mRNA_1519 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161888
Unique NamemRNA_1519
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Match: A0A836CI72_9STRA (CheY-like superfamily protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI72_9STRA)

HSP 1 Score: 256 bits (653), Expect = 3.190e-86
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1
Query:    1 MNNDQSKPLHVLIVEDYNLSAQYMSQALKLCDCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMRWSGYIVAMSANEDLRTSAIAAGADKFLHKLDHPVRDIVAIVNAVKTNKP 387
            MNNDQSKPLHVLIVEDYNLSAQYMSQALKLCDCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMRWSGYIVAMSANEDLRTSAIAAGADKFLHKLDHPVRDIVAIVNAVKTNKP
Sbjct:    1 MNNDQSKPLHVLIVEDYNLSAQYMSQALKLCDCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMRWSGYIVAMSANEDLRTSAIAAGADKFLHKLDHPVRDIVAIVNAVKTNKP 129          
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Match: A0A836CPC2_9STRA (Response regulatory domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPC2_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.700e-38
Identity = 69/118 (58.47%), Postives = 92/118 (77.97%), Query Frame = 1
Query:   34 LIVEDYNLSAQYMSQALKLCDCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMR----WSGYIVAMSANEDLRTSAIAAGADKFLHKLDHPVRDIVAIVNAVK 375
            ++VEDY LSA YMSQAL++C C  +  A +GE A+E+AR +GPFDVVFVDL+MKGMGG+ CI  L+SM     W+  IVAMSA+ +L +SA+AAGAD+F+HKL  PVRDI A++ ++K
Sbjct:    1 MLVEDYQLSALYMSQALRMCGCTDVHAALNGECAIELARVKGPFDVVFVDLVMKGMGGVECIRALRSMEHDNGWTQCIVAMSADAELSSSALAAGADRFMHKLAQPVRDIFAMIASIK 118          
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Match: A0A835Z4T2_9STRA (CheY-like superfamily protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4T2_9STRA)

HSP 1 Score: 132 bits (331), Expect = 4.290e-37
Identity = 65/124 (52.42%), Postives = 86/124 (69.35%), Query Frame = 1
Query:   25 LHVLIVEDYNLSAQYMSQALKLCDCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMR----WSGYIVAMSANEDLRTSAIAAGADKFLHKLDHPVRDIVAIVNAVKTNK 384
            L VL++EDY LSA+YM QALKLC+C  + IA SGE+A+ +    GPFDVVFVDL+M GMGG+ C+  L+ M     W    VAMS++E L+  A+ AGAD+FL+KL HPVR++  I+  V   K
Sbjct:    6 LLVLLIEDYALSAKYMMQALKLCNCEEVVIASSGEEAIHITEKHGPFDVVFVDLVMSGMGGLECMKQLRQMETRNGWRQRFVAMSSDEHLKQDALDAGADEFLYKLAHPVREVGIIIKLVDETK 129          
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Match: A0A536WNC6_9PROT (Response regulator transcription factor n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536WNC6_9PROT)

HSP 1 Score: 57.0 bits (136), Expect = 9.610e-8
Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = 1
Query:   19 KPLHVLIVEDYNLSAQYMSQALKLCDCRS----IQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMRWSGYIVAMSA--NEDLRTSAIAAGADKFLHKLD-----HPVRDIV 354
            K + V++V+D   S Q+ S   +   C      +  A SG +A+  A ++ P D++F+D+ M GM G+A  S++K    +  IV M+   +E+ R  AIAAGAD FL K D     H V D++
Sbjct:    2 KRIRVMVVDD---SLQFASAVGQFLACNGNFEVLASATSGGEALARASTERP-DLMFIDISMPGMNGLAVTSLIKGRNAAPKIVMMTLEDSEEHRVGAIAAGADAFLPKDDFAHGFHAVLDLL 120          
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Match: A0A2V7KCU7_9BACT (DNA-binding response regulator n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7KCU7_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 9.630e-8
Identity = 39/125 (31.20%), Postives = 69/125 (55.20%), Query Frame = 1
Query:   19 KPLHVLIVEDYNLSAQYMSQAL-KLCDCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMRWSGYIVAMSA--NEDLRTSAIAAGADKFLHKLDHPVRDIVAIVNAVKTNK 384
            KP+H+L+ +D+      +   L +  + R +  A +GE+A++ AR+  P DVV +DL+M GMGG+  +  + ++     I+ +SA   ED     +AAGA  F+ K   PV ++   + +V  N+
Sbjct:   11 KPIHILLADDHWAVRAGLHALLDRQANLRVVGEAATGEEALKQARALKP-DVVLMDLVMPGMGGLEAMRRIAALHAGTKILVLSAYLQEDRLLDVLAAGASGFVSK-GSPVENLTRAIRSVAQNE 133          
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Match: UPI001BAD0279 (sigma-54 dependent transcriptional regulator n=1 Tax=Caulobacter sp. S6 TaxID=2823693 RepID=UPI001BAD0279)

