHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLPST----WDK---------SLFKKIDKLKVIAILARVNQEDAADSIVLSTVHGFKGLEADRVLVTRAVRNARNDDEIRLLYVAVTRAKHTLYL 1312
            +A Y+ V++DEAQD+   ++A +++++      YVGD+ QA+Y +    +   +L + + D   L+ ++R GQ VC+ VN     S   V+  D       I          ++T L R    +L+ A   T        +K KV ++++     L S     W K          L K++D+++V     R +Q+     +V STVHGFKG EAD   V R   +   D++ ++  VA TRAK  L +
Sbjct:  205 LANYQCVVIDEAQDIKPAVMAGLSRLHGTKPVFYVGDTDQALYAYDGAVNALSSLSESFTDKLVLHGSYRCGQQVCNLVNENGWASHDMVSLTDRCTV---IAPQLPHAFSASYTYLFRSNMAMLERA-AITPNCYFPDFNK-KVDQLLSSKRQALESALQPDWGKYLTFKRKVTELTKRVDRMRVKR--RRKDQQ----CVVFSTVHGFKGCEAD---VVRLGADIMADEDRKIKLVAATRAKKMLIM 439          
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Match: UPI00200CD8E8 (AAA family ATPase n=1 Tax=Frankia sp. AgB32 TaxID=631119 RepID=UPI00200CD8E8)

HSP 1 Score: 73.6 bits (179), Expect = 2.380e-10
Identity = 84/292 (28.77%), Postives = 120/292 (41.10%), Query Frame = 2
Query:  578 GEAKRRFANFMAKYKLVIVDEAQDLNLVMIALM-TQIYHATTTVYVGDSAQAIYGFMECTDVKHTLQQEYVDWTLYTT--FRFGQAVCDFVNV--------RHLCSSPAVAHPDNTNTRIEIVDNDQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASSTLPSTWD---------------------------KSLFKKIDKLKVIAILARV-NQEDAADS-IVLSTVHGFKGLEADRVLVTR--AVRNARNDDEIRLLYVAVTRAKHTLYLQRCRS 1327
            G+  RR +  M   +++++DEAQD+  VM+ ++ TQ+   T  V VGDSAQAI  F    D    +    VD T Y T  FRFGQ + DF N           L   P    PD+T   I       VI+   + V V +   ++    R    G +  +    V      A+    + W                            K +   ID+    AI+A + N  D  D+ I + T H  KGL+   V +          N+DE+ LLYVAVTRA+  L +  C S
Sbjct:  218 GDLSRRGSYSMGA-EILMIDEAQDMAPVMLGIIKTQMRRGTRVVLVGDSAQAINSFTGAVDAFKNIT---VDNTCYLTRSFRFGQDIADFANTILAQLDTPLRLVGKPG--GPDDTGY-IGPCSRPDVILTRTNAVAVSEALTLMAAGQRVNLVGNTAKM----VVTFAKAAADLRENGWTAHPELGCFSSWKQVQDYAEHDELGGDLKLMVDLIDRFGTDAIIAGLANIADPRDADITVCTAHQSKGLQWQDVKLASDFPAPGKLNEDELMLLYVAVTRAQDVLDVTACPS 498          
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Match: A0A836CK41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK41_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.460e-10
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  395 DAETREKFVAMELRDGSIHVLHAGAGAGKTTLSIRLMKSVAERYPEAECIALTFNVAAAADGEAKRRFAN--FMAKYKLVIVDEAQDLN 655
            D++ R  F  ++L++ S+HVLHAGA AGKTTL   L+ S+ ERY     +ALTFNVAAA +G+ +    +  +   Y  +     +DLN
Sbjct:   13 DSQARIDFTNLKLKNRSVHVLHAGAAAGKTTLCTSLLASIGERYEGVRTLALTFNVAAAVEGQDRNECESCTWQTIYSFIFALYKEDLN 101          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348039 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z6T1_9STRA2.850e-310100.00DNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A835YZ90_9STRA6.130e-21184.84UvrD-like helicase ATP-binding domain-containing p... [more]
A0A836CA48_9STRA7.550e-14259.71DNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A836C8L3_9STRA2.850e-10446.89DNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A835YX22_9STRA2.480e-3838.89DNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A836CDY6_9STRA7.340e-2734.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZHA6_9STRA9.480e-2733.66P-loop containing nucleoside triphosphate hydrolas... [more]
A0A835Z086_9STRA6.060e-1328.51DNA helicase n=2 Tax=Tribonema minus TaxID=303371 ... [more]
UPI00200CD8E82.380e-1028.77AAA family ATPase n=1 Tax=Frankia sp. AgB32 TaxID=... [more]
A0A836CK41_9STRA5.460e-1041.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1318174..1321634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348039|estExt_Genemark1.C_Ctg_180174
DescriptionDNA helicase
COG categoryL
Max annot lvl1236|Gammaproteobacteria
EggNOG OGsCOG0210@1|root,COG0210@2|Bacteria,1R4PV@1224|Proteobacteria,1RZXT@1236|Gammaproteobacteria,3NJ6N@468|Moraxellaceae
Evalue4.72e-10
Seed ortholog981223.AIED01000035_gene3038
Hectar predicted targeting categoryother localisation
TranscriptId348361
TrackFilteredModels1
ProteinId348039
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348039gene_1522Tribonema minus UTEX_B_3156 geneContig_18 1318174..1321634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348039Trimin1|348039|estExt_Genemark1.C_Ctg_180174Tribonema minus UTEX_B_3156 polypeptideContig_18 1318193..1321634 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1522_1exon_1522_1Tribonema minus UTEX_B_3156 exonContig_18 1318174..1318237 +
exon_1522_2exon_1522_2Tribonema minus UTEX_B_3156 exonContig_18 1318504..1318830 +
exon_1522_3exon_1522_3Tribonema minus UTEX_B_3156 exonContig_18 1320378..1320575 +
exon_1522_4exon_1522_4Tribonema minus UTEX_B_3156 exonContig_18 1320891..1321634 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_1522UTR5_1522Tribonema minus UTEX_B_3156 five_prime_UTRContig_18 1318174..1318192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1522CDS_1522Tribonema minus UTEX_B_3156 CDSContig_18 1318193..1318237 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1522 ID=mRNA_1522|Name=jgi.p|Trimin1|348039|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1333bp|location=Sequence derived from alignment at Contig_18:1318174..1321634+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGACAAGACACGCTGAAGATGGCCCTACTCATGACCGGCGTCTACGGCA