HSP 1 Score: 59.3 bits (142), Expect = 1.080e-7
Identity = 38/116 (32.76%), Postives = 69/116 (59.48%), Query Frame = 1
Query:   31 VLIVEDYNLSAQYMSQALKLCDCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMRWSGYIVAMSANEDLRT--SAIAAGADKFLHKLDHPVRDIVAIVNAV 372
            VL+V+D + + + + QA+   +  ++  AESGE A++   +  P DV+ +DL+M G+GG+A +  ++S  ++  +V ++A   + T   A+ AGA  F  K   P R +V+I NA+
Sbjct:    5 VLVVDD-DPTQRRLIQAVLEREGFAVAHAESGEAAIDRLVAGAPADVIMLDLIMPGLGGLAALKEMRSRGFNQPVVVLTATGGIDTVVQAMQAGAQDFFVKPASPERILVSIRNAL 119          
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Match: UPI001C5623D1 (sigma-54 dependent transcriptional regulator n=1 Tax=Pseudohoeflea sp. DP4N28-3 TaxID=2860393 RepID=UPI001C5623D1)

HSP 1 Score: 59.3 bits (142), Expect = 1.100e-7
Identity = 42/123 (34.15%), Postives = 66/123 (53.66%), Query Frame = 1
Query:   22 PLHVLIVEDYNLSAQYMSQALKLCDCRSIQIAESGEQAVEMA-RSQGPFDVVFVDLLMKGMGGIACISVLKSMRWSGYIVAMSANEDLRT--SAIAAGADKFLHKLDHPVRDIVAIVNAVKTN 381
            P HVLIV+D  +  + +    +    + + +AE GE A+ M  RS G FDVV +DL+M G+GGIA +  +        ++  +    + T   A+ AGA  F  K   P R ++AI NAV+++
Sbjct:    2 PSHVLIVDDDPVQRRLLKGTCERSGLK-VDLAEDGESAMSMIKRSAGGFDVVVLDLVMPGVGGIAVLEWMAENAPDIPVIVQTGQGGIETVVRAMRAGAHDFAVKPVSPERLLLAIGNAVRSS 123          
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Match: A0A536Z360_9PROT (Response regulator transcription factor (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536Z360_9PROT)

HSP 1 Score: 57.0 bits (136), Expect = 2.420e-7
Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = 1
Query:   19 KPLHVLIVEDYNLSAQYMSQALKLCDCRS----IQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMRWSGYIVAMSA--NEDLRTSAIAAGADKFLHKLD-----HPVRDIV 354
            K + V++V+D   S Q+ S   +   C      +  A SG +A+  A ++ P D++F+D+ M GM G+A  S++K    +  IV M+   +E+ R  AIAAGAD FL K D     H V D++
Sbjct:   58 KRIRVMVVDD---SLQFASAVGQFLACNDNFEVLASANSGGEALARASTERP-DLMFIDISMPGMNGLAVTSLIKGRNAAPKIVMMTLEDSEEHRIGAIAAGADAFLPKDDFAHGFHAVLDLL 176          
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Match: A0A1M3NB61_9DELT (DNA-binding response regulator n=1 Tax=Myxococcales bacterium 68-20 TaxID=1895795 RepID=A0A1M3NB61_9DELT)

HSP 1 Score: 57.0 bits (136), Expect = 3.280e-7
Identity = 37/110 (33.64%), Postives = 64/110 (58.18%), Query Frame = 1
Query:    7 NDQSKPLHVLIVEDYNLSAQYMSQALKLC-DCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMRWSGYIVAM--SANEDLRTSAIAAGADKFLHK 327
            N+Q+  + VLIV+D+ +  Q +   L+   D   +  A++GE AVE+AR + P DVV +D+LM G+GG+     + ++    ++V +  S+ E+    A+ AGA  +L K
Sbjct:    2 NEQTSVVKVLIVDDHTIVRQGLRALLETQPDFTIVAEADTGEAAVELARDERP-DVVLMDVLMPGIGGVEATRRINAVHPQAHVVILTSSSEEEHVVPALRAGALSYLSK 110          
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Match: A0A7C4JZ73_9BACT (Response regulator n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7C4JZ73_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 4.380e-7
Identity = 37/116 (31.90%), Postives = 62/116 (53.45%), Query Frame = 1
Query:   31 VLIVEDYNLSAQYMSQALKLC---DCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACIS-VLKSMRWSGYIVAMSANEDLRT--SAIAAGADKFLHKLDHPVRDIVAI 360
            VLIV+D     + +S  ++         +    +GE A+EM     P++V+F+D+ M G+GG+A    + K    +  +VA+S N+DL T  S + +GA  +LHK D  +  +V I
Sbjct:    8 VLIVDDNPTFVKTLSLLVQTVLGNKLSQLDTVSTGEDAIEMVSMNTPYNVIFMDVNMPGIGGVAATKEISKEYYRATRVVAVSFNKDLETMKSMLFSGATYYLHKDDLTLEKLVEI 123          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CI72_9STRA3.190e-86100.00CheY-like superfamily protein n=2 Tax=Tribonema mi... [more]
A0A836CPC2_9STRA2.700e-3858.47Response regulatory domain-containing protein n=1 ... [more]
A0A835Z4T2_9STRA4.290e-3752.42CheY-like superfamily protein n=1 Tax=Tribonema mi... [more]
A0A536WNC6_9PROT9.610e-834.96Response regulator transcription factor n=2 Tax=Be... [more]
A0A2V7KCU7_9BACT9.630e-831.20DNA-binding response regulator n=1 Tax=Gemmatimona... [more]
UPI001BAD02791.080e-732.76sigma-54 dependent transcriptional regulator n=1 T... [more]
UPI001C5623D11.100e-734.15sigma-54 dependent transcriptional regulator n=1 T... [more]
A0A536Z360_9PROT2.420e-734.96Response regulator transcription factor (Fragment)... [more]
A0A1M3NB61_9DELT3.280e-733.64DNA-binding response regulator n=1 Tax=Myxococcale... [more]
A0A7C4JZ73_9BACT4.380e-731.90Response regulator n=1 Tax=Bacteroidales bacterium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1311969..1312358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161888|e_gw1.18.76.1
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02022
KEGG ModuleM00516
KEGG Pathwayko02020,ko04011,ko04139,map02020,map04011,map04139
KEGG koko:K11231,ko:K19691
EC2.7.13.3
GOsGO:0000155,GO:0000156,GO:0000160,GO:0000161,GO:0000165,GO:0001932,GO:0001933,GO:0002831,GO:0002833,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0004888,GO:0005034,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006468,GO:0006469,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0007231,GO:0007234,GO:0008150,GO:0008152,GO:0009607,GO:0009628,GO:0009892,GO:0009927,GO:0009987,GO:0010033,GO:0010563,GO:0010570,GO:0010605,GO:0016020,GO:0016021,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0018106,GO:0018193,GO:0018202,GO:0019220,GO:0019222,GO:0019538,GO:0023014,GO:0023052,GO:0030447,GO:0031098,GO:0031224,GO:0031226,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0033554,GO:0033673,GO:0033993,GO:0035556,GO:0036180,GO:0036211,GO:0038023,GO:0040007,GO:0040008,GO:0042221,GO:0042325,GO:0042326,GO:0043086,GO:0043170,GO:0043412,GO:0043549,GO:0044092,GO:0044182,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0045859,GO:0045927,GO:0045936,GO:0046677,GO:0046777,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051403,GO:0051716,GO:0060089,GO:0060255,GO:0065007,GO:0065009,GO:0070887,GO:0071214,GO:0071236,GO:0071310,GO:0071396,GO:0071470,GO:0071704,GO:0071944,GO:0080090,GO:0090033,GO:0097305,GO:0097306,GO:0097307,GO:0097308,GO:0104004,GO:0140096,GO:1900428,GO:1900430,GO:1900443,GO:1900445,GO:1901564,GO:1901700,GO:1901701
Preferred nameSLN1
DescriptionHis Kinase A (phosphoacceptor) domain
COG categoryT
Max annot lvl4751|Fungi
EggNOG OGsCOG0642@1|root,KOG0519@2759|Eukaryota,38F3X@33154|Opisthokonta,3NW4F@4751|Fungi,3QM27@4890|Ascomycota,20F05@147545|Eurotiomycetes,3MQB9@451870|Chaetothyriomycetidae
Evalue3.61e-08
Seed ortholog5970.XP_009156732.1
Hectar predicted targeting categoryother localisation
TranscriptId162210
TrackFilteredModels1
ProteinId161888
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161888gene_1519Tribonema minus UTEX_B_3156 geneContig_18 1311969..1312358 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1519_1exon_1519_1Tribonema minus UTEX_B_3156 exonContig_18 1311969..1312358 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1519CDS_1519Tribonema minus UTEX_B_3156 CDSContig_18 1311969..1312358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161888Trimin1|161888|e_gw1.18.76.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1311969..1312358 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1519 ID=mRNA_1519|Name=jgi.p|Trimin1|161888|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=390bp|location=Sequence derived from alignment at Contig_18:1311969..1312358- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAACGATCAATCAAAGCCGCTGCATGTCTTGATTGTGGAAGACTA
CAACTTGAGCGCTCAGTACATGTCACAGGCGCTGAAGCTATGCGATTGCA
GGTCTATTCAGATTGCTGAAAGCGGTGAGCAAGCAGTGGAGATGGCCAGA
TCACAAGGACCTTTCGATGTTGTGTTTGTGGATCTGCTGATGAAAGGAAT
GGGGGGCATAGCATGCATAAGTGTTCTGAAATCAATGCGGTGGTCAGGCT
ACATTGTTGCGATGAGTGCAAATGAAGACCTACGAACGTCCGCCATAGCG
GCCGGCGCAGACAAGTTCTTGCACAAACTCGATCATCCAGTACGCGATAT
TGTGGCAATTGTGAATGCTGTCAAGACAAATAAGCCTTGA
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protein sequence of jgi.p|Trimin1|161888