GGCCCATGCATACGGCAAGCTTTACAAGTCCTGCCGACGTCGCCCATACT
CTCAACGACATGGGCAAGTCTGCCATGACCATCCACCAGCTCTACACGGA
CCTATACCGCAATTCTCTCGCCCAGACTCAGTACATCTCCGCGCTGCAGC
ACCACATTGTGAAACTGCAGCAGGAGCGCTCCCTGTTGTGGGACGCCGCT
AGAAAGAAAGGTGTCCACCTCATTGACTCAGCCAGCTTGGAAGCTATCAT
CAAGCGCCAAAGTGAGGGAACGGATGCTGAGAGCGATGCCGAAAACCCGA
CCCCCGCTTCGTCCGATGTCCCCATCAAAGTCGAGACGTCAGAGGATGCT
GAGACACGGGAGAAGTTTGTGGCCATGGAGCTACGTGACGGCAGCATACA
TGTGCTTCACGCAGGCGCAGGAGCCGGCAAGACCACACTTTCTATCCGCC
TCATGAAATCCGTTGCCGAGAGATACCCGGAGGCAGAGTGCATCGCGCTC
ACCTTCAATGTTGCAGCTGCTGCTGACGGAGAAGCCAAGCGCCGCTTTGC
AAACTTCATGGCCAAGTACAAGCTTGTCATTGTGGACGAGGCTCAAGACC
TTAACCTGGTGATGATCGCATTGATGACCCAGATATACCACGCGACGACG
ACAGTCTACGTCGGTGACTCCGCACAGGCCATCTACGGTTTCATGGAGTG
TACGGACGTCAAGCACACGCTTCAGCAAGAGTATGTAGACTGGACGCTCT
ACACTACTTTTCGGTTCGGCCAGGCGGTTTGTGATTTTGTCAACGTCAGG
CACCTTTGCAGCTCGCCTGCTGTAGCTCACCCAGACAACACCAACACGCG
CATCGAGATTGTGGACAACGACCAGGTGATCATGGACGGCGCGCACACTG
TTCTAGTTCGCAAGTGGACCGAGATCCTGCAGACGGCAGACAGGTACACC
CAGGCGGGCCGCTCCGTCTCGATTGATAAGGACAAGGTCACTGAGATCAT
AAACTGCGCATCGTCAACCCTGCCGAGCACATGGGACAAGAGCCTGTTCA
AAAAGATTGACAAGCTGAAGGTGATTGCAATCCTGGCCAGAGTCAATCAA
GAAGACGCTGCTGACTCCATAGTGCTCAGCACAGTTCACGGCTTCAAGGG
CCTAGAGGCCGATCGCGTGCTGGTGACACGTGCTGTACGCAACGCACGCA
ATGATGACGAGATCCGCCTGCTCTATGTAGCTGTCACAAGGGCTAAGCAC
ACGCTGTACCTGCAGAGGTGCCGCAGTGGCTGA
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protein sequence of jgi.p|Trimin1|348039

>Trimin1|348039|estExt_Genemark1.C_Ctg_180174 ID=Trimin1|348039|estExt_Genemark1.C_Ctg_180174|Name=jgi.p|Trimin1|348039|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=438bp
MALLMTGVYGRPMHTASFTSPADVAHTLNDMGKSAMTIHQLYTDLYRNSL
AQTQYISALQHHIVKLQQERSLLWDAARKKGVHLIDSASLEAIIKRQSEG
TDAESDAENPTPASSDVPIKVETSEDAETREKFVAMELRDGSIHVLHAGA
GAGKTTLSIRLMKSVAERYPEAECIALTFNVAAAADGEAKRRFANFMAKY
KLVIVDEAQDLNLVMIALMTQIYHATTTVYVGDSAQAIYGFMECTDVKHT
LQQEYVDWTLYTTFRFGQAVCDFVNVRHLCSSPAVAHPDNTNTRIEIVDN
DQVIMDGAHTVLVRKWTEILQTADRYTQAGRSVSIDKDKVTEIINCASST
LPSTWDKSLFKKIDKLKVIAILARVNQEDAADSIVLSTVHGFKGLEADRV
LVTRAVRNARNDDEIRLLYVAVTRAKHTLYLQRCRSG*
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mRNA from alignment at Contig_18:1318174..1321634+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1522 ID=mRNA_1522|Name=jgi.p|Trimin1|348039|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3461bp|location=Sequence derived from alignment at Contig_18:1318174..1321634+ (Tribonema minus UTEX_B_3156 )
AAGACAAGACACGCTGAAGATGGCCCTACTCATGACCGGCGTCTACGGCA GGCCCATGCATACGGTGAGCGCTCCACCACCTCAAGTGTACTGTGCAACA TCTTGACGAAGTGAGGGTGAGATCCATCTCTAAGGGTCTCCAGTGTGTCA GTTACCGCAATGGCGACTGCATGCCTATGCACAGAGAACACTTATATGCC TAACCTCACTTGTCGTCAACACGCCCGTCGCCTCTCTCAGCAGCAGCACA CTCCACACAGCGAGAGCACTTTGGAATCTGCTTATTCTCACCACCGCCTT TTCCCGTACCCGCCCCGCTTACTTGTGCAGGCAAGCTTTACAAGTCCTGC CGACGTCGCCCATACTCTCAACGACATGGGCAAGTCTGCCATGACCATCC ACCAGCTCTACACGGACCTATACCGCAATTCTCTCGCCCAGACTCAGTAC ATCTCCGCGCTGCAGCACCACATTGTGAAACTGCAGCAGGAGCGCTCCCT GTTGTGGGACGCCGCTAGAAAGAAAGGTGTCCACCTCATTGACTCAGCCA GCTTGGAAGCTATCATCAAGCGCCAAAGTGAGGGAACGGATGCTGAGAGC GATGCCGAAAACCCGACCCCCGCTTCGTCCGATGTCCCCATCAAAGTCGA GACGTCAGTGAGCCAGAACACACGTGCCAGAGCTGCAAAGGCTGAAGCCA ATCACCCTCACAAGAAGCAGCGCCTCTGAGGCCGCAATCAGGGCAGTGGA TCGTCACGGAGAGCTTTACCAAGAGTCCCTGGCATAACGATGACCGGGCT CTCTGCTCGCTGTTTGTCCCAGCAGTAGGGGAGGTGTACGTCCAGATTTT CGATTGCTGAGCATTTTCATAGATCACGCAAGGGTCGGTCACACTTTTGC GCGGTGGTCATACTAGGTGTGATGTGTTGATGGACCATGTGTGTGGTTGA GTGCAGTTTTGAGTAGAGGCACTCTGTATGAATGCATATGTCGTTTCAAT GCCCAACAACAATCAATACAACGCTGTGTGTTAATCTTCAAGTGGCTGGC TGTTTCCCTCAATGTTTGTCATGCTTTCTCCTGCGCTTTGTTCTGTGCAA GGTTCACATCACTGTTGATGCTCGTTTCAGTTTTCGATTCACTCTGACAT ATGCCTAAGTTGCACTTGCAGCTATACACACCGTGAATGATGCCTTGCAC CTGACCCTTTGTCATTATCGGTAGCAACTCGGAGATTGCAAGCAATGTGG ACATGACTGCACTGAATGCTTCAAGGTTAAAAGTCATCTGTGTATGTTGC TGTAGGCAAACAAAAAAATGCGCATGCAGAGCATGTGCGAGGTCTGTTTA CTTCCTGCGTTTTAAGTTATAAGAACAATGTTGCCTGCTGCTGATGATGT TGTGGAGTTTGTCAGCACCTTGGAATTTGCGGTTGACTCGGATGAGTATG ATTCCCTGTCAGAAATCGAGAAAGTCTACTGCACAATCAAGAAGGCTGCG TGTGAAGGATGTTCCTCATGCACCGTGTATATACAAAAACACATAACTGT CGAGCTGCTTGAAGAGCGCGGGTACTCTGTCACGGATGCAAATGCATGCG GCAAGAAATGCATATCATGGAGCGATACTGCACAGGTCAGCCGGCATAGT CAGTCCTTCCCAACAGCATGTGATGTCAGGATGTGCACTGAAAGGTGGCC AGGTGAGAGCGCTGAAGAGCGAAACGCGTGACTCAGAGAGTCTGGCTGCA AAAAGTAGTCAATTACCCATTGTATTTGGCGGCATGCAGGAGCTGAAAGC TGTGACCAGGATCGAGAGTGCATCATCATCAGAAAGCGTCTTGCAGATCT TGGCTATGACTGCACGATCGGCTATAGCCAGGTCCTGCATATATCATGGA GCACGCCTGTGTCAGGTCAGCCACCTATGTCAGCACCATCGCCATGTCCA CTTTGCCGTAGCATCTGCTAGAGTCAAACTATGAAGAAGGTGCGCTTCAA GCCGCACATATAAAATGTTGCGGTATGTACAACAGAGTGTGTGTGCCGTG TGTAATTCACGCTACGAATCTCGTACGAAGCATGACAAAGCGCGCACCTT GTGGTGCTGAGGCAATGCCCCACAAGCGACCAAGCCCATACGAGAAGAAG GTTGATGTGCAAGCTGAGTGTGCCCCGCCAAAGACAAATCAACAGATGCT CCAGGAGGATGCTGAGACACGGGAGAAGTTTGTGGCCATGGAGCTACGTG ACGGCAGCATACATGTGCTTCACGCAGGCGCAGGAGCCGGCAAGACCACA CTTTCTATCCGCCTCATGAAATCCGTTGCCGAGAGATACCCGGAGGCAGA GTGCATCGCGCTCACCTTCAATGTTGCAGCTGCTGCTGACGGAGAAGCCA AGGTAAACGGAGCGCAAAGGCTGACGTTCAAAACTATTGACAGCATGCTT TACGCTCTGTACGCTGATGAAGTCAAGAACTCTCTGAAGGTAGACTTCAA TGTGACAGAGGAAGTGATGAAACTCGCACAGCGTGTGCTGAGGAGGACTG TGACTGCCGAGCAGGCCCGCTCATATGGCGACCAGCTGGAGACCGCATGC AACCGAGGCTGTTTGAAGGACTTGGGCAGTGCATCTCTTGCCTTGTGGAA