>Trimin1|161888|e_gw1.18.76.1 ID=Trimin1|161888|e_gw1.18.76.1|Name=jgi.p|Trimin1|161888|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=130bp
MNNDQSKPLHVLIVEDYNLSAQYMSQALKLCDCRSIQIAESGEQAVEMAR
SQGPFDVVFVDLLMKGMGGIACISVLKSMRWSGYIVAMSANEDLRTSAIA
AGADKFLHKLDHPVRDIVAIVNAVKTNKP*
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mRNA from alignment at Contig_18:1311969..1312358-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1519 ID=mRNA_1519|Name=jgi.p|Trimin1|161888|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=390bp|location=Sequence derived from alignment at Contig_18:1311969..1312358- (Tribonema minus UTEX_B_3156 )
ATGAACAACGATCAATCAAAGCCGCTGCATGTCTTGATTGTGGAAGACTA CAACTTGAGCGCTCAGTACATGTCACAGGCGCTGAAGCTATGCGATTGCA GGTCTATTCAGATTGCTGAAAGCGGTGAGCAAGCAGTGGAGATGGCCAGA TCACAAGGACCTTTCGATGTTGTGTTTGTGGATCTGCTGATGAAAGGAAT GGGGGGCATAGCATGCATAAGTGTTCTGAAATCAATGCGGTGGTCAGGCT ACATTGTTGCGATGAGTGCAAATGAAGACCTACGAACGTCCGCCATAGCG GCCGGCGCAGACAAGTTCTTGCACAAACTCGATCATCCAGTACGCGATAT TGTGGCAATTGTGAATGCTGTCAAGACAAATAAGCCTTGA
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Coding sequence (CDS) from alignment at Contig_18:1311969..1312358-

>mRNA_1519 ID=mRNA_1519|Name=jgi.p|Trimin1|161888|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=390bp|location=Sequence derived from alignment at Contig_18:1311969..1312358- (Tribonema minus UTEX_B_3156 )
ATGAACAACGATCAATCAAAGCCGCTGCATGTCTTGATTGTGGAAGACTA
CAACTTGAGCGCTCAGTACATGTCACAGGCGCTGAAGCTATGCGATTGCA
GGTCTATTCAGATTGCTGAAAGCGGTGAGCAAGCAGTGGAGATGGCCAGA
TCACAAGGACCTTTCGATGTTGTGTTTGTGGATCTGCTGATGAAAGGAAT
GGGGGGCATAGCATGCATAAGTGTTCTGAAATCAATGCGGTGGTCAGGCT
ACATTGTTGCGATGAGTGCAAATGAAGACCTACGAACGTCCGCCATAGCG
GCCGGCGCAGACAAGTTCTTGCACAAACTCGATCATCCAGTACGCGATAT
TGTGGCAATTGTGAATGCTGTCAAGACAAATAAGCCTTGA
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