TGCGGGCATAGCAGGTACATGGTGGTCTCACTCGATGCTCAGGGTGCGAG CACGCGATGACCCGCAGCGCCGCTTTGCAAACTTCATGGCCAAGTACAAG CTTGTCATTGTGGACGAGGCTCAAGACCTTAACCTGGTGATGATCGCATT GATGACCCAGATATACCACGCGACGACGACAGTCTACGTCGGTGACTCCG CACAGGCCATCTACGGTTTCATGGAGTGTACGGACGTCAAGCACACGCTT CAGCAAGAGTATGTAGACTGGACGCTCTACACTACTTTTCGGTTCGGCCA GGCGGTTTGTGATTTTGTCAACGTCAGGCACCTTTGCAGCTCGCCTGCTG TAGCTCACCCAGACAACACCAACACGCGCATCGAGATTGTGGACAACGAC CAGGTGATCATGGACGGCGCGCACACTGTTCTAGTTCGCAAGTGGACCGA GATCCTGCAGACGGCAGACAGGTACACCCAGGCGGGCCGCTCCGTCTCGA TTGATAAGGACAAGGTCACTGAGATCATAAACTGCGCATCGTCAACCCTG CCGAGCACATGGGACAAGAGCCTGTTCAAAAAGATTGACAAGCTGAAGGT GATTGCAATCCTGGCCAGAGTCAATCAAGAAGACGCTGCTGACTCCATAG TGCTCAGCACAGTTCACGGCTTCAAGGGCCTAGAGGCCGATCGCGTGCTG GTGACACGTGCTGTACGCAACGCACGCAATGATGACGAGATCCGCCTGCT CTATGTAGCTGTCACAAGGGCTAAGCACACGCTGTACCTGCAGAGGTGCC GCAGTGGCTGA
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Coding sequence (CDS) from alignment at Contig_18:1318174..1321634+

>mRNA_1522 ID=mRNA_1522|Name=jgi.p|Trimin1|348039|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1314bp|location=Sequence derived from alignment at Contig_18:1318174..1321634+ (Tribonema minus UTEX_B_3156 )
ATGGCCCTACTCATGACCGGCGTCTACGGCAGGCCCATGCATACGGCAAG
CTTTACAAGTCCTGCCGACGTCGCCCATACTCTCAACGACATGGGCAAGT
CTGCCATGACCATCCACCAGCTCTACACGGACCTATACCGCAATTCTCTC
GCCCAGACTCAGTACATCTCCGCGCTGCAGCACCACATTGTGAAACTGCA
GCAGGAGCGCTCCCTGTTGTGGGACGCCGCTAGAAAGAAAGGTGTCCACC
TCATTGACTCAGCCAGCTTGGAAGCTATCATCAAGCGCCAAAGTGAGGGA
ACGGATGCTGAGAGCGATGCCGAAAACCCGACCCCCGCTTCGTCCGATGT
CCCCATCAAAGTCGAGACGTCAGAGGATGCTGAGACACGGGAGAAGTTTG
TGGCCATGGAGCTACGTGACGGCAGCATACATGTGCTTCACGCAGGCGCA
GGAGCCGGCAAGACCACACTTTCTATCCGCCTCATGAAATCCGTTGCCGA
GAGATACCCGGAGGCAGAGTGCATCGCGCTCACCTTCAATGTTGCAGCTG
CTGCTGACGGAGAAGCCAAGCGCCGCTTTGCAAACTTCATGGCCAAGTAC
AAGCTTGTCATTGTGGACGAGGCTCAAGACCTTAACCTGGTGATGATCGC
ATTGATGACCCAGATATACCACGCGACGACGACAGTCTACGTCGGTGACT
CCGCACAGGCCATCTACGGTTTCATGGAGTGTACGGACGTCAAGCACACG
CTTCAGCAAGAGTATGTAGACTGGACGCTCTACACTACTTTTCGGTTCGG
CCAGGCGGTTTGTGATTTTGTCAACGTCAGGCACCTTTGCAGCTCGCCTG
CTGTAGCTCACCCAGACAACACCAACACGCGCATCGAGATTGTGGACAAC
GACCAGGTGATCATGGACGGCGCGCACACTGTTCTAGTTCGCAAGTGGAC
CGAGATCCTGCAGACGGCAGACAGGTACACCCAGGCGGGCCGCTCCGTCT
CGATTGATAAGGACAAGGTCACTGAGATCATAAACTGCGCATCGTCAACC
CTGCCGAGCACATGGGACAAGAGCCTGTTCAAAAAGATTGACAAGCTGAA
GGTGATTGCAATCCTGGCCAGAGTCAATCAAGAAGACGCTGCTGACTCCA
TAGTGCTCAGCACAGTTCACGGCTTCAAGGGCCTAGAGGCCGATCGCGTG
CTGGTGACACGTGCTGTACGCAACGCACGCAATGATGACGAGATCCGCCT
GCTCTATGTAGCTGTCACAAGGGCTAAGCACACGCTGTACCTGCAGAGGT
GCCGCAGTGGCTGA